Rmu_sc0018346.1_g000012

Fruit protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0018346.1
OG0002199
Physical Location & Seq
Reverse (-)
50990 .. 53860
2871 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0018346.1_g000012.1.cds

Sequence Viewer

Length: 522 bp
atggggaaaggcttcgagattgatctaatcgaaccgctggagaattatcttacggttctagttttcacaacgggatctggaatcaggtctctgattgaattagggtttaatgttgataagggaatcaatgtgaagctcttctatggggccagaaaccttgacagaatggcttatcaggtgaagaagcatcccagatcagaaccaagcaatgaagaaacggcgttgtcgcaccatggagaagttttgtggagacctgctaacccaaatcgggctcatatgacccaacccagatcgggtcgctccgatcagttgctagccacatctcgccgaactcctcaccttttggctgcctcaaaacctgtgatctgctccgtcgtcgaagaaagaaacagcaccagccacgatcttccccttcctcacctcactgccatccactgtgatctccccaatcagaatgagaaccttgatcaagggaccccgctgcacaccagacccacgcagagtccacaagtgcccgtctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAD_binding_1

Protein Analysis

173

Amino Acids

19.3

Weight (kDa)

7.14

Isoelectric Point (pI)

50.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 262
AciI CCGC 2 cut(s) 35, 479
AclWI GGATC 1 cut(s) 82
AfiI CCNNNNNNNGG 2 cut(s) 268, 293
AgsI TTSAA 1 cut(s) 98
AluBI AGCT 1 cut(s) 136
AluI AGCT 1 cut(s) 136
Alw26I GTCTC 2 cut(s) 93, 244
AlwI GGATC 1 cut(s) 82
AoxI GGCC 1 cut(s) 147
ApeKI GCWGC 2 cut(s) 347, 481
Asp700I GAANNNNTTC 2 cut(s) 11, 137
AspS9I GGNCC 2 cut(s) 147, 474
AsuHPI GGTGA 3 cut(s) 190, 329, 410
AsuNHI GCTAGC 1 cut(s) 313
AvaII GGWCC 1 cut(s) 474
BaeGI GKGCMC 1 cut(s) 516
BanII GRGCYC 1 cut(s) 274
BbvI GCAGC 2 cut(s) 334, 468
BccI CCATC 1 cut(s) 437
BceAI ACGGC 1 cut(s) 234
BclI TGATCA 1 cut(s) 466
BcoDI GTCTC 2 cut(s) 93, 244
BfaI CTAG 2 cut(s) 59, 314
BfuAI ACCTGC 1 cut(s) 262
BisI GCNGC 2 cut(s) 348, 482
BlsI GCNGC 2 cut(s) 349, 483
Bme18I GGWCC 1 cut(s) 474
BmgT120I GGNCC 2 cut(s) 147, 474
BmiI GGNNCC 3 cut(s) 148, 475, 476
BmsI GCATC 1 cut(s) 196
BmtI GCTAGC 1 cut(s) 317
BpmI CTGGAG 1 cut(s) 59
BsaI GGTCTC 2 cut(s) 93, 244
BsaJI CCNNGG 1 cut(s) 232
Bsc4I CCNNNNNNNGG 2 cut(s) 268, 293
Bse3DI GCAATG 1 cut(s) 214
BseDI CCNNGG 1 cut(s) 232
BseGI GGATG 2 cut(s) 187, 429
BseLI CCNNNNNNNGG 2 cut(s) 268, 293
BseMI GCAATG 1 cut(s) 214
BseRI GAGGAG 1 cut(s) 324
BseSI GKGCMC 1 cut(s) 516
BseXI GCAGC 2 cut(s) 334, 468
BsgI GTGCAG 1 cut(s) 467
BshFI GGCC 1 cut(s) 149
BslFI GGGAC 1 cut(s) 487
BslI CCNNNNNNNGG 2 cut(s) 268, 293
