RchiOBHm_Chr7g0200501

DNAJ heat shock N-terminal domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0002151
Physical Location & Seq
Forward (+)
18283701 .. 18284158
458 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 354 bp
ATGGTGAAGAGCACCGAGCGCGTCTGCTACTACGAGACCTTAGGCCTCGAACCCAACTGCTCAATGGATGATGTCAGACATGCCTACCATGAACTTTCCATAATATACCACCCGGACAAATACAAGTCCAGTTGCGGCATGACAGAAGACGAAGCCGCCGCCAAATTCCTAGAGATCAAAGACGCCTACAACATTCTCAAAGAACCCGATGAGCGGGCCTTCTACGACTCCTACCGCCAGACCTACGCTGTCCCAGAGGCTTTCAACCCCGACCTCAAAGCCGCTTTCGACGTACAACATCAACTTCAATGGCTACTCCGATTCCAACCGCGGTTTCTACAAGGTCTATTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ zf-C2H2_jaz

Protein Analysis

117

Amino Acids

13.81

Weight (kDa)

5.12

Isoelectric Point (pI)

49.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 10 - 76 1e-17 DnaJ domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 214
AccII CGCG 2 cut(s) 21, 331
AciI CCGC 8 cut(s) 135, 156, 159, 214, 235, 282, 329, 331
AcsI RAATTY 1 cut(s) 164
AcyI GRCGYC 1 cut(s) 183
AfaI GTAC 1 cut(s) 294
AfiI CCNNNNNNNGG 1 cut(s) 213
AgsI TTSAA 2 cut(s) 265, 308
AjuI GAANNNNNNNTTGG 2 cut(s) 318, 350
Alw21I GWGCWC 1 cut(s) 14
Alw26I GTCTC 1 cut(s) 29
AoxI GGCC 2 cut(s) 43, 216
ApoI RAATTY 1 cut(s) 164
AspLEI GCGC 1 cut(s) 21
AspS9I GGNCC 1 cut(s) 216
AsuC2I CCSGG 1 cut(s) 113
AsuHPI GGTGA 1 cut(s) 16
AxyI CCTNAGG 1 cut(s) 40
BbsI GAAGAC 1 cut(s) 153
Bbv12I GWGCWC 1 cut(s) 14
BcnI CCSGG 1 cut(s) 113
BcoDI GTCTC 1 cut(s) 29
BfaI CTAG 1 cut(s) 170
BisI GCNGC 4 cut(s) 136, 156, 159, 282
BlsI GCNGC 4 cut(s) 137, 157, 160, 283
Bme1390I CCNGG 1 cut(s) 113
BmgT120I GGNCC 1 cut(s) 216
BmrFI CCNGG 1 cut(s) 113
BpiI GAAGAC 1 cut(s) 153
BpuMI CCSGG 1 cut(s) 113
BsaHI GRCGYC 1 cut(s) 183
BsaI GGTCTC 1 cut(s) 29
BsaJI CCNNGG 1 cut(s) 329
Bsc4I CCNNNNNNNGG 1 cut(s) 213
Bse1I ACTGG 1 cut(s) 129
Bse21I CCTNAGG 1 cut(s) 40
BseDI CCNNGG 1 cut(s) 329
BseGI GGATG 1 cut(s) 73
BseLI CCNNNNNNNGG 1 cut(s) 213
BseNI ACTGG 1 cut(s) 129
Bsh1236I CGCG 2 cut(s) 21, 331
BshFI GGCC 2 cut(s) 45, 218
BsiHKAI GWGCWC 1 cut(s) 14
BsiSI CCGG 1 cut(s) 113
