Rmu_sc0000352.1_g000003

Fruit protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000352.1
OG0002199
Physical Location & Seq
Reverse (-)
4577 .. 7007
2431 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000352.1_g000003.1.cds

Sequence Viewer

Length: 870 bp
atgtcatttacaatctgccatccccatgcgcaccttagcccacccctccctcccatgtctatcctacgccgcctcaacccctcccacctaaccctccaccgccaccgccgccgcctcgccagcgtcgcagccgccgtacgccaggacaccactctctggaccccggccccgctctcccgggttgagcctgctgcggagtccctcttccacgtccgcgtcgacctctccgacgcgcccgacctcgcttcctcctacacgcgcgccgggcagtaccttcagctccgggtcccggacgttgaaaagccctcgttcttggccatcgcgtcgccgccggccctggcggcgaagggcgtgttcgagttcttggtgaagagcgtggaggggtccattgctgagctactgtgcgggttgaagaagggggatgttgtggagctgacccaggccatggggaaaggcttcgagattgatcagatcgagccgccggagaattatcctacggttctaattttcgccacgggatctggaatcagtccaatcaggtctctggttgaatcggggtttaacgccgataagcgatccgacgtgaagctcttctatggggccagaaaccttgacagaatggcttatcaggatagatttaaagattgggaagcttcaggtgtaaagatagttcctgtattgtcacaaccacacgacggctggactggacaaagtggttatgtgcaggctgcttttactagagccaagcaagtttataaccctctctccaccgctgctgttctctgtgggcagaaacagatggctgaggaagttacctcaattcttttagcagatggagttgcaagtgaaaaaatactgaagaatttctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAD_binding_1

Protein Analysis

289

Amino Acids

31.62

Weight (kDa)

8.38

Isoelectric Point (pI)

