pycom17g21610

Cucumber peeling cupredoxin-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0001282
Physical Location & Seq
Forward (+)
19981427 .. 19981645
219 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 219 bp
ATGGAGAGCAAGGTGGTGATTGTTTTTGGTGTGATTGTGGCACTGTTTTTGCACAGTGTGGCAGGGCAGAAATTACATGTGGTCGGAGGTATCATAGGAAGTGAATCCACTGTGAACATCACCCCGGCGTCTCAGCCTCCCCTGGATTCTTCTTCACCTGCTGTTTTGGCTAGTTTCACTTTGTCGGTCGCGGCTCTTGTCGTGGGTTTGTTCTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

73

Amino Acids

7.32

Weight (kDa)

5.97

Isoelectric Point (pI)

44.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 166
Acc36I ACCTGC 1 cut(s) 166
AccII CGCG 1 cut(s) 191
AciI CCGC 1 cut(s) 191
AcyI GRCGYC 1 cut(s) 128
AdeI CACNNNGTG 1 cut(s) 58
AflIII ACRYGT 1 cut(s) 76
AjnI CCWGG 1 cut(s) 141
Alw26I GTCTC 1 cut(s) 135
AsuC2I CCSGG 1 cut(s) 125
AsuHPI GGTGA 3 cut(s) 28, 112, 147
BciT130I CCWGG 1 cut(s) 143
BcnI CCSGG 1 cut(s) 125
BcoDI GTCTC 1 cut(s) 135
BfaI CTAG 1 cut(s) 171
BfuAI ACCTGC 1 cut(s) 166
BisI GCNGC 1 cut(s) 192
BlsI GCNGC 1 cut(s) 193
Bme1390I CCNGG 2 cut(s) 125, 143
BmrFI CCNGG 2 cut(s) 125, 143
BpuMI CCSGG 1 cut(s) 125
BsaHI GRCGYC 1 cut(s) 128
BsaJI CCNNGG 2 cut(s) 123, 141
BseBI CCWGG 1 cut(s) 143
BseDI CCNNGG 2 cut(s) 123, 141
BseMII CTCAG 1 cut(s) 146
Bsh1236I CGCG 1 cut(s) 191
Bsh1285I CGRYCG 1 cut(s) 189
BsiEI CGRYCG 1 cut(s) 189
BsiSI CCGG 1 cut(s) 125
BsmAI GTCTC 1 cut(s) 135
BsmBI CGTCTC 1 cut(s) 135
BspACI CCGC 1 cut(s) 191
BspCNI CTCAG 1 cut(s) 145
BspFNI CGCG 1 cut(s) 191
BspMI ACCTGC 1 cut(s) 166
BssECI CCNNGG 2 cut(s) 123, 141
BssNI GRCGYC 1 cut(s) 128
Bst2UI CCWGG 1 cut(s) 143
Bst4CI ACNGT 3 cut(s) 45, 56, 112
BstACI GRCGYC 1 cut(s) 128
BstDEI CTNAG 1 cut(s) 132
BstFNI CGCG 1 cut(s) 191
BstMAI GTCTC 1 cut(s) 135
BstMCI CGRYCG 1 cut(s) 189
BstMWI GCNNNNNNNGC 1 cut(s) 167
BstNI CCWGG 1 cut(s) 143
BstNSI RCATGY 1 cut(s) 80
BstSCI CCNGG 2 cut(s) 123, 141
BstUI CGCG 1 cut(s) 191
BtsIMutI CAGTG 3 cut(s) 41, 61, 108
BveI ACCTGC 1 cut(s) 166
CseI GACGC 1 cut(s) 117
CviAII CATG 1 cut(s) 77
CviJI RGCY 3 cut(s) 136, 170, 194
CviKI_1 RGCY 3 cut(s) 136, 170, 194
DdeI CTNAG 1 cut(s) 132
DraIII CACNNNGTG 1 cut(s) 58
EcoRII CCWGG 1 cut(s) 141
Esp3I CGTCTC 1 cut(s) 135
FaeI CATG 1 cut(s) 80
FaiI YATR 2 cut(s) 78, 95
FatI CATG 1 cut(s) 76
Fnu4HI GCNGC 1 cut(s) 192
Fsp4HI GCNGC 1 cut(s) 192
FspBI CTAG 1 cut(s) 171
GluI GCNGC 1 cut(s) 192
HapII CCGG 1 cut(s) 125
HgaI GACGC 1 cut(s) 117
Hin1I GRCGYC 1 cut(s) 128
Hin1II CATG 1 cut(s) 80
HinfI GANTC 2 cut(s) 104, 146
HpaII CCGG 1 cut(s) 125
HphI GGTGA 3 cut(s) 28, 112, 147
Hpy166II GTNNAC 1 cut(s) 115
Hpy188I TCNGA 1 cut(s) 86
Hpy8I GTNNAC 1 cut(s) 115
HpyCH4III ACNGT 3 cut(s) 45, 56, 112
HpyCH4V TGCA 1 cut(s) 52
HpyF10VI GCNNNNNNNGC 1 cut(s) 167
HpyF3I CTNAG 1 cut(s) 132
Hsp92I GRCGYC 1 cut(s) 128
Hsp92II CATG 1 cut(s) 80
LpnPI CCDG 5 cut(s) 48, 128, 138, 155, 171
MaeI CTAG 1 cut(s) 171
MboII GAAGA 2 cut(s) 141, 144
MluCI AATT 1 cut(s) 71
MmeI TCCRAC 1 cut(s) 64
MnlI CCTC 2 cut(s) 80, 147
MspI CCGG 1 cut(s) 125
MspR9I CCNGG 2 cut(s) 125, 143
MvaI CCWGG 1 cut(s) 143
MvnI CGCG 1 cut(s) 191
MwoI GCNNNNNNNGC 1 cut(s) 167
NciI CCSGG 1 cut(s) 125
NlaIII CATG 1 cut(s) 80
NspI RCATGY 1 cut(s) 80
PaqCI CACCTGC 1 cut(s) 166
PciI ACATGT 1 cut(s) 76
PfeI GAWTC 2 cut(s) 104, 146
PkrI GCNGC 1 cut(s) 193
PscI ACATGT 1 cut(s) 76
Psp6I CCWGG 1 cut(s) 141
PspGI CCWGG 1 cut(s) 141
SatI GCNGC 1 cut(s) 192
ScrFI CCNGG 2 cut(s) 125, 143
SetI ASST 3 cut(s) 15, 91, 160
Sse9I AATT 1 cut(s) 71
SsiI CCGC 1 cut(s) 191
SspMI CTAG 1 cut(s) 171
StyD4I CCNGG 2 cut(s) 123, 141
TaaI ACNGT 3 cut(s) 45, 56, 112
TaqII GACCGA 1 cut(s) 175
TasI AATT 1 cut(s) 71
TauI GCSGC 1 cut(s) 194
TfiI GAWTC 2 cut(s) 104, 146
TscAI CASTG 3 cut(s) 48, 61, 115
TspRI CASTG 3 cut(s) 48, 61, 115
XceI RCATGY 1 cut(s) 80
XspI CTAG 1 cut(s) 171
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.