Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0001350

Physical Location & Seq

Genomic Coordinates Reverse (-)

21512451 .. 21517229

Gene Structure 4779 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 858 bp

ATGAAGCTCACTGTAAAGACCCTCAAGGGCAGCCATTTCGAAATTAGGGTTCAGCCCACTGACGCCGTTATGGCTGTGAAGAAGAACATTGAGGATATACAAGGAAAAGATAATTACCCATGTGGACAGCAGTTACTGATTCACAATGGGAAGGTCTTGAAAGACGAAACTACATTGGCTGACAACAAGGTCACAGAAGACGGTTTTCTTGTTGTCATGCTTAGCAAGAATAAAACTTCAGGCTTAGCAGGGTCTTCTTCTTCTCAGCCTGCCTCTACAAATCCTCCTACAACTCCACCAACCACAAATTCTACAAACAGAACTGAAGCTCCCATACAAGAACCACCCTTGCAGAGTACCACATCTGCTCCAGACACTTCTAGTGCGCATAGTGATACCTATGGTCAAGCTGCTTCAACTTTAGTTGCTGGTACTAATCTTGAGCAGACTATTCAACAAATAATGGATATGGGTGGTGGCAACTGGGACAAAGAAACAGTTACACGTGCATTACGAGCAGCTTATAACAATCCGGAGCGAGCAGTGGACTACTTGTACTCTAGTATACCAGAAACAACAGAAGTTGCAGTTCCTGTAGGTAATTTCCCTGCAAGTCAGGCAACTGATGTTGCCCCCGTCTCTGGAGCGCCTAACTCTGCTCCTTTGAATATGTTTCCTCAGCTAAAACTGGAATCCTCCAGGAAACACTCTCTGGTGCTGGCGCTGGGGCCCTTGGATCCCTCGACTTCCTTAGGAATAATCGCCAGTTCCAAGCGCTGCGCTCAATGGTGCAATCAAACCCACAAATTTTGCAGCCCATGCTGCAGGAACTCGGAAAGCAAAACCCCCAGCTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0031593 GO:0032182 GO:0043130 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0044877 GO:0070628 GO:0140030

KEGG Pathways

Metabolic & Signaling

ko03420 ko04141 map03420 map04141

Pfam Domains

Protein Families

UBA XPC-binding ubiquitin

Protein Analysis

286

Amino Acids

30.44

Weight (kDa)

6.52

Isoelectric Point (pI)