50.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 756
Acc16I TGCGCA 1 cut(s) 30
AccB7I CCANNNNNTGG 2 cut(s) 156, 445
AccBSI CCGCTC 1 cut(s) 172
AccI GTMKAC 1 cut(s) 219
AccII CGCG 5 cut(s) 216, 233, 259, 261, 323
AclWI GGATC 2 cut(s) 526, 570
AcoI YGGCCR 1 cut(s) 315
AcsI RAATTY 1 cut(s) 862
AcuI CTGAAG 2 cut(s) 260, 639
AfaI GTAC 2 cut(s) 138, 272
AfiI CCNNNNNNNGG 4 cut(s) 156, 289, 445, 695
AgsI TTSAA 3 cut(s) 299, 412, 551
AjiI CACGTC 2 cut(s) 211, 583
AjnI CCWGG 3 cut(s) 141, 336, 438
AluBI AGCT 5 cut(s) 280, 397, 433, 589, 653
AluI AGCT 5 cut(s) 280, 397, 433, 589, 653
Alw26I GTCTC 1 cut(s) 546
AlwI GGATC 2 cut(s) 526, 570
Ama87I CYCGRG 1 cut(s) 177
AoxI GGCC 5 cut(s) 165, 315, 333, 441, 600
ApeKI GCWGC 4 cut(s) 128, 191, 728, 773
ApoI RAATTY 1 cut(s) 862
Asp700I GAANNNNTTC 3 cut(s) 455, 590, 863
AspLEI GCGC 4 cut(s) 31, 235, 261, 263
AspS9I GGNCC 6 cut(s) 159, 166, 286, 334, 384, 600
AsuC2I CCSGG 6 cut(s) 164, 178, 179, 265, 284, 290
AsuHPI GGTGA 1 cut(s) 379
AvaI CYCGRG 1 cut(s) 177
AvaII GGWCC 3 cut(s) 159, 286, 384
BalI TGGCCA 1 cut(s) 317
BbvCI CCTCAGC 1 cut(s) 804
BbvI GCAGC 4 cut(s) 140, 178, 715, 760
BccI CCATC 4 cut(s) 27, 326, 793, 827
BceAI ACGGC 2 cut(s) 119, 712
BciT130I CCWGG 3 cut(s) 143, 338, 440
BclI TGATCA 1 cut(s) 466
BcnI CCSGG 6 cut(s) 164, 178, 179, 265, 284, 290
BcoDI GTCTC 1 cut(s) 546
BfaI CTAG 1 cut(s) 738
BglI GCCNNNNNGGC 1 cut(s) 341
BlpI GCTNAGC 1 cut(s) 393
Bme1390I CCNGG 9 cut(s) 143, 164, 178, 179, 265, 284, 290, 338, 440
Bme18I GGWCC 3 cut(s) 159, 286, 384
BmeT110I CYCGRG 1 cut(s) 177
BmgBI CACGTC 2 cut(s) 211, 583
BmgT120I GGNCC 6 cut(s) 159, 166, 286, 334, 384, 600
BmiI GGNNCC 6 cut(s) 161, 168, 287, 288, 385, 601
BmrFI CCNGG 9 cut(s) 143, 164, 178, 179, 265, 284, 290, 338, 440
Bpu10I CCTNAGC 2 cut(s) 35, 804
Bpu1102I GCTNAGC 1 cut(s) 393
BpuMI CCSGG 6 cut(s) 164, 178, 179, 265, 284, 290
BsaI GGTCTC 1 cut(s) 546
BsaJI CCNNGG 6 cut(s) 162, 177, 336, 438, 444, 513
BsaXI ACNNNNNCTCC 2 cut(s) 749, 779
Bsc4I CCNNNNNNNGG 4 cut(s) 156, 289, 445, 695
Bse118I RCCGGY 1 cut(s) 331
Bse1I ACTGG 1 cut(s) 709
Bse3DI GCAATG 1 cut(s) 387
BseBI CCWGG 3 cut(s) 143, 338, 440
BseDI CCNNGG 6 cut(s) 162, 177, 336, 438, 444, 513
BseGI GGATG 2 cut(s) 19, 427
BseLI CCNNNNNNNGG 4 cut(s) 156, 289, 445, 695
BseMI GCAATG 1 cut(s) 387
BseMII CTCAG 2 cut(s) 384, 795
BseNI ACTGG 1 cut(s) 709
BsePI GCGCGC 1 cut(s) 259
BseXI GCAGC 4 cut(s) 140, 178, 715, 760
BsgI GTGCAG 1 cut(s) 743
Bsh1236I CGCG 5 cut(s) 216, 233, 259, 261, 323
