Rorug01G0076300

Fruit protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0002199
Physical Location & Seq
Reverse (-)
12396941 .. 12398123
1183 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0076300.1

Sequence Viewer

Length: 1071 bp
ATGAGCCGTTATTTCAATTTACTGGATTTTCATCTCAAAGAAGCTGGTGTGAGTTTGAGCGAAGGACTGGCTCACAATGAAGAAAGCACCAACAAAATATGTAAGCGCATCCACCGAGCCCCGTTGAAAAACCCGAAATGTGAGGCCTGTAGTATTGATGTAAACGGAGATGGAAGTTTTGGGCCTAATAAGATAGCGAGAATGTACGCTGCAGTCCACAAACCCGGGAAGCTGTCCCAGCCGCAAGATGCACTTGTTATCAAGCTTCCAGATGGTATTGTCCGTGGCATGAATCCAAAAGCTGAAGATATGGGTAGTGCAGTTGCGGCATGTCACTGGGGCATGTCCTCGGGCTTAAGTCAGCTGGGATCTGAGGTCAACTTCTGTTTTCTAGACAGCCTCAACGGCCCAAATGATGATACCAAACGCTATGGCAACGGCGACGGCAGAGAAGATGGCGGGCAAATCAATCTGAATTTTGGCCCATCTGCGACAGCACGATTGATGGATTTTGTGCCAGCAATTAAGTTGGAGAACAATTTGGCGTTCATTGACTCTGTGTGTCATTACCTTGCGCAACACGCAAGTGCTGATAAGCAAGAAGAGTACCTGAAGATCATAAACGGTAAAAAGTCTGAGGAGGTAGACAATTTCGATTCCCTTCAGATCTGGAATATGTTGACACTAGAACACAAGATTATTAAGGCACTGGAAGATAATGGACTCCTCATAACCCCAATGCGCTTTCATTCACCACCACCACTTCTTCCCAGTCCACCCCAAGGCTGGACGGCGGACCAAGCTAGCCGCTCTGCAAGCAAACCACGACCCTGTTGCTTCCCTAGTATCGAGACTGTCAACGAGAGCGTGTCTGAGAATCGCATCGTACCTGAGAGTGAGGATCACAGCGGCCTCTGGAAGCGCAAGGCACTCGCCATTTTAGGTGTTCCTTCTGAGCAAAAGAAGTCCCGAAACGCTGGAGGACTTCATATAGATGATGACGCGACAGCACAGGCCCCAAACAAGCCGCCAATGAAAGGAAAGGAGCTGGTATCTTCTGCATCAGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAD_binding_1

Protein Analysis

356

Amino Acids

38.75

Weight (kDa)

6.27

Isoelectric Point (pI)

