Rh4CG350000

Fruit protein

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
Physical Location & Seq
Reverse (-)
60746134 .. 60747451
1318 bp
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UTR
Exon/CDS
Intron
Rh4CG350000.1

Sequence Viewer

Length: 183 bp
ATGATTCTGATTGCGAGCACTCTGTGGTTACATTTTCAGGCTGCTTTTACTAGAGCCAAGCAAGTTTATAACCCTCTCTCCACCGCTGCTGTTCTCTGTGGGCAGAAACAGATGGCTGAGGAAGTTACCTCAATTCTTTTAGCAGATGGAGTTGCAAGTGAAAAAATACTGAAGAATTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

60

Amino Acids

6.58

Weight (kDa)

7.92

Isoelectric Point (pI)

31.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 69
AciI CCGC 1 cut(s) 84
AcsI RAATTY 1 cut(s) 175
AdeI CACNNNGTG 1 cut(s) 24
Alw21I GWGCWC 1 cut(s) 20
ApeKI GCWGC 2 cut(s) 41, 86
ApoI RAATTY 1 cut(s) 175
Asp700I GAANNNNTTC 1 cut(s) 176
Bbv12I GWGCWC 1 cut(s) 20
BbvCI CCTCAGC 1 cut(s) 117
BbvI GCAGC 2 cut(s) 28, 73
BccI CCATC 2 cut(s) 106, 140
BfaI CTAG 1 cut(s) 51
BisI GCNGC 2 cut(s) 42, 87
BlsI GCNGC 2 cut(s) 43, 88
Bpu10I CCTNAGC 1 cut(s) 117
BsaXI ACNNNNNCTCC 2 cut(s) 62, 92
BseMII CTCAG 1 cut(s) 108
BseXI GCAGC 2 cut(s) 28, 73
BsiHKAI GWGCWC 1 cut(s) 20
Bsp1286I GDGCHC 1 cut(s) 20
BspACI CCGC 1 cut(s) 84
BspCNI CTCAG 1 cut(s) 109
BstC8I GCNNGC 1 cut(s) 16
BstDEI CTNAG 1 cut(s) 117
BstV1I GCAGC 2 cut(s) 28, 73
Cac8I GCNNGC 1 cut(s) 16
CviJI RGCY 3 cut(s) 41, 56, 116
CviKI_1 RGCY 3 cut(s) 41, 56, 116
DdeI CTNAG 1 cut(s) 117
DraIII CACNNNGTG 1 cut(s) 24
FaiI YATR 1 cut(s) 69
Fnu4HI GCNGC 2 cut(s) 42, 87
Fsp4HI GCNGC 2 cut(s) 42, 87
FspBI CTAG 1 cut(s) 51
GluI GCNGC 2 cut(s) 42, 87
HinfI GANTC 1 cut(s) 4
Hpy188I TCNGA 1 cut(s) 9
HpyCH4V TGCA 1 cut(s) 155
HpyF3I CTNAG 1 cut(s) 117
LpnPI CCDG 1 cut(s) 23
Lsp1109I GCAGC 2 cut(s) 28, 73
MaeI CTAG 1 cut(s) 51
MaeIII GTNAC 2 cut(s) 27, 124
MhlI GDGCHC 1 cut(s) 20
MluCI AATT 2 cut(s) 132, 175
MnlI CCTC 3 cut(s) 84, 112, 139
MroXI GAANNNNTTC 1 cut(s) 176
MspA1I CMGCKG 1 cut(s) 86
PdmI GAANNNNTTC 1 cut(s) 176
PfeI GAWTC 1 cut(s) 4
PkrI GCNGC 2 cut(s) 43, 88
PsiI TTATAA 1 cut(s) 69
SatI GCNGC 2 cut(s) 42, 87
SduI GDGCHC 1 cut(s) 20
SetI ASST 1 cut(s) 131
SgeI CNNG 6 cut(s) 27, 50, 63, 70, 74, 168
Sse9I AATT 2 cut(s) 132, 175
SsiI CCGC 1 cut(s) 84
SspMI CTAG 1 cut(s) 51
TasI AATT 2 cut(s) 132, 175
TfiI GAWTC 1 cut(s) 4
TseI GCWGC 2 cut(s) 41, 86
XapI RAATTY 1 cut(s) 175
XmnI GAANNNNTTC 1 cut(s) 176
XspI CTAG 1 cut(s) 51
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.