42.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rad60-SLD	PF11976	1 - 74	3.2e-06	Ubiquitin-2 like Rad60 SUMO-like
ubiquitin	PF00240	3 - 76	1.5e-14	Ubiquitin family
UBA	PF00627	148 - 185	3.2e-11	UBA/TS-N domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001350)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16190 AT1G16190 AT1G79650 AT1G79650 AT1G79650 AT1G79650
fragaria_vesca	FvH4_6g28060
malus_domestica	MD09G1229800.v1.1 MD17G1228500.v1.1
prunus_persica	Prupe.3G105900_v2.0.a1
pyrus_communis	pycom09g14830 pycom17g23110
rosa_chinensis	RchiOBHm_Chr1g0327471 RchiOBHm_Chr2g0131831
rosa_laevigata	RLG00000019212 RLG00000021652 RLG00000030713
rosa_multiflora	Rmu_sc0002700.1_g000003 Rmu_sc0003731.1_g000013 Rmu_ssc0000213.1_g000013
rosa_roxburghii	Rroxscaffold_1G00054010 Rroxscaffold_2G00112590 Rroxscaffold_2G00127890 Rroxscaffold_4G00302760 Rroxscaffold_5G00338170 Rroxscaffold_5G00341450 Rroxscaffold_5G00371080 Rroxscaffold_6G00390940 Rroxscaffold_6G00420830 Rroxscaffold_7G00196290 Rroxscaffold_7G00209730
rosa_rugosa	Rorug02G0107700 Rorug02G0299900 Rorug02G0300000 Rorug02G0300100 Rorug02G0476100
rosa_samantha	Rh1AG084200 Rh1CG081900 Rh1CG257900 Rh1DG088500 Rh2AG352100 Rh2BG359300 Rh2CG337700 Rh2DG376600 Rh4BG187800 Rh5AG270100 Rh5CG354000 Rh5CG379700 Rh6AG057900 Rh7AG341300 Rh7CG359200
rosa_wichuraiana	Rw1G006620 Rw2G028620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	525
AasI	GACNNNNNNGTC	1 cut(s)	188
Acc16I	TGCGCA	1 cut(s)	387
AccI	GTMKAC	1 cut(s)	565
AccIII	TCCGGA	1 cut(s)	532
AclWI	GGATC	2 cut(s)	731, 744
AcsI	RAATTY	2 cut(s)	307, 806
AcuI	CTGAAG	2 cut(s)	222, 345
AcvI	CACGTG	1 cut(s)	506
AcyI	GRCGYC	1 cut(s)	63
AfaI	GTAC	3 cut(s)	358, 433, 557
AfeI	AGCGCT	1 cut(s)	776
AfiI	CCNNNNNNNGG	1 cut(s)	641
AflIII	ACRYGT	1 cut(s)	503
AgsI	TTSAA	4 cut(s)	160, 417, 455, 667
AjnI	CCWGG	1 cut(s)	698
AjuI	GAANNNNNNNTTGG	2 cut(s)	292, 324
AloI	GAACNNNNNNTCC	2 cut(s)	313, 345
AluBI	AGCT	6 cut(s)	7, 329, 410, 521, 682, 852
AluI	AGCT	6 cut(s)	7, 329, 410, 521, 682, 852
Alw26I	GTCTC	1 cut(s)	643
AlwI	GGATC	2 cut(s)	731, 744
AlwNI	CAGNNNCTG	2 cut(s)	136, 593
Aor13HI	TCCGGA	1 cut(s)	532
Aor51HI	AGCGCT	1 cut(s)	776
AoxI	GGCC	1 cut(s)	728
ApaI	GGGCCC	1 cut(s)	732
ApeKI	GCWGC	6 cut(s)	30, 410, 518, 777, 813, 822
ApoI	RAATTY	2 cut(s)	307, 806
AspLEI	GCGC	5 cut(s)	388, 649, 724, 777, 782
AspS9I	GGNCC	2 cut(s)	728, 729
AsuII	TTCGAA	1 cut(s)	39
AxyI	CCTNAGG	1 cut(s)	751
BaeGI	GKGCMC	1 cut(s)	732
BamHI	GGATCC	1 cut(s)	736
BanII	GRGCYC	1 cut(s)	732
BarI	GAAGNNNNNNTAC	2 cut(s)	318, 350