51.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 576
AccBSI CCGCTC 1 cut(s) 810
AccI GTMKAC 1 cut(s) 645
AccII CGCG 1 cut(s) 1004
AciI CCGC 7 cut(s) 242, 326, 459, 794, 808, 909, 1028
AclWI GGATC 2 cut(s) 376, 909
AcsI RAATTY 1 cut(s) 475
AcuI CTGAAG 3 cut(s) 324, 632, 647
AfaI GTAC 3 cut(s) 206, 608, 888
AfiI CCNNNNNNNGG 3 cut(s) 782, 786, 1037
AflII CTTAAG 1 cut(s) 355
AgsI TTSAA 2 cut(s) 16, 127
AleI CACNNNNGTG 1 cut(s) 585
AluBI AGCT 7 cut(s) 44, 232, 265, 302, 364, 803, 1048
AluI AGCT 7 cut(s) 44, 232, 265, 302, 364, 803, 1048
Alw26I GTCTC 1 cut(s) 845
AlwI GGATC 2 cut(s) 376, 909
Ama87I CYCGRG 2 cut(s) 224, 349
AoxI GGCC 6 cut(s) 144, 182, 406, 481, 910, 1014
ApeKI GCWGC 1 cut(s) 209
ApoI RAATTY 1 cut(s) 475
AspLEI GCGC 4 cut(s) 108, 577, 744, 924
AspS9I GGNCC 5 cut(s) 182, 407, 482, 796, 1015
AsuC2I CCSGG 2 cut(s) 225, 226
AsuHPI GGTGA 1 cut(s) 744
AsuNHI GCTAGC 1 cut(s) 803
AvaI CYCGRG 2 cut(s) 224, 349
AvaII GGWCC 1 cut(s) 796
BanII GRGCYC 1 cut(s) 121
BbvI GCAGC 1 cut(s) 196
BccI CCATC 5 cut(s) 164, 266, 449, 493, 499
BceAI ACGGC 4 cut(s) 421, 454, 460, 807
BcgI CGANNNNNNTGC 4 cut(s) 816, 850, 913, 947
BcnI CCSGG 2 cut(s) 225, 226
BcoDI GTCTC 1 cut(s) 845
BfaI CTAG 4 cut(s) 392, 686, 804, 843
BfmI CTRYAG 2 cut(s) 148, 210
BfrI CTTAAG 1 cut(s) 355
BglI GCCNNNNNGGC 1 cut(s) 405
BglII AGATCT 1 cut(s) 666
BisI GCNGC 6 cut(s) 210, 242, 327, 808, 910, 1028
BlsI GCNGC 6 cut(s) 211, 243, 328, 809, 911, 1029
Bme1390I CCNGG 2 cut(s) 225, 226
Bme18I GGWCC 1 cut(s) 796
BmeT110I CYCGRG 2 cut(s) 224, 349
BmgT120I GGNCC 5 cut(s) 182, 407, 482, 796, 1015
BmiI GGNNCC 1 cut(s) 1017
BmrFI CCNGG 2 cut(s) 225, 226
BmrI ACTGGG 2 cut(s) 346, 765
BmsI GCATC 3 cut(s) 117, 238, 891
BmtI GCTAGC 1 cut(s) 807
BmuI ACTGGG 2 cut(s) 346, 765
BpmI CTGGAG 1 cut(s) 999
BpuMI CCSGG 2 cut(s) 225, 226
BsaBI GATNNNNATC 1 cut(s) 30
BsaJI CCNNGG 4 cut(s) 224, 283, 348, 781
Bsc4I CCNNNNNNNGG 3 cut(s) 782, 786, 1037
Bse1I ACTGG 5 cut(s) 27, 72, 341, 714, 771
Bse8I GATNNNNATC 1 cut(s) 30
BseDI CCNNGG 4 cut(s) 224, 283, 348, 781
BseGI GGATG 1 cut(s) 108
BseJI GATNNNNATC 1 cut(s) 30
BseLI CCNNNNNNNGG 3 cut(s) 782, 786, 1037
BseMII CTCAG 5 cut(s) 363, 627, 864, 882, 945
BseNI ACTGG 5 cut(s) 27, 72, 341, 714, 771
BseRI GAGGAG 2 cut(s) 653, 716
BseXI GCAGC 1 cut(s) 196
BseYI CCCAGC 2 cut(s) 237, 364
BsgI GTGCAG 1 cut(s) 339