BslFI GGGAC 1 cut(s) 236
BslI CCNNNNNNNGG 1 cut(s) 213
BsmAI GTCTC 1 cut(s) 29
BsmFI GGGAC 1 cut(s) 236
BsnI GGCC 2 cut(s) 45, 218
Bso31I GGTCTC 1 cut(s) 29
Bsp1286I GDGCHC 1 cut(s) 14
Bsp143I GATC 1 cut(s) 174
BspACI CCGC 8 cut(s) 135, 156, 159, 214, 235, 282, 329, 331
BspANI GGCC 2 cut(s) 45, 218
BspFNI CGCG 2 cut(s) 21, 331
BspQI GCTCTTC 1 cut(s) 2
BspTNI GGTCTC 1 cut(s) 29
BsrBI CCGCTC 1 cut(s) 214
BsrI ACTGG 1 cut(s) 129
BssECI CCNNGG 1 cut(s) 329
BssMI GATC 1 cut(s) 174
BssNI GRCGYC 1 cut(s) 183
Bst6I CTCTTC 1 cut(s) 2
BstACI GRCGYC 1 cut(s) 183
BstC8I GCNNGC 1 cut(s) 216
BstDEI CTNAG 1 cut(s) 40
BstDSI CCRYGG 1 cut(s) 329
BstF5I GGATG 1 cut(s) 73
BstFNI CGCG 2 cut(s) 21, 331
BstHHI GCGC 1 cut(s) 21
BstKTI GATC 1 cut(s) 177
BstMAI GTCTC 1 cut(s) 29
BstMBI GATC 1 cut(s) 174
BstMWI GCNNNNNNNGC 1 cut(s) 18
BstNSI RCATGY 1 cut(s) 83
BstSCI CCNGG 1 cut(s) 111
BstUI CGCG 2 cut(s) 21, 331
BstV2I GAAGAC 1 cut(s) 153
Bsu36I CCTNAGG 1 cut(s) 40
BsuRI GGCC 2 cut(s) 45, 218
BtgI CCRYGG 1 cut(s) 329
BtsCI GGATG 1 cut(s) 73
Cac8I GCNNGC 1 cut(s) 216
CfoI GCGC 1 cut(s) 21
Cfr13I GGNCC 1 cut(s) 216
Cfr42I CCGCGG 1 cut(s) 332
CseI GACGC 2 cut(s) 10, 191
Csp6I GTAC 1 cut(s) 293
CviAII CATG 3 cut(s) 80, 89, 139
CviJI RGCY 6 cut(s) 45, 155, 218, 260, 281, 313
CviKI_1 RGCY 6 cut(s) 45, 155, 218, 260, 281, 313
CviQI GTAC 1 cut(s) 293
DdeI CTNAG 1 cut(s) 40
DpnI GATC 1 cut(s) 176
DpnII GATC 1 cut(s) 174
Eam1104I CTCTTC 1 cut(s) 2
EarI CTCTTC 1 cut(s) 2
Eco147I AGGCCT 1 cut(s) 45
Eco31I GGTCTC 1 cut(s) 29
Eco81I CCTNAGG 1 cut(s) 40
FaeI CATG 3 cut(s) 83, 92, 142
FaiI YATR 5 cut(s) 81, 90, 101, 106, 140
FaqI GGGAC 1 cut(s) 236
FatI CATG 3 cut(s) 79, 88, 138
FauI CCCGC 1 cut(s) 207
Fnu4HI GCNGC 4 cut(s) 136, 156, 159, 282
FokI GGATG 1 cut(s) 80
Fsp4HI GCNGC 4 cut(s) 136, 156, 159, 282
FspBI CTAG 1 cut(s) 170
GlaI GCGC 1 cut(s) 20
GluI GCNGC 4 cut(s) 136, 156, 159, 282
HaeIII GGCC 2 cut(s) 45, 218
HapII CCGG 1 cut(s) 113
HgaI GACGC 2 cut(s) 10, 191
HhaI GCGC 1 cut(s) 21
Hin1I GRCGYC 1 cut(s) 183
Hin1II CATG 3 cut(s) 83, 92, 142
Hin6I GCGC 1 cut(s) 19