BshFI GGCC 5 cut(s) 167, 317, 335, 443, 602
BsiHKCI CYCGRG 1 cut(s) 177
BsiSI CCGG 7 cut(s) 164, 178, 264, 283, 290, 332, 482
BsiWI CGTACG 1 cut(s) 136
BslFI GGGAC 2 cut(s) 184, 272
BslI CCNNNNNNNGG 4 cut(s) 156, 289, 445, 695
BsmAI GTCTC 1 cut(s) 546
BsmFI GGGAC 2 cut(s) 184, 272
BsnI GGCC 5 cut(s) 167, 317, 335, 443, 602
Bso31I GGTCTC 1 cut(s) 546
BsoBI CYCGRG 1 cut(s) 177
Bsp143I GATC 4 cut(s) 466, 471, 518, 575
Bsp1720I GCTNAGC 1 cut(s) 393
Bsp19I CCATGG 1 cut(s) 444
BspANI GGCC 5 cut(s) 167, 317, 335, 443, 602
BspCNI CTCAG 2 cut(s) 385, 796
BspFNI CGCG 5 cut(s) 216, 233, 259, 261, 323
BspLI GGNNCC 6 cut(s) 161, 168, 287, 288, 385, 601
BspPI GGATC 2 cut(s) 526, 570
BspQI GCTCTTC 2 cut(s) 365, 596
BspTNI GGTCTC 1 cut(s) 546
BsrBI CCGCTC 1 cut(s) 172
BsrDI GCAATG 1 cut(s) 387
BsrFI RCCGGY 1 cut(s) 331
BsrI ACTGG 1 cut(s) 709
BssAI RCCGGY 1 cut(s) 331
BssECI CCNNGG 6 cut(s) 162, 177, 336, 438, 444, 513
BssHII GCGCGC 1 cut(s) 259
BssMI GATC 4 cut(s) 466, 471, 518, 575
BssT1I CCWWGG 1 cut(s) 444
Bst2UI CCWGG 3 cut(s) 143, 338, 440
Bst4CI ACNGT 2 cut(s) 402, 499
Bst6I CTCTTC 3 cut(s) 209, 365, 596
BstC8I GCNNGC 5 cut(s) 121, 189, 261, 333, 726
BstDEI CTNAG 3 cut(s) 35, 393, 804
BstDSI CCRYGG 2 cut(s) 444, 513
BstF5I GGATG 2 cut(s) 19, 427
BstFNI CGCG 5 cut(s) 216, 233, 259, 261, 323
BstHHI GCGC 4 cut(s) 31, 235, 261, 263
BstKTI GATC 4 cut(s) 469, 474, 521, 578
BstMAI GTCTC 1 cut(s) 546
BstMBI GATC 4 cut(s) 466, 471, 518, 575
BstMWI GCNNNNNNNGC 5 cut(s) 108, 120, 125, 265, 341
BstNI CCWGG 3 cut(s) 143, 338, 440
BstSCI CCNGG 9 cut(s) 141, 162, 176, 177, 263, 282, 288, 336, 438
BstUI CGCG 5 cut(s) 216, 233, 259, 261, 323
BstV1I GCAGC 4 cut(s) 140, 178, 715, 760
BstX2I RGATCY 1 cut(s) 518
BstYI RGATCY 1 cut(s) 518
BsuRI GGCC 5 cut(s) 167, 317, 335, 443, 602
BtgI CCRYGG 2 cut(s) 444, 513
BtgZI GCGATG 1 cut(s) 304
BtrI CACGTC 2 cut(s) 211, 583
BtsCI GGATG 2 cut(s) 19, 427
Cac8I GCNNGC 5 cut(s) 121, 189, 261, 333, 726
CfoI GCGC 4 cut(s) 31, 235, 261, 263
Cfr10I RCCGGY 1 cut(s) 331
Cfr13I GGNCC 6 cut(s) 159, 166, 286, 334, 384, 600
Cfr9I CCCGGG 1 cut(s) 177
CseI GACGC 4 cut(s) 112, 205, 239, 312
Csp6I GTAC 2 cut(s) 137, 271
CviAII CATG 3 cut(s) 26, 55, 445
CviQI GTAC 2 cut(s) 137, 271
DdeI CTNAG 3 cut(s) 35, 393, 804
DpnI GATC 4 cut(s) 468, 473, 520, 577
DpnII GATC 4 cut(s) 466, 471, 518, 575
DraI TTTAAA 1 cut(s) 640
EaeI YGGCCR 1 cut(s) 315
Eam1104I CTCTTC 3 cut(s) 209, 365, 596
EarI CTCTTC 3 cut(s) 209, 365, 596
Eco130I CCWWGG 1 cut(s) 444
Eco31I GGTCTC 1 cut(s) 546