Bsh1236I CGCG 1 cut(s) 1004
BshFI GGCC 6 cut(s) 146, 184, 408, 483, 912, 1016
BsiHKCI CYCGRG 2 cut(s) 224, 349
BsiSI CCGG 1 cut(s) 225
BslFI GGGAC 2 cut(s) 220, 952
BslI CCNNNNNNNGG 3 cut(s) 782, 786, 1037
BsmAI GTCTC 1 cut(s) 845
BsmFI GGGAC 2 cut(s) 220, 952
BsnI GGCC 6 cut(s) 146, 184, 408, 483, 912, 1016
BsoBI CYCGRG 2 cut(s) 224, 349
Bsp1286I GDGCHC 1 cut(s) 121
Bsp143I GATC 4 cut(s) 368, 615, 666, 901
BspACI CCGC 7 cut(s) 242, 326, 459, 794, 808, 909, 1028
BspANI GGCC 6 cut(s) 146, 184, 408, 483, 912, 1016
BspCNI CTCAG 5 cut(s) 364, 628, 865, 883, 946
BspFNI CGCG 1 cut(s) 1004
BspLI GGNNCC 1 cut(s) 1017
BspMAI CTGCAG 1 cut(s) 214
BspOI GCTAGC 1 cut(s) 807
BspPI GGATC 2 cut(s) 376, 909
BspTI CTTAAG 1 cut(s) 355
BsrBI CCGCTC 1 cut(s) 810
BsrI ACTGG 5 cut(s) 27, 72, 341, 714, 771
BssECI CCNNGG 4 cut(s) 224, 283, 348, 781
BssMI GATC 4 cut(s) 368, 615, 666, 901
BssT1I CCWWGG 1 cut(s) 781
Bst4CI ACNGT 2 cut(s) 626, 856
Bst6I CTCTTC 1 cut(s) 597
BstAFI CTTAAG 1 cut(s) 355
BstC8I GCNNGC 4 cut(s) 461, 519, 805, 817
BstDEI CTNAG 5 cut(s) 372, 636, 873, 891, 954
BstDSI CCRYGG 1 cut(s) 283
BstF5I GGATG 1 cut(s) 108
BstFNI CGCG 1 cut(s) 1004
BstHHI GCGC 4 cut(s) 108, 577, 744, 924
BstKTI GATC 4 cut(s) 371, 618, 669, 904
BstMAI GTCTC 1 cut(s) 845
BstMBI GATC 4 cut(s) 368, 615, 666, 901
BstMWI GCNNNNNNNGC 6 cut(s) 238, 326, 405, 581, 800, 816
BstNSI RCATGY 2 cut(s) 333, 346
BstSCI CCNGG 2 cut(s) 223, 224
BstSFI CTRYAG 2 cut(s) 148, 210
BstUI CGCG 1 cut(s) 1004
BstV1I GCAGC 1 cut(s) 196
BstX2I RGATCY 2 cut(s) 368, 666
BstYI RGATCY 2 cut(s) 368, 666
BsuRI GGCC 6 cut(s) 146, 184, 408, 483, 912, 1016
BtgI CCRYGG 1 cut(s) 283
BtsCI GGATG 1 cut(s) 108
BtsIMutI CAGTG 2 cut(s) 334, 707
Cac8I GCNNGC 4 cut(s) 461, 519, 805, 817
CfoI GCGC 4 cut(s) 108, 577, 744, 924
Cfr13I GGNCC 5 cut(s) 182, 407, 482, 796, 1015
Cfr9I CCCGGG 1 cut(s) 224
CseI GACGC 1 cut(s) 1010
Csp6I GTAC 3 cut(s) 205, 607, 887
CviAII CATG 3 cut(s) 289, 330, 343
CviQI GTAC 3 cut(s) 205, 607, 887
DdeI CTNAG 5 cut(s) 372, 636, 873, 891, 954
DpnI GATC 4 cut(s) 370, 617, 668, 903
DpnII GATC 4 cut(s) 368, 615, 666, 901
Eam1104I CTCTTC 1 cut(s) 597
EarI CTCTTC 1 cut(s) 597
EciI GGCGGA 1 cut(s) 809
Eco130I CCWWGG 1 cut(s) 781
Eco147I AGGCCT 1 cut(s) 146
Eco24I GRGCYC 1 cut(s) 121
Eco47I GGWCC 1 cut(s) 796
Eco57I CTGAAG 3 cut(s) 324, 632, 647
