pycom17g09510

Belongs to the glycosyltransferase 2 family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
Physical Location & Seq
Forward (+)
7247876 .. 7248153
278 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 228 bp
ATGACTCTGGCCACGGCCACGTTGGGTTTGCAACCACCGGCTTTTGGGGTGAATGGGGCGGGCATCGGGGAGATGATGTGTAGTGTGTGGATGGTGCTATGTTTTTGGCCATTTGTTAAAGGTTTGTTTGGGAAGGGTAAATATGGGATTCCAATGGCCACTATAGTTAAGTCAGCTGTGTTGGCTTTGCTCTTCATGCACTTCTGCCCTAAGAACATTGCATCATGA

Protein Analysis

76

Amino Acids

7.98

Weight (kDa)

9.3

Isoelectric Point (pI)

27.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000454)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G32530 AT2G32540 AT2G32620 AT2G32620 AT2G32620 AT2G32620 AT4G15290 AT4G15320 AT4G15320 AT4G15320 AT4G15320 AT4G15320
fragaria_vesca FvH4_6g42780 FvH4_6g42780 FvH4_6g42780 FvH4_6g42780 FvH4_6g42780 FvH4_6g42780 FvH4_6g42780 FvH4_6g42800 FvH4_6g42840 FvH4_6g42840
malus_domestica MD09G1072200.v1.1 MD17G1099500.v1.1 MD17G1099600.v1.1 MD17G1099800.v1.1
prunus_persica Prupe.3G214200_v2.0.a1 Prupe.3G214200_v2.0.a1 Prupe.3G214200_v2.0.a1 Prupe.3G214200_v2.0.a1 Prupe.3G214200_v2.0.a1 Prupe.3G214200_v2.0.a1 Prupe.3G214400_v2.0.a1 Prupe.3G214400_v2.0.a1
pyrus_communis pycom09g03400 pycom17g09490 pycom17g09510
rosa_chinensis RchiOBHm_Chr2g0158721 RchiOBHm_Chr2g0158731 RchiOBHm_Chr2g0158741 RchiOBHm_Chr2g0158761 RchiOBHm_Chr2g0158771
rosa_laevigata RLG00000021109 RLG00000021110 RLG00000021111
rosa_multiflora Rmu_co8470225.1_g000001 Rmu_sc0003664.1_g000005 Rmu_sc0003664.1_g000006 Rmu_sc0003664.1_g000007 Rmu_sc0003664.1_g000012 Rmu_sc0004188.1_g000001 Rmu_sc0004188.1_g000006 Rmu_sc0004188.1_g000008 Rmu_sc0024429.1_g000001
rosa_roxburghii Rroxscaffold_2G00091020 Rroxscaffold_2G00091030 Rroxscaffold_2G00091040 Rroxscaffold_2G00091050 Rroxscaffold_2G00091060 Rroxscaffold_2G00091080
rosa_rugosa Rorug02G0471500 Rorug02G0471600 Rorug02G0471800 Rorug02G0471900 Rorug02G0471900 Rorug02G0472200 Rorug02G0472300 Rorug07G0260700
rosa_samantha Rh1BG072200 Rh2AG537300 Rh2AG537400 Rh2AG537500 Rh2AG538000 Rh2AG538100 Rh2AG538200 Rh2BG550500 Rh2BG550600 Rh2BG550800 Rh2CG521000 Rh2CG521100 Rh2CG521200 Rh2CG521300 Rh2DG560200 Rh2DG560300 Rh2DG560400 Rh2DG560500 Rh2DG560600
rosa_wichuraiana Rw2G044490 Rw2G044500 Rw2G044510 Rw2G044520 Rw2G044530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 59
AcoI YGGCCR 4 cut(s) 9, 15, 107, 156
AfiI CCNNNNNNNGG 1 cut(s) 44
AluBI AGCT 1 cut(s) 176
AluI AGCT 1 cut(s) 176
AoxI GGCC 4 cut(s) 9, 15, 107, 156
AsuHPI GGTGA 1 cut(s) 61
BalI TGGCCA 3 cut(s) 11, 109, 158
BccI CCATC 1 cut(s) 85
BceAI ACGGC 1 cut(s) 30
BfmI CTRYAG 1 cut(s) 162
BmsI GCATC 1 cut(s) 72
BsaJI CCNNGG 1 cut(s) 12