BbrPI	CACGTG	1 cut(s)	506
BbsI	GAAGAC	2 cut(s)	204, 246
BbvCI	CCTCAGC	1 cut(s)	678
BbvI	GCAGC	6 cut(s)	42, 397, 530, 764, 809, 825
BceAI	ACGGC	1 cut(s)	50
BcgI	CGANNNNNNTGC	2 cut(s)	19, 53
BciT130I	CCWGG	1 cut(s)	700
BcoDI	GTCTC	1 cut(s)	643
BfaI	CTAG	2 cut(s)	381, 561
BfmI	CTRYAG	2 cut(s)	594, 823
BfoI	RGCGCY	3 cut(s)	650, 725, 778
BglI	GCCNNNNNGGC	1 cut(s)	71
BisI	GCNGC	6 cut(s)	31, 411, 519, 778, 814, 823
BlpI	GCTNAGC	2 cut(s)	221, 244
BlsI	GCNGC	6 cut(s)	32, 412, 520, 779, 815, 824
Bme1390I	CCNGG	1 cut(s)	700
BmgT120I	GGNCC	2 cut(s)	728, 729
BmiI	GGNNCC	3 cut(s)	729, 730, 738
BmrFI	CCNGG	1 cut(s)	700
BmrI	ACTGGG	1 cut(s)	493
BmuI	ACTGGG	1 cut(s)	493
BpiI	GAAGAC	2 cut(s)	204, 246
BpmI	CTGGAG	3 cut(s)	354, 663, 682
Bpu10I	CCTNAGC	1 cut(s)	678
Bpu1102I	GCTNAGC	2 cut(s)	221, 244
Bpu14I	TTCGAA	1 cut(s)	39
BpuEI	CTTGAG	2 cut(s)	8, 461
BsaAI	YACGTR	1 cut(s)	506
BsaHI	GRCGYC	1 cut(s)	63
BsaJI	CCNNGG	1 cut(s)	732
BsaWI	WCCGGW	1 cut(s)	532
BsaXI	ACNNNNNCTCC	6 cut(s)	268, 298, 313, 343, 352, 382
Bsc4I	CCNNNNNNNGG	1 cut(s)	641
Bse1I	ACTGG	3 cut(s)	488, 693, 765
Bse21I	CCTNAGG	1 cut(s)	751
BseAI	TCCGGA	1 cut(s)	532
BseBI	CCWGG	1 cut(s)	700
BseDI	CCNNGG	1 cut(s)	732
BseLI	CCNNNNNNNGG	1 cut(s)	641
BseMII	CTCAG	2 cut(s)	278, 692
BseNI	ACTGG	3 cut(s)	488, 693, 765
BseSI	GKGCMC	1 cut(s)	732
BseXI	GCAGC	6 cut(s)	42, 397, 530, 764, 809, 825
BseYI	CCCAGC	2 cut(s)	724, 848
BshFI	GGCC	1 cut(s)	730
BsiSI	CCGG	1 cut(s)	533
BslFI	GGGAC	1 cut(s)	500
BslI	CCNNNNNNNGG	1 cut(s)	641
BsmAI	GTCTC	1 cut(s)	643
BsmBI	CGTCTC	1 cut(s)	643
BsmFI	GGGAC	1 cut(s)	500
BsnI	GGCC	1 cut(s)	730
Bsp119I	TTCGAA	1 cut(s)	39
Bsp120I	GGGCCC	1 cut(s)	728
Bsp1286I	GDGCHC	1 cut(s)	732
Bsp13I	TCCGGA	1 cut(s)	532
Bsp143I	GATC	1 cut(s)	736
Bsp1720I	GCTNAGC	2 cut(s)	221, 244
BspANI	GGCC	1 cut(s)	730
BspCNI	CTCAG	2 cut(s)	277, 691
BspEI	TCCGGA	1 cut(s)	532
BspLI	GGNNCC	3 cut(s)	729, 730, 738
BspMAI	CTGCAG	1 cut(s)	827
BspPI	GGATC	2 cut(s)	731, 744
BspT104I	TTCGAA	1 cut(s)	39
BsrI	ACTGG	3 cut(s)	488, 693, 765
BssECI	CCNNGG	1 cut(s)	732
BssMI	GATC	1 cut(s)	736
BssNAI	GTATAC	1 cut(s)	566
BssNI	GRCGYC	1 cut(s)	63
BssT1I	CCWWGG	1 cut(s)	732
Bst1107I	GTATAC	1 cut(s)	566
Bst2UI	CCWGG	1 cut(s)	700
Bst4CI	ACNGT	3 cut(s)	13, 203, 499
BstACI	GRCGYC	1 cut(s)	63
BstAPI	GCANNNNNTGC	1 cut(s)	819
BstBAI	YACGTR	1 cut(s)	506
BstBI	TTCGAA	1 cut(s)	39
BstC8I	GCNNGC	3 cut(s)	270, 540, 720
BstDEI	CTNAG	5 cut(s)	221, 244, 264, 678, 751
BstH2I	RGCGCY	3 cut(s)	650, 725, 778
BstHHI	GCGC	5 cut(s)	388, 649, 724, 777, 782
BstKTI	GATC	1 cut(s)	739
BstMAI	GTCTC	1 cut(s)	643