Eco88I CYCGRG 2 cut(s) 224, 349
EcoO109I RGGNCCY 1 cut(s) 1015
EcoT14I CCWWGG 1 cut(s) 781
EcoT38I GRGCYC 1 cut(s) 121
ErhI CCWWGG 1 cut(s) 781
FaeI CATG 3 cut(s) 292, 333, 346
FalI AAGNNNNNCTT 2 cut(s) 237, 269
FaqI GGGAC 2 cut(s) 220, 952
FatI CATG 3 cut(s) 288, 329, 342
FauI CCCGC 1 cut(s) 452
FblI GTMKAC 1 cut(s) 645
Fnu4HI GCNGC 6 cut(s) 210, 242, 327, 808, 910, 1028
FokI GGATG 1 cut(s) 95
FriOI GRGCYC 1 cut(s) 121
Fsp4HI GCNGC 6 cut(s) 210, 242, 327, 808, 910, 1028
FspBI CTAG 4 cut(s) 392, 686, 804, 843
FspI TGCGCA 1 cut(s) 576
GlaI GCGC 4 cut(s) 107, 576, 743, 923
GluI GCNGC 6 cut(s) 210, 242, 327, 808, 910, 1028
GsaI CCCAGC 2 cut(s) 241, 368
GsuI CTGGAG 1 cut(s) 999
HaeIII GGCC 6 cut(s) 146, 184, 408, 483, 912, 1016
HapII CCGG 1 cut(s) 225
HgaI GACGC 1 cut(s) 1010
HhaI GCGC 4 cut(s) 108, 577, 744, 924
Hin1II CATG 3 cut(s) 292, 333, 346
Hin6I GCGC 4 cut(s) 106, 575, 742, 922
HinP1I GCGC 4 cut(s) 106, 575, 742, 922
HincII GTYRAC 3 cut(s) 379, 681, 859
HindII GTYRAC 3 cut(s) 379, 681, 859
HindIII AAGCTT 1 cut(s) 263
HinfI GANTC 5 cut(s) 292, 554, 656, 723, 877
HpaII CCGG 1 cut(s) 225
HphI GGTGA 1 cut(s) 744
Hpy166II GTNNAC 7 cut(s) 163, 217, 379, 646, 681, 776, 859
Hpy188I TCNGA 6 cut(s) 373, 474, 637, 666, 874, 955
Hpy188III TCNNGA 6 cut(s) 269, 392, 670, 850, 916, 969
Hpy8I GTNNAC 7 cut(s) 163, 217, 379, 646, 681, 776, 859
Hpy99I CGWCG 1 cut(s) 446
HpyAV CCTTC 3 cut(s) 56, 671, 960
HpyCH4III ACNGT 2 cut(s) 626, 856
HpyCH4V TGCA 5 cut(s) 212, 251, 320, 815, 1061
HpyF10VI GCNNNNNNNGC 6 cut(s) 238, 326, 405, 581, 800, 816
HpyF3I CTNAG 5 cut(s) 372, 636, 873, 891, 954
Hsp92II CATG 3 cut(s) 292, 333, 346
HspAI GCGC 4 cut(s) 106, 575, 742, 922
Kzo9I GATC 4 cut(s) 368, 615, 666, 901
LmnI GCTCC 1 cut(s) 1045
Lsp1109I GCAGC 1 cut(s) 196
LweI GCATC 3 cut(s) 117, 238, 891
MaeI CTAG 4 cut(s) 392, 686, 804, 843
MaeIII GTNAC 1 cut(s) 332
MalI GATC 4 cut(s) 370, 617, 668, 903
MbiI CCGCTC 1 cut(s) 810
MboI GATC 4 cut(s) 368, 615, 666, 901
MboII GAAGA 8 cut(s) 92, 317, 464, 614, 625, 725, 758, 1047
MflI RGATCY 2 cut(s) 368, 666
MhlI GDGCHC 1 cut(s) 121
MluCI AATT 5 cut(s) 16, 475, 522, 538, 649
MlyI GAGTC 2 cut(s) 548, 717
MmeI TCCRAC 1 cut(s) 510
MseI TTAA 3 cut(s) 356, 525, 702
MslI CAYNNNNRTG 2 cut(s) 585, 993
MspA1I CMGCKG 2 cut(s) 364, 909
MspCI CTTAAG 1 cut(s) 355
MspI CCGG 1 cut(s) 225