Eco47I GGWCC 3 cut(s) 159, 286, 384
Eco57I CTGAAG 2 cut(s) 260, 639
Eco88I CYCGRG 1 cut(s) 177
EcoO109I RGGNCCY 1 cut(s) 286
EcoRII CCWGG 3 cut(s) 141, 336, 438
EcoT14I CCWWGG 1 cut(s) 444
ErhI CCWWGG 1 cut(s) 444
FaeI CATG 3 cut(s) 29, 58, 448
FaiI YATR 6 cut(s) 27, 56, 446, 597, 720, 756
FaqI GGGAC 2 cut(s) 184, 272
FatI CATG 3 cut(s) 25, 54, 444
FauI CCCGC 2 cut(s) 177, 398
FbaI TGATCA 1 cut(s) 466
FblI GTMKAC 1 cut(s) 219
FokI GGATG 2 cut(s) 6, 434
FspAI RTGCGCAY 1 cut(s) 30
FspBI CTAG 1 cut(s) 738
FspI TGCGCA 1 cut(s) 30
GlaI GCGC 4 cut(s) 30, 234, 260, 262
HaeIII GGCC 5 cut(s) 167, 317, 335, 443, 602
HapII CCGG 7 cut(s) 164, 178, 264, 283, 290, 332, 482
HgaI GACGC 4 cut(s) 112, 205, 239, 312
HhaI GCGC 4 cut(s) 31, 235, 261, 263
Hin1II CATG 3 cut(s) 29, 58, 448
Hin6I GCGC 4 cut(s) 29, 233, 259, 261
HinP1I GCGC 4 cut(s) 29, 233, 259, 261
HincII GTYRAC 1 cut(s) 220
HindII GTYRAC 1 cut(s) 220
HindIII AAGCTT 1 cut(s) 651
HinfI GANTC 3 cut(s) 197, 525, 551
HpaII CCGG 7 cut(s) 164, 178, 264, 283, 290, 332, 482
HphI GGTGA 1 cut(s) 379
Hpy166II GTNNAC 1 cut(s) 220
Hpy188I TCNGA 3 cut(s) 229, 471, 580
Hpy188III TCNNGA 4 cut(s) 157, 460, 522, 629
Hpy8I GTNNAC 1 cut(s) 220
Hpy99I CGWCG 6 cut(s) 128, 221, 233, 328, 584, 698
HpyAV CCTTC 3 cut(s) 284, 340, 409
HpyCH4III ACNGT 2 cut(s) 402, 499
HpyCH4IV ACGT 3 cut(s) 210, 294, 582
HpyCH4V TGCA 2 cut(s) 724, 842
HpyF10VI GCNNNNNNNGC 5 cut(s) 108, 120, 125, 265, 341
HpyF3I CTNAG 3 cut(s) 35, 393, 804
HpySE526I ACGT 3 cut(s) 210, 294, 582
Hsp92II CATG 3 cut(s) 29, 58, 448
HspAI GCGC 4 cut(s) 29, 233, 259, 261
KflI GGGWCCC 1 cut(s) 286
KroI GCCGGC 1 cut(s) 331
KroNI GCCGGC 1 cut(s) 333
Ksp22I TGATCA 1 cut(s) 466
Kzo9I GATC 4 cut(s) 466, 471, 518, 575
LguI GCTCTTC 2 cut(s) 365, 596
LmnI GCTCC 2 cut(s) 285, 430
Lsp1109I GCAGC 4 cut(s) 140, 178, 715, 760
MaeI CTAG 1 cut(s) 738
MaeII ACGT 3 cut(s) 210, 294, 582
MaeIII GTNAC 2 cut(s) 681, 811
MalI GATC 4 cut(s) 468, 473, 520, 577
MbiI CCGCTC 1 cut(s) 172
MboI GATC 4 cut(s) 466, 471, 518, 575
MboII GAAGA 4 cut(s) 196, 382, 424, 583
MflI RGATCY 1 cut(s) 518
MlsI TGGCCA 1 cut(s) 317
MluCI AATT 4 cut(s) 487, 504, 819, 862
MluNI TGGCCA 1 cut(s) 317
MlyI GAGTC 1 cut(s) 206
MmeI TCCRAC 2 cut(s) 252, 603
Mox20I TGGCCA 1 cut(s) 317
MroNI GCCGGC 1 cut(s) 331
MroXI GAANNNNTTC 3 cut(s) 455, 590, 863
MscI TGGCCA 1 cut(s) 317
MseI TTAA 2 cut(s) 561, 639
MslI CAYNNNNRTG 1 cut(s) 24
Msp20I TGGCCA 1 cut(s) 317
MspA1I CMGCKG 1 cut(s) 773
MspI CCGG 7 cut(s) 164, 178, 264, 283, 290, 332, 482