HinP1I GCGC 1 cut(s) 19
HinfI GANTC 2 cut(s) 227, 321
HpaII CCGG 1 cut(s) 113
HphI GGTGA 1 cut(s) 16
Hpy188I TCNGA 3 cut(s) 77, 320, 353
Hpy99I CGWCG 1 cut(s) 293
HpyAV CCTTC 1 cut(s) 229
HpyCH4IV ACGT 1 cut(s) 291
HpyF10VI GCNNNNNNNGC 1 cut(s) 18
HpyF3I CTNAG 1 cut(s) 40
HpySE526I ACGT 1 cut(s) 291
Hsp92I GRCGYC 1 cut(s) 183
Hsp92II CATG 3 cut(s) 83, 92, 142
HspAI GCGC 1 cut(s) 19
KspI CCGCGG 1 cut(s) 332
Kzo9I GATC 1 cut(s) 174
LguI GCTCTTC 1 cut(s) 2
LpnPI CCDG 4 cut(s) 126, 142, 251, 267
MaeI CTAG 1 cut(s) 170
MaeII ACGT 1 cut(s) 291
MalI GATC 1 cut(s) 176
MbiI CCGCTC 1 cut(s) 214
MboI GATC 1 cut(s) 174
MboII GAAGA 2 cut(s) 19, 158
MhlI GDGCHC 1 cut(s) 14
MluCI AATT 1 cut(s) 164
MlyI GAGTC 1 cut(s) 221
MmeI TCCRAC 1 cut(s) 349
MnlI CCTC 3 cut(s) 56, 250, 284
MspA1I CMGCKG 1 cut(s) 331
MspI CCGG 1 cut(s) 113
MspR9I CCNGG 1 cut(s) 113
MvnI CGCG 2 cut(s) 21, 331
MwoI GCNNNNNNNGC 1 cut(s) 18
NciI CCSGG 1 cut(s) 113
NdeII GATC 1 cut(s) 174
NlaIII CATG 3 cut(s) 83, 92, 142
NspI RCATGY 1 cut(s) 83
PceI AGGCCT 1 cut(s) 45
PciSI GCTCTTC 1 cut(s) 2
PfeI GAWTC 1 cut(s) 321
PkrI GCNGC 4 cut(s) 137, 157, 160, 283
PleI GAGTC 1 cut(s) 221
PpsI GAGTC 1 cut(s) 221
PspPI GGNCC 1 cut(s) 216
RsaI GTAC 1 cut(s) 294
RsaNI GTAC 1 cut(s) 293
SacII CCGCGG 1 cut(s) 332
SapI GCTCTTC 1 cut(s) 2
SatI GCNGC 4 cut(s) 136, 156, 159, 282
Sau3AI GATC 1 cut(s) 174
Sau96I GGNCC 1 cut(s) 216
SchI GAGTC 1 cut(s) 221
ScrFI CCNGG 1 cut(s) 113
SduI GDGCHC 1 cut(s) 14
SetI ASST 5 cut(s) 41, 245, 276, 294, 346
Sfr303I CCGCGG 1 cut(s) 332
SgrBI CCGCGG 1 cut(s) 332
Sse9I AATT 1 cut(s) 164
SseBI AGGCCT 1 cut(s) 45
SsiI CCGC 8 cut(s) 135, 156, 159, 214, 235, 282, 329, 331
SspMI CTAG 1 cut(s) 170
StuI AGGCCT 1 cut(s) 45
StyD4I CCNGG 1 cut(s) 111
TaiI ACGT 1 cut(s) 294
TaqI TCGA 2 cut(s) 48, 288
TasI AATT 1 cut(s) 164
TauI GCSGC 4 cut(s) 138, 158, 161, 284
TfiI GAWTC 1 cut(s) 321
TspDTI ATGAA 1 cut(s) 105
XapI RAATTY 1 cut(s) 164
XceI RCATGY 1 cut(s) 83
XcmI CCANNNNNNNNNTGG 1 cut(s) 61
XspI CTAG 1 cut(s) 170
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.