BsmAI GTCTC 2 cut(s) 93, 244
BsmFI GGGAC 1 cut(s) 487
BsnI GGCC 1 cut(s) 149
Bso31I GGTCTC 2 cut(s) 93, 244
Bsp1286I GDGCHC 2 cut(s) 274, 516
Bsp143I GATC 9 cut(s) 22, 74, 194, 290, 304, 363, 403, 439, 466
Bsp19I CCATGG 1 cut(s) 232
BspACI CCGC 2 cut(s) 35, 479
BspANI GGCC 1 cut(s) 149
BspLI GGNNCC 3 cut(s) 148, 475, 476
BspMI ACCTGC 1 cut(s) 262
BspOI GCTAGC 1 cut(s) 317
BspPI GGATC 1 cut(s) 82
BspQI GCTCTTC 1 cut(s) 143
BspTNI GGTCTC 2 cut(s) 93, 244
BsrDI GCAATG 1 cut(s) 214
BssECI CCNNGG 1 cut(s) 232
BssMI GATC 9 cut(s) 22, 74, 194, 290, 304, 363, 403, 439, 466
BssT1I CCWWGG 1 cut(s) 232
Bst4CI ACNGT 2 cut(s) 55, 437
Bst6I CTCTTC 1 cut(s) 143
BstC8I GCNNGC 1 cut(s) 315
BstDSI CCRYGG 1 cut(s) 232
BstF5I GGATG 2 cut(s) 187, 429
BstKTI GATC 9 cut(s) 25, 77, 197, 293, 307, 366, 406, 442, 469
BstMAI GTCTC 2 cut(s) 93, 244
BstMBI GATC 9 cut(s) 22, 74, 194, 290, 304, 363, 403, 439, 466
BstSLI GKGCMC 1 cut(s) 516
BstV1I GCAGC 2 cut(s) 334, 468
BstX2I RGATCY 1 cut(s) 74
BstYI RGATCY 1 cut(s) 74
BsuRI GGCC 1 cut(s) 149
BtgI CCRYGG 1 cut(s) 232
BtsCI GGATG 2 cut(s) 187, 429
BtsI GCAGTG 1 cut(s) 423
BtsIMutI CAGTG 2 cut(s) 423, 433
BveI ACCTGC 1 cut(s) 262
Cac8I GCNNGC 1 cut(s) 315
Cfr13I GGNCC 2 cut(s) 147, 474
CviAII CATG 1 cut(s) 233
CviJI RGCY 8 cut(s) 12, 136, 149, 170, 272, 317, 347, 399
CviKI_1 RGCY 8 cut(s) 12, 136, 149, 170, 272, 317, 347, 399
DpnI GATC 9 cut(s) 24, 76, 196, 292, 306, 365, 405, 441, 468
DpnII GATC 9 cut(s) 22, 74, 194, 290, 304, 363, 403, 439, 466
Eam1104I CTCTTC 1 cut(s) 143
EarI CTCTTC 1 cut(s) 143
Eco130I CCWWGG 1 cut(s) 232
Eco24I GRGCYC 1 cut(s) 274
Eco31I GGTCTC 2 cut(s) 93, 244
Eco47I GGWCC 1 cut(s) 474
EcoO109I RGGNCCY 1 cut(s) 474
EcoT14I CCWWGG 1 cut(s) 232
EcoT38I GRGCYC 1 cut(s) 274
ErhI CCWWGG 1 cut(s) 232
FaeI CATG 1 cut(s) 236
FaiI YATR 4 cut(s) 144, 234, 276, 278
FaqI GGGAC 1 cut(s) 487
FatI CATG 1 cut(s) 232
FauI CCCGC 1 cut(s) 486
FauNDI CATATG 1 cut(s) 276
FbaI TGATCA 1 cut(s) 466
Fnu4HI GCNGC 2 cut(s) 348, 482
FokI GGATG 2 cut(s) 174, 416
FriOI GRGCYC 1 cut(s) 274
Fsp4HI GCNGC 2 cut(s) 348, 482
FspBI CTAG 2 cut(s) 59, 314
GluI GCNGC 2 cut(s) 348, 482
GsuI CTGGAG 1 cut(s) 59
HaeIII GGCC 1 cut(s) 149
Hin1II CATG 1 cut(s) 236
HinfI GANTC 3 cut(s) 81, 123, 502
HphI GGTGA 3 cut(s) 190, 329, 410
Hpy166II GTNNAC 1 cut(s) 506
