RchiOBHm_Chr4g0408951

peroxisome organization

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0001014
Physical Location & Seq
Reverse (-)
31903150 .. 31906155
3006 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 900 bp
ATGTTGCCGGACGGCGACGTCTGCACCTACTGCGCCAGCGAGAATGGCGGCTCCAACGGTGATAACGCCGAAGGTCTGGTGTGCGCGCATTACAGGAAATCTGATCCCTCTCAGTCGTCGTTTTGCTATTCCTCTTCACTCAAATACGTTCCTGTGCCGTCGAGCGATTCAGAGAAGCTACAACGGGTCATGACTGCTTCGATTAAGGGTTTTACCATTGGCGCTGGCCTCAAAGGCGGCCTCGCAGTCTTCTCCATCCTAGCTAGACTCAGAAAGAGAAAGCTCTTAGCCTCTCTCAGGACTGAGGGTGCGATTACGAATAATGAAGCAATTGTTACTGTTTTGCAGGAGACCTTGAGATATGGTCTGTTTCTTGGGACTTTTGCAGGCACATTTGTTTCAGTGGATGAGATTATTGCTTCTTTAGGAGGCCACCGTAGGCATTTCAGGACAGCTAAGTGGAGGGCTTTGTTAGCAGGGCTTATAGCAGGACTGTCTATGCTTCTTACTGGGCATAACACGCAGCATACGAGCTTGGCCGTATACATACTTATGCGTGCTACCGTACCTCTCACTTGGAAGCACGATGACATTTTCCTTATGTGTCTCTCCTCTTCGCAAATTCTACGACