Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0000824

Physical Location & Seq

Genomic Coordinates Reverse (-)

7276293 .. 7276754

Gene Structure 462 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGGGCTTGATAACCGAAACCTGGAAGCGATGCAAATCAATAGGCCGGGGTCGTCCTACTAATATTCATGGAATGGTGCCTGCTCTGACCACCAAGAGCAAGTCATGCCCGAACATCAACCTCGGGATACCCGAGGAAAAGCGTGCGAGCAAGCGCCAAGTGGCTCCTGAAGGCTGCTTTACAGTCTATGTCGGTTCCCAAAAGCAAAGGTTTGTGGTCAAAACGGAACACGCAAACCATCCTCTCTTCAAGATGCTACTCGAAGAAGCCGAGTCTGAATTTGGGTATGACAGTCGAGGTCCTCTTGTGCTTCCTTGTAATGTTGAGATATTCTACAAGGTTTTGATGGAAATGGACGATTGTGGTGACCAAAAGGTTCCTCAAGGGCGTGGCTTGGCTAAGCGTTATGGCTCTTACCATCATCTTACCCCGTCTAGGATGGTTGCCATCAACCAGTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Auxin_inducible

Protein Analysis

154

Amino Acids

17.26

Weight (kDa)

9.28

Isoelectric Point (pI)

53.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Auxin_inducible	PF02519	35 - 115	2.3e-24	Auxin responsive protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000824)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50760
fragaria_vesca	FvH4_4g23230 FvH4_5g08770 FvH4_5g08780 FvH4_5g08790 FvH4_5g08800
malus_domestica	MD06G1137300.v1.1 MD13G1123500.v1.1 MD14G1152100.v1.1 MD16G1124300.v1.1
prunus_persica	Prupe.1G221300_v2.0.a1 Prupe.5G147100_v2.0.a1
pyrus_communis	pycom06g12850 pycom13g10810 pycom16g10620
rosa_chinensis	RchiOBHm_Chr3g0452541 RchiOBHm_Chr3g0452551 RchiOBHm_Chr4g0429601 RchiOBHm_Chr7g0189471 RchiOBHm_Chr7g0189491 RchiOBHm_Chr7g0189501
rosa_laevigata	RLG00000004357 RLG00000004607 RLG00000004608 RLG00000004609 RLG00000007059 RLG00000025587 RLG00000025591
rosa_multiflora	Rmu_sc0000608.1_g000004 Rmu_sc0000608.1_g000011 Rmu_sc0001282.1_g000027 Rmu_sc0001282.1_g000030 Rmu_sc0006590.1_g000014 Rmu_sc0013109.1_g000002
rosa_roxburghii	Rroxscaffold_3G00265370 Rroxscaffold_3G00265400 Rroxscaffold_5G00371290
rosa_rugosa	Rorug02G0641200 Rorug04G0237300 Rorug06G0498200 Rorug06G0498300 Rorug06G0498400
rosa_samantha	Rh3AG043600 Rh3BG045300 Rh3CG043900 Rh3DG044700 Rh4AG293100 Rh4BG298800 Rh4CG314300 Rh4DG295700 Rh7AG103000 Rh7AG103200 Rh7AG103300 Rh7AG126200 Rh7BG105700 Rh7BG105800 Rh7BG105900 Rh7CG107600 Rh7CG107800 Rh7CG107900 Rh7CG108000 Rh7DG105100 Rh7DG105200 Rh7DG105400
rosa_wichuraiana	Rw3G003380 Rw4G025370 Rw7G008910 Rw7G008920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	76
AcsI	RAATTY	1 cut(s)	278
AcuI	CTGAAG	1 cut(s)	189
AfiI	CCNNNNNNNGG	2 cut(s)	21, 435
AgsI	TTSAA	1 cut(s)	250
AjnI	CCWGG	1 cut(s)	20
Ama87I	CYCGRG	2 cut(s)	122, 131
AoxI	GGCC	1 cut(s)	43
ApeKI	GCWGC	1 cut(s)	174
ApoI	RAATTY	1 cut(s)	278
AspLEI	GCGC	1 cut(s)	156
AspS9I	GGNCC	1 cut(s)	299
AsuC2I	CCSGG	1 cut(s)	47
AsuHPI	GGTGA	1 cut(s)	377
AvaI	CYCGRG	2 cut(s)	122, 131
AvaII	GGWCC	1 cut(s)	299
BanI	GGYRCC	1 cut(s)	76
BbvI	GCAGC	1 cut(s)	161
BccI	CCATC	5 cut(s)	246, 340, 426, 433, 455
BciT130I	CCWGG	1 cut(s)	22
BciVI	GTATCC	1 cut(s)	120
BcnI	CCSGG	1 cut(s)	47
BfaI	CTAG	2 cut(s)	435, 460
BfoI	RGCGCY	1 cut(s)	157
BfuI	GTATCC	1 cut(s)	120
BisI	GCNGC	1 cut(s)	175
BlpI	GCTNAGC	1 cut(s)	399
BlsI	GCNGC	1 cut(s)	176
Bme1390I	CCNGG	2 cut(s)	22, 47
Bme18I	GGWCC	1 cut(s)	299
BmeT110I	CYCGRG	2 cut(s)	122, 131
BmgT120I	GGNCC	1 cut(s)	299
BmiI	GGNNCC	4 cut(s)	78, 165, 196, 378
BmrFI	CCNGG	2 cut(s)	22, 47
BmsI	GCATC	2 cut(s)	20, 243
Bpu1102I	GCTNAGC	1 cut(s)	399
BpuEI	CTTGAG	1 cut(s)	366
BpuMI	CCSGG	1 cut(s)	47
BsaBI	GATNNNNATC	1 cut(s)	34
BsaJI	CCNNGG	3 cut(s)	46, 121, 132
Bsc4I	CCNNNNNNNGG	2 cut(s)	21, 435
Bse1I	ACTGG	1 cut(s)	454
Bse8I	GATNNNNATC	1 cut(s)	34
BseBI	CCWGG	1 cut(s)	22
BseDI	CCNNGG	3 cut(s)	46, 121, 132
BseGI	GGATG	2 cut(s)	238, 444
BseJI	GATNNNNATC	1 cut(s)	34
BseLI	CCNNNNNNNGG	2 cut(s)	21, 435
BseNI	ACTGG	1 cut(s)	454
BseXI	GCAGC	1 cut(s)	161
BshFI	GGCC	1 cut(s)	45
BshNI	GGYRCC	1 cut(s)	76
BsiHKCI	CYCGRG	2 cut(s)	122, 131
BsiSI	CCGG	1 cut(s)	46
BslI	CCNNNNNNNGG	2 cut(s)	21, 435
BsnI	GGCC	1 cut(s)	45
BsoBI	CYCGRG	2 cut(s)	122, 131
Bsp1720I	GCTNAGC	1 cut(s)	399
BspANI	GGCC	1 cut(s)	45
BspLI	GGNNCC	4 cut(s)	78, 165, 196, 378
BspT107I	GGYRCC	1 cut(s)	76
BsrI	ACTGG	1 cut(s)	454
BssECI	CCNNGG	3 cut(s)	46, 121, 132
Bst2UI	CCWGG	1 cut(s)	22
Bst4CI	ACNGT	2 cut(s)	184, 293
Bst6I	CTCTTC	1 cut(s)	251
BstAPI	GCANNNNNTGC	1 cut(s)	105
BstC8I	GCNNGC	4 cut(s)	81, 144, 148, 152
BstDEI	CTNAG	1 cut(s)	399
BstEII	GGTNACC	1 cut(s)	365
BstF5I	GGATG	2 cut(s)	238, 444
BstH2I	RGCGCY	1 cut(s)	157
BstHHI	GCGC	1 cut(s)	156
BstMWI	GCNNNNNNNGC	1 cut(s)	105
BstNI	CCWGG	1 cut(s)	22
BstPI	GGTNACC	1 cut(s)	365
BstSCI	CCNGG	2 cut(s)	20, 45
BstV1I	GCAGC	1 cut(s)	161
BsuI	GTATCC	1 cut(s)	120
BsuRI	GGCC	1 cut(s)	45
BtgZI	GCGATG	1 cut(s)	43
BtsCI	GGATG	2 cut(s)	238, 444
Cac8I	GCNNGC	4 cut(s)	81, 144, 148, 152
CfoI	GCGC	1 cut(s)	156
Cfr13I	GGNCC	1 cut(s)	299
CviAII	CATG	2 cut(s)	68, 105
CviJI	RGCY	8 cut(s)	6, 45, 164, 174, 269, 393, 398, 411
CviKI_1	RGCY	8 cut(s)	6, 45, 164, 174, 269, 393, 398, 411
DdeI	CTNAG	1 cut(s)	399
Eam1104I	CTCTTC	1 cut(s)	251
EarI	CTCTTC	1 cut(s)	251
Eco47I	GGWCC	1 cut(s)	299
Eco57I	CTGAAG	1 cut(s)	189
Eco88I	CYCGRG	2 cut(s)	122, 131
Eco91I	GGTNACC	1 cut(s)	365
EcoO109I	RGGNCCY	1 cut(s)	299
EcoO65I	GGTNACC	1 cut(s)	365
EcoRII	CCWGG	1 cut(s)	20
FaeI	CATG	2 cut(s)	71, 108
FaiI	YATR	5 cut(s)	69, 106, 189, 288, 408
FatI	CATG	2 cut(s)	67, 104
Fnu4HI	GCNGC	1 cut(s)	175
FokI	GGATG	2 cut(s)	225, 451
Fsp4HI	GCNGC	1 cut(s)	175
FspBI	CTAG	2 cut(s)	435, 460
GlaI	GCGC	1 cut(s)	155
GluI	GCNGC	1 cut(s)	175
HaeII	RGCGCY	1 cut(s)	157
HaeIII	GGCC	1 cut(s)	45
HapII	CCGG	1 cut(s)	46
HhaI	GCGC	1 cut(s)	156
Hin1II	CATG	2 cut(s)	71, 108
Hin6I	GCGC	1 cut(s)	154
HinP1I	GCGC	1 cut(s)	154
HinfI	GANTC	1 cut(s)	272
HpaII	CCGG	1 cut(s)	46
HphI	GGTGA	1 cut(s)	377
Hpy188I	TCNGA	2 cut(s)	87, 277
Hpy188III	TCNNGA	3 cut(s)	124, 167, 250
HpyAV	CCTTC	1 cut(s)	164
HpyCH4III	ACNGT	2 cut(s)	184, 293
HpyCH4V	TGCA	1 cut(s)	33
HpyF10VI	GCNNNNNNNGC	1 cut(s)	105
HpyF3I	CTNAG	1 cut(s)	399
Hsp92II	CATG	2 cut(s)	71, 108
HspAI	GCGC	1 cut(s)	154
LmnI	GCTCC	1 cut(s)	169
LpnPI	CCDG	5 cut(s)	7, 34, 59, 93, 180
Lsp1109I	GCAGC	1 cut(s)	161
LweI	GCATC	2 cut(s)	20, 243
MaeI	CTAG	2 cut(s)	435, 460
MaeIII	GTNAC	1 cut(s)	365
MboII	GAAGA	2 cut(s)	238, 275
MluCI	AATT	1 cut(s)	278
MlyI	GAGTC	1 cut(s)	281
MnlI	CCTC	6 cut(s)	127, 131, 252, 290, 312, 390
MspI	CCGG	1 cut(s)	46
MspR9I	CCNGG	2 cut(s)	22, 47
MvaI	CCWGG	1 cut(s)	22
MwoI	GCNNNNNNNGC	1 cut(s)	105
NciI	CCSGG	1 cut(s)	47
NlaIII	CATG	2 cut(s)	71, 108
NlaIV	GGNNCC	4 cut(s)	78, 165, 196, 378
NmeAIII	GCCGAG	1 cut(s)	295
NmuCI	GTSAC	1 cut(s)	365
PcsI	WCGNNNNNNNCGW	2 cut(s)	129, 267
PkrI	GCNGC	1 cut(s)	176
PleI	GAGTC	1 cut(s)	280
PpsI	GAGTC	1 cut(s)	280
PpuMI	RGGWCCY	1 cut(s)	299
Psp5II	RGGWCCY	1 cut(s)	299
Psp6I	CCWGG	1 cut(s)	20
PspEI	GGTNACC	1 cut(s)	365
PspGI	CCWGG	1 cut(s)	20
PspN4I	GGNNCC	4 cut(s)	78, 165, 196, 378
PspPI	GGNCC	1 cut(s)	299
PspPPI	RGGWCCY	1 cut(s)	299
SatI	GCNGC	1 cut(s)	175
Sau96I	GGNCC	1 cut(s)	299
SchI	GAGTC	1 cut(s)	281
ScrFI	CCNGG	2 cut(s)	22, 47
SetI	ASST	6 cut(s)	23, 123, 212, 301, 342, 378
SfaNI	GCATC	2 cut(s)	20, 243
SinI	GGWCC	1 cut(s)	299
SmlI	CTYRAG	1 cut(s)	381
SmoI	CTYRAG	1 cut(s)	381
Sse9I	AATT	1 cut(s)	278
SspI	AATATT	1 cut(s)	64
SspMI	CTAG	2 cut(s)	435, 460
StyD4I	CCNGG	2 cut(s)	20, 45
TaaI	ACNGT	2 cut(s)	184, 293
TaqI	TCGA	2 cut(s)	261, 295
TasI	AATT	1 cut(s)	278
TseFI	GTSAC	1 cut(s)	365
TseI	GCWGC	1 cut(s)	174
Tsp45I	GTSAC	1 cut(s)	365
TspDTI	ATGAA	1 cut(s)	56
TspGWI	ACGGA	1 cut(s)	239
VpaK11BI	GGWCC	1 cut(s)	299
XapI	RAATTY	1 cut(s)	278
XspI	CTAG	2 cut(s)	435, 460

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.