Hpy188I TCNGA 5 cut(s) 93, 199, 304, 453, 521
Hpy188III TCNNGA 2 cut(s) 16, 78
Hpy8I GTNNAC 1 cut(s) 506
Hpy99I CGWCG 2 cut(s) 377, 380
HpyAV CCTTC 1 cut(s) 422
HpyCH4III ACNGT 2 cut(s) 55, 437
HpyCH4V TGCA 1 cut(s) 484
Hsp92II CATG 1 cut(s) 236
KflI GGGWCCC 1 cut(s) 474
Ksp22I TGATCA 1 cut(s) 466
Kzo9I GATC 9 cut(s) 22, 74, 194, 290, 304, 363, 403, 439, 466
LguI GCTCTTC 1 cut(s) 143
LmnI GCTCC 2 cut(s) 305, 374
Lsp1109I GCAGC 2 cut(s) 334, 468
LweI GCATC 1 cut(s) 196
MaeI CTAG 2 cut(s) 59, 314
MalI GATC 9 cut(s) 24, 76, 196, 292, 306, 365, 405, 441, 468
MboI GATC 9 cut(s) 22, 74, 194, 290, 304, 363, 403, 439, 466
MboII GAAGA 5 cut(s) 130, 193, 224, 392, 398
MflI RGATCY 1 cut(s) 74
MhlI GDGCHC 2 cut(s) 274, 516
MluCI AATT 2 cut(s) 43, 98
MlyI GAGTC 1 cut(s) 511
MnlI CCTC 4 cut(s) 345, 361, 426, 431
MroXI GAANNNNTTC 2 cut(s) 11, 137
MseI TTAA 1 cut(s) 108
MspA1I CMGCKG 2 cut(s) 37, 481
NcoI CCATGG 1 cut(s) 232
NdeI CATATG 1 cut(s) 276
NdeII GATC 9 cut(s) 22, 74, 194, 290, 304, 363, 403, 439, 466
NheI GCTAGC 1 cut(s) 313
NlaIII CATG 1 cut(s) 236
NlaIV GGNNCC 3 cut(s) 148, 475, 476
PciSI GCTCTTC 1 cut(s) 143
PdmI GAANNNNTTC 2 cut(s) 11, 137
PfeI GAWTC 2 cut(s) 81, 123
PkrI GCNGC 2 cut(s) 349, 483
PleI GAGTC 1 cut(s) 510
PpsI GAGTC 1 cut(s) 510
PpuMI RGGWCCY 1 cut(s) 474
Psp5II RGGWCCY 1 cut(s) 474
PspN4I GGNNCC 3 cut(s) 148, 475, 476
PspPI GGNCC 2 cut(s) 147, 474
PspPPI RGGWCCY 1 cut(s) 474
PsuI RGATCY 1 cut(s) 74
SapI GCTCTTC 1 cut(s) 143
SaqAI TTAA 1 cut(s) 108
SatI GCNGC 2 cut(s) 348, 482
Sau3AI GATC 9 cut(s) 22, 74, 194, 290, 304, 363, 403, 439, 466
Sau96I GGNCC 2 cut(s) 147, 474
SchI GAGTC 1 cut(s) 511
SduI GDGCHC 2 cut(s) 274, 516
SetI ASST 9 cut(s) 89, 138, 159, 180, 256, 342, 361, 423, 465
SfaNI GCATC 1 cut(s) 196
SinI GGWCC 1 cut(s) 474
Sse9I AATT 2 cut(s) 43, 98
SsiI CCGC 2 cut(s) 35, 479
SspMI CTAG 2 cut(s) 59, 314
StyI CCWWGG 1 cut(s) 232
TaaI ACNGT 2 cut(s) 55, 437
TaqI TCGA 3 cut(s) 15, 30, 378
TasI AATT 2 cut(s) 43, 98
TfiI GAWTC 2 cut(s) 81, 123
Tru1I TTAA 1 cut(s) 108
Tru9I TTAA 1 cut(s) 108
TscAI CASTG 2 cut(s) 430, 440
TseI GCWGC 2 cut(s) 347, 481
TspDTI ATGAA 1 cut(s) 225
TspGWI ACGGA 1 cut(s) 361
TspRI CASTG 2 cut(s) 430, 440
VpaK11BI GGWCC 1 cut(s) 474
XmnI GAANNNNTTC 2 cut(s) 11, 137
XspI CTAG 2 cut(s) 59, 314
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.