BstMBI	GATC	1 cut(s)	736
BstMWI	GCNNNNNNNGC	5 cut(s)	71, 515, 617, 819, 822
BstNI	CCWGG	1 cut(s)	700
BstSCI	CCNGG	1 cut(s)	698
BstSFI	CTRYAG	2 cut(s)	594, 823
BstSLI	GKGCMC	1 cut(s)	732
BstV1I	GCAGC	6 cut(s)	42, 397, 530, 764, 809, 825
BstV2I	GAAGAC	2 cut(s)	204, 246
BstX2I	RGATCY	1 cut(s)	736
BstYI	RGATCY	1 cut(s)	736
BstZ17I	GTATAC	1 cut(s)	566
Bsu36I	CCTNAGG	1 cut(s)	751
BsuRI	GGCC	1 cut(s)	730
BtsI	GCAGTG	1 cut(s)	549
BtsIMutI	CAGTG	3 cut(s)	9, 57, 549
Cac8I	GCNNGC	3 cut(s)	270, 540, 720
CaiI	CAGNNNCTG	2 cut(s)	136, 593
CfoI	GCGC	5 cut(s)	388, 649, 724, 777, 782
Cfr13I	GGNCC	2 cut(s)	728, 729
CseI	GACGC	1 cut(s)	71
Csp6I	GTAC	3 cut(s)	357, 432, 556
CspCI	CAANNNNNGTGG	2 cut(s)	791, 826
CviAII	CATG	3 cut(s)	120, 217, 819
CviQI	GTAC	3 cut(s)	357, 432, 556
DdeI	CTNAG	5 cut(s)	221, 244, 264, 678, 751
DpnI	GATC	1 cut(s)	738
DpnII	GATC	1 cut(s)	736
DrdI	GACNNNNNNGTC	1 cut(s)	188
DseDI	GACNNNNNNGTC	1 cut(s)	188
Eco130I	CCWWGG	1 cut(s)	732
Eco24I	GRGCYC	1 cut(s)	732
Eco47III	AGCGCT	1 cut(s)	776
Eco57I	CTGAAG	2 cut(s)	222, 345
Eco72I	CACGTG	1 cut(s)	506
Eco81I	CCTNAGG	1 cut(s)	751
EcoO109I	RGGNCCY	2 cut(s)	728, 729
EcoRII	CCWGG	1 cut(s)	698
EcoT14I	CCWWGG	1 cut(s)	732
EcoT38I	GRGCYC	1 cut(s)	732
ErhI	CCWWGG	1 cut(s)	732
Esp3I	CGTCTC	1 cut(s)	643
FaeI	CATG	3 cut(s)	123, 220, 822
FaqI	GGGAC	1 cut(s)	500
FatI	CATG	3 cut(s)	119, 216, 818
FblI	GTMKAC	1 cut(s)	565
Fnu4HI	GCNGC	6 cut(s)	31, 411, 519, 778, 814, 823
FriOI	GRGCYC	1 cut(s)	732
Fsp4HI	GCNGC	6 cut(s)	31, 411, 519, 778, 814, 823
FspAI	RTGCGCAY	1 cut(s)	387
FspBI	CTAG	2 cut(s)	381, 561
FspI	TGCGCA	1 cut(s)	387
GlaI	GCGC	5 cut(s)	387, 648, 723, 776, 781
GluI	GCNGC	6 cut(s)	31, 411, 519, 778, 814, 823
GsaI	CCCAGC	2 cut(s)	728, 852
GsuI	CTGGAG	3 cut(s)	354, 663, 682
HaeII	RGCGCY	3 cut(s)	650, 725, 778
HaeIII	GGCC	1 cut(s)	730
HapII	CCGG	1 cut(s)	533
HgaI	GACGC	1 cut(s)	71
HhaI	GCGC	5 cut(s)	388, 649, 724, 777, 782
Hin1I	GRCGYC	1 cut(s)	63
Hin1II	CATG	3 cut(s)	123, 220, 822
Hin6I	GCGC	5 cut(s)	386, 647, 722, 775, 780
HinP1I	GCGC	5 cut(s)	386, 647, 722, 775, 780
HinfI	GANTC	2 cut(s)	139, 692
HpaII	CCGG	1 cut(s)	533
Hpy166II	GTNNAC	3 cut(s)	125, 547, 566
Hpy188I	TCNGA	1 cut(s)	835
Hpy188III	TCNNGA	5 cut(s)	157, 371, 440, 533, 642
Hpy8I	GTNNAC	3 cut(s)	125, 547, 566
HpyAV	CCTTC	1 cut(s)	145
HpyCH4III	ACNGT	3 cut(s)	13, 203, 499
HpyCH4IV	ACGT	1 cut(s)	505
HpyCH4V	TGCA	7 cut(s)	352, 509, 587, 611, 792, 813, 825
HpyF10VI	GCNNNNNNNGC	5 cut(s)	71, 515, 617, 819, 822
HpyF3I	CTNAG	5 cut(s)	221, 244, 264, 678, 751
HpySE526I	ACGT	1 cut(s)	505