BsaXI ACNNNNNCTCC 2 cut(s) 62, 92
Bsc4I CCNNNNNNNGG 1 cut(s) 44
Bse118I RCCGGY 1 cut(s) 37
Bse3DI GCAATG 1 cut(s) 216
BseDI CCNNGG 1 cut(s) 12
BseGI GGATG 1 cut(s) 96
BseLI CCNNNNNNNGG 1 cut(s) 44
BseMI GCAATG 1 cut(s) 216
BshFI GGCC 4 cut(s) 11, 17, 109, 158
BsiSI CCGG 1 cut(s) 38
BslI CCNNNNNNNGG 1 cut(s) 44
BsnI GGCC 4 cut(s) 11, 17, 109, 158
BspACI CCGC 1 cut(s) 59
BspANI GGCC 4 cut(s) 11, 17, 109, 158
BspHI TCATGA 1 cut(s) 224
BspQI GCTCTTC 1 cut(s) 197
BsrDI GCAATG 1 cut(s) 216
BsrFI RCCGGY 1 cut(s) 37
BssAI RCCGGY 1 cut(s) 37
BssECI CCNNGG 1 cut(s) 12
Bst6I CTCTTC 1 cut(s) 197
BstC8I GCNNGC 1 cut(s) 61
BstDEI CTNAG 1 cut(s) 210
BstDSI CCRYGG 1 cut(s) 12
BstF5I GGATG 1 cut(s) 96
BstMWI GCNNNNNNNGC 2 cut(s) 182, 196
BstSFI CTRYAG 1 cut(s) 162
BsuRI GGCC 4 cut(s) 11, 17, 109, 158
BtgI CCRYGG 1 cut(s) 12
BtsCI GGATG 1 cut(s) 96
Cac8I GCNNGC 1 cut(s) 61
CciI TCATGA 1 cut(s) 224
Cfr10I RCCGGY 1 cut(s) 37
CviAII CATG 2 cut(s) 196, 225
CviJI RGCY 7 cut(s) 11, 17, 41, 109, 158, 176, 185
CviKI_1 RGCY 7 cut(s) 11, 17, 41, 109, 158, 176, 185
DdeI CTNAG 1 cut(s) 210
EaeI YGGCCR 4 cut(s) 9, 15, 107, 156
Eam1104I CTCTTC 1 cut(s) 197
EarI CTCTTC 1 cut(s) 197
FaeI CATG 2 cut(s) 199, 228
FaiI YATR 5 cut(s) 100, 144, 164, 197, 226
FatI CATG 2 cut(s) 195, 224
FauI CCCGC 1 cut(s) 52
FokI GGATG 1 cut(s) 103
HaeIII GGCC 4 cut(s) 11, 17, 109, 158
HapII CCGG 1 cut(s) 38
Hin1II CATG 2 cut(s) 199, 228
HinfI GANTC 2 cut(s) 4, 148
HpaII CCGG 1 cut(s) 38
HphI GGTGA 1 cut(s) 61
Hpy188III TCNNGA 1 cut(s) 225
HpyAV CCTTC 1 cut(s) 127
HpyCH4IV ACGT 1 cut(s) 20
HpyCH4V TGCA 3 cut(s) 31, 199, 221
HpyF10VI GCNNNNNNNGC 2 cut(s) 182, 196
HpyF3I CTNAG 1 cut(s) 210
HpySE526I ACGT 1 cut(s) 20
Hsp92II CATG 2 cut(s) 199, 228
LguI GCTCTTC 1 cut(s) 197
LpnPI CCDG 1 cut(s) 51
LweI GCATC 1 cut(s) 72
MaeII ACGT 1 cut(s) 20
MboII GAAGA 1 cut(s) 184
MlsI TGGCCA 3 cut(s) 11, 109, 158
MluNI TGGCCA 3 cut(s) 11, 109, 158
Mox20I TGGCCA 3 cut(s) 11, 109, 158
MscI TGGCCA 3 cut(s) 11, 109, 158
MseI TTAA 2 cut(s) 117, 168
Msp20I TGGCCA 3 cut(s) 11, 109, 158
MspA1I CMGCKG 1 cut(s) 176
MspI CCGG 1 cut(s) 38
MwoI GCNNNNNNNGC 2 cut(s) 182, 196
NlaIII CATG 2 cut(s) 199, 228
PagI TCATGA 1 cut(s) 224
PciSI GCTCTTC 1 cut(s) 197
PfeI GAWTC 1 cut(s) 148
PvuII CAGCTG 1 cut(s) 176
SapI GCTCTTC 1 cut(s) 197
SaqAI TTAA 2 cut(s) 117, 168
SetI ASST 3 cut(s) 23, 124, 178
SfaNI GCATC 1 cut(s) 72
SfcI CTRYAG 1 cut(s) 162
SgeI CNNG 7 cut(s) 20, 25, 31, 50, 72, 79, 208
SsiI CCGC 1 cut(s) 59
TaiI ACGT 1 cut(s) 23
TfiI GAWTC 1 cut(s) 148
Tru1I TTAA 2 cut(s) 117, 168
Tru9I TTAA 2 cut(s) 117, 168
TspDTI ATGAA 1 cut(s) 184
XcmI CCANNNNNNNNNTGG 1 cut(s) 19
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.