MspR9I CCNGG 2 cut(s) 225, 226
MvnI CGCG 1 cut(s) 1004
MwoI GCNNNNNNNGC 6 cut(s) 238, 326, 405, 581, 800, 816
NciI CCSGG 2 cut(s) 225, 226
NdeII GATC 4 cut(s) 368, 615, 666, 901
NheI GCTAGC 1 cut(s) 803
NlaIII CATG 3 cut(s) 292, 333, 346
NlaIV GGNNCC 1 cut(s) 1017
NmuCI GTSAC 1 cut(s) 332
NsbI TGCGCA 1 cut(s) 576
NspI RCATGY 2 cut(s) 333, 346
OliI CACNNNNGTG 1 cut(s) 585
PceI AGGCCT 1 cut(s) 146
PfeI GAWTC 3 cut(s) 292, 656, 877
PkrI GCNGC 6 cut(s) 211, 243, 328, 809, 911, 1029
PleI GAGTC 2 cut(s) 548, 717
PpsI GAGTC 2 cut(s) 548, 717
PspFI CCCAGC 2 cut(s) 237, 364
PspN4I GGNNCC 1 cut(s) 1017
PspPI GGNCC 5 cut(s) 182, 407, 482, 796, 1015
PstI CTGCAG 1 cut(s) 214
PsuI RGATCY 2 cut(s) 368, 666
PvuII CAGCTG 1 cut(s) 364
RsaI GTAC 3 cut(s) 206, 608, 888
RsaNI GTAC 3 cut(s) 205, 607, 887
RseI CAYNNNNRTG 2 cut(s) 585, 993
SaqAI TTAA 3 cut(s) 356, 525, 702
SatI GCNGC 6 cut(s) 210, 242, 327, 808, 910, 1028
Sau3AI GATC 4 cut(s) 368, 615, 666, 901
Sau96I GGNCC 5 cut(s) 182, 407, 482, 796, 1015
SchI GAGTC 2 cut(s) 548, 717
ScrFI CCNGG 2 cut(s) 225, 226
SduI GDGCHC 1 cut(s) 121
SfaNI GCATC 3 cut(s) 117, 238, 891
SfcI CTRYAG 2 cut(s) 148, 210
SinI GGWCC 1 cut(s) 796
SmaI CCCGGG 1 cut(s) 226
SmiMI CAYNNNNRTG 2 cut(s) 585, 993
SmlI CTYRAG 1 cut(s) 355
SmoI CTYRAG 1 cut(s) 355
Sse9I AATT 5 cut(s) 16, 475, 522, 538, 649
SseBI AGGCCT 1 cut(s) 146
SsiI CCGC 7 cut(s) 242, 326, 459, 794, 808, 909, 1028
SspMI CTAG 4 cut(s) 392, 686, 804, 843
StuI AGGCCT 1 cut(s) 146
StyD4I CCNGG 2 cut(s) 223, 224
StyI CCWWGG 1 cut(s) 781
TaaI ACNGT 2 cut(s) 626, 856
TaqI TCGA 2 cut(s) 654, 849
TasI AATT 5 cut(s) 16, 475, 522, 538, 649
TauI GCSGC 5 cut(s) 244, 329, 810, 912, 1030
TfiI GAWTC 3 cut(s) 292, 656, 877
Tru1I TTAA 3 cut(s) 356, 525, 702
Tru9I TTAA 3 cut(s) 356, 525, 702
TscAI CASTG 2 cut(s) 341, 714
TseFI GTSAC 1 cut(s) 332
TseI GCWGC 1 cut(s) 209
Tsp45I GTSAC 1 cut(s) 332
TspDTI ATGAA 7 cut(s) 20, 93, 305, 538, 737, 977, 1049
TspGWI ACGGA 2 cut(s) 180, 272
TspMI CCCGGG 1 cut(s) 224
TspRI CASTG 2 cut(s) 341, 714
Vha464I CTTAAG 1 cut(s) 355
VpaK11BI GGWCC 1 cut(s) 796
XapI RAATTY 1 cut(s) 475
XbaI TCTAGA 1 cut(s) 391
XceI RCATGY 2 cut(s) 333, 346
XcmI CCANNNNNNNNNTGG 1 cut(s) 783
XmaI CCCGGG 1 cut(s) 224
XmiI GTMKAC 1 cut(s) 645
XspI CTAG 4 cut(s) 392, 686, 804, 843
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.