Hsp92I	GRCGYC	1 cut(s)	63
Hsp92II	CATG	3 cut(s)	123, 220, 822
HspAI	GCGC	5 cut(s)	386, 647, 722, 775, 780
Kpn2I	TCCGGA	1 cut(s)	532
Kzo9I	GATC	1 cut(s)	736
LmnI	GCTCC	5 cut(s)	334, 373, 535, 644, 664
Lsp1109I	GCAGC	6 cut(s)	42, 397, 530, 764, 809, 825
MaeI	CTAG	2 cut(s)	381, 561
MaeII	ACGT	1 cut(s)	505
MaeIII	GTNAC	3 cut(s)	132, 190, 499
MalI	GATC	1 cut(s)	738
MboI	GATC	1 cut(s)	736
MboII	GAAGA	6 cut(s)	91, 94, 209, 246, 249, 252
MflI	RGATCY	1 cut(s)	736
MhlI	GDGCHC	1 cut(s)	732
MluCI	AATT	5 cut(s)	42, 112, 307, 601, 806
MnlI	CCTC	7 cut(s)	32, 85, 283, 294, 687, 706, 751
MroI	TCCGGA	1 cut(s)	532
MseI	TTAA	1 cut(s)	856
MspI	CCGG	1 cut(s)	533
MspR9I	CCNGG	1 cut(s)	700
MteI	GCGCNGCGC	1 cut(s)	778
MvaI	CCWGG	1 cut(s)	700
MwoI	GCNNNNNNNGC	5 cut(s)	71, 515, 617, 819, 822
NdeII	GATC	1 cut(s)	736
NlaIII	CATG	3 cut(s)	123, 220, 822
NlaIV	GGNNCC	3 cut(s)	729, 730, 738
NmuCI	GTSAC	1 cut(s)	190
NsbI	TGCGCA	1 cut(s)	387
NspV	TTCGAA	1 cut(s)	39
PcsI	WCGNNNNNNNCGW	1 cut(s)	511
PfeI	GAWTC	2 cut(s)	139, 692
PfoI	TCCNGGA	1 cut(s)	698
PkrI	GCNGC	6 cut(s)	32, 412, 520, 779, 815, 824
PmaCI	CACGTG	1 cut(s)	506
PmlI	CACGTG	1 cut(s)	506
Ppu21I	YACGTR	1 cut(s)	506
PsiI	TTATAA	1 cut(s)	525
Psp6I	CCWGG	1 cut(s)	698
PspCI	CACGTG	1 cut(s)	506
PspFI	CCCAGC	2 cut(s)	724, 848
PspGI	CCWGG	1 cut(s)	698
PspN4I	GGNNCC	3 cut(s)	729, 730, 738
PspOMI	GGGCCC	1 cut(s)	728
PspPI	GGNCC	2 cut(s)	728, 729
PstI	CTGCAG	1 cut(s)	827
PstNI	CAGNNNCTG	2 cut(s)	136, 593
PsuI	RGATCY	1 cut(s)	736
RsaI	GTAC	3 cut(s)	358, 433, 557
RsaNI	GTAC	3 cut(s)	357, 432, 556
SaqAI	TTAA	1 cut(s)	856
SatI	GCNGC	6 cut(s)	31, 411, 519, 778, 814, 823
Sau3AI	GATC	1 cut(s)	736
Sau96I	GGNCC	2 cut(s)	728, 729
ScrFI	CCNGG	1 cut(s)	700
SduI	GDGCHC	1 cut(s)	732
SfcI	CTRYAG	2 cut(s)	594, 823
SfuI	TTCGAA	1 cut(s)	39
SmlI	CTYRAG	2 cut(s)	23, 440
SmoI	CTYRAG	2 cut(s)	23, 440
Sse9I	AATT	5 cut(s)	42, 112, 307, 601, 806
SspMI	CTAG	2 cut(s)	381, 561
StyD4I	CCNGG	1 cut(s)	698
StyI	CCWWGG	1 cut(s)	732
TaaI	ACNGT	3 cut(s)	13, 203, 499
TaiI	ACGT	1 cut(s)	508
TaqI	TCGA	2 cut(s)	39, 743
TasI	AATT	5 cut(s)	42, 112, 307, 601, 806
TatI	WGTACW	1 cut(s)	555
TfiI	GAWTC	2 cut(s)	139, 692
Tru1I	TTAA	1 cut(s)	856
Tru9I	TTAA	1 cut(s)	856
TscAI	CASTG	3 cut(s)	16, 64, 549
TseFI	GTSAC	1 cut(s)	190
TseI	GCWGC	6 cut(s)	30, 410, 518, 777, 813, 822
Tsp45I	GTSAC	1 cut(s)	190
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	3 cut(s)	16, 64, 549
XapI	RAATTY	2 cut(s)	307, 806
XmiI	GTMKAC	1 cut(s)	565
XspI	CTAG	2 cut(s)	381, 561

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.