MspR9I CCNGG 9 cut(s) 143, 164, 178, 179, 265, 284, 290, 338, 440
MvaI CCWGG 3 cut(s) 143, 338, 440
MvnI CGCG 5 cut(s) 216, 233, 259, 261, 323
MwoI GCNNNNNNNGC 5 cut(s) 108, 120, 125, 265, 341
NaeI GCCGGC 1 cut(s) 333
NciI CCSGG 6 cut(s) 164, 178, 179, 265, 284, 290
NcoI CCATGG 1 cut(s) 444
NdeII GATC 4 cut(s) 466, 471, 518, 575
NgoMIV GCCGGC 1 cut(s) 331
NlaIII CATG 3 cut(s) 29, 58, 448
NlaIV GGNNCC 6 cut(s) 161, 168, 287, 288, 385, 601
NmuCI GTSAC 1 cut(s) 681
NsbI TGCGCA 1 cut(s) 30
PauI GCGCGC 1 cut(s) 259
PciSI GCTCTTC 2 cut(s) 365, 596
PcsI WCGNNNNNNNCGW 3 cut(s) 132, 216, 225
PdiI GCCGGC 1 cut(s) 333
PdmI GAANNNNTTC 3 cut(s) 455, 590, 863
PfeI GAWTC 2 cut(s) 525, 551
Pfl23II CGTACG 1 cut(s) 136
PflMI CCANNNNNTGG 2 cut(s) 156, 445
PfoI TCCNGGA 1 cut(s) 288
PleI GAGTC 1 cut(s) 205
PpsI GAGTC 1 cut(s) 205
PpuMI RGGWCCY 1 cut(s) 286
PsiI TTATAA 1 cut(s) 756
Psp5II RGGWCCY 1 cut(s) 286
Psp6I CCWGG 3 cut(s) 141, 336, 438
PspGI CCWGG 3 cut(s) 141, 336, 438
PspLI CGTACG 1 cut(s) 136
PspN4I GGNNCC 6 cut(s) 161, 168, 287, 288, 385, 601
PspPI GGNCC 6 cut(s) 159, 166, 286, 334, 384, 600
PspPPI RGGWCCY 1 cut(s) 286
PsrI GAACNNNNNNTAC 2 cut(s) 654, 686
PsuI RGATCY 1 cut(s) 518
PteI GCGCGC 1 cut(s) 259
RsaI GTAC 2 cut(s) 138, 272
RsaNI GTAC 2 cut(s) 137, 271
RseI CAYNNNNRTG 1 cut(s) 24
SalI GTCGAC 1 cut(s) 218
SapI GCTCTTC 2 cut(s) 365, 596
SaqAI TTAA 2 cut(s) 561, 639
Sau3AI GATC 4 cut(s) 466, 471, 518, 575
Sau96I GGNCC 6 cut(s) 159, 166, 286, 334, 384, 600
SchI GAGTC 1 cut(s) 206
ScrFI CCNGG 9 cut(s) 143, 164, 178, 179, 265, 284, 290, 338, 440
SinI GGWCC 3 cut(s) 159, 286, 384
SmaI CCCGGG 1 cut(s) 179
SmiMI CAYNNNNRTG 1 cut(s) 24
Sse9I AATT 4 cut(s) 487, 504, 819, 862
SspMI CTAG 1 cut(s) 738
StyD4I CCNGG 9 cut(s) 141, 162, 176, 177, 263, 282, 288, 336, 438
StyI CCWWGG 1 cut(s) 444
TaaI ACNGT 2 cut(s) 402, 499
TaiI ACGT 3 cut(s) 213, 297, 585
TaqI TCGA 4 cut(s) 219, 357, 459, 474
TasI AATT 4 cut(s) 487, 504, 819, 862
TauI GCSGC 7 cut(s) 72, 111, 114, 134, 331, 344, 481
TfiI GAWTC 2 cut(s) 525, 551
Tru1I TTAA 2 cut(s) 561, 639
Tru9I TTAA 2 cut(s) 561, 639
TseFI GTSAC 1 cut(s) 681
TseI GCWGC 4 cut(s) 128, 191, 728, 773
Tsp45I GTSAC 1 cut(s) 681
TspMI CCCGGG 1 cut(s) 177
Van91I CCANNNNNTGG 2 cut(s) 156, 445
VpaK11BI GGWCC 3 cut(s) 159, 286, 384
XapI RAATTY 1 cut(s) 862
XcmI CCANNNNNNNNNTGG 1 cut(s) 696
XmaI CCCGGG 1 cut(s) 177
XmiI GTMKAC 1 cut(s) 219
XmnI GAANNNNTTC 3 cut(s) 455, 590, 863
XspI CTAG 1 cut(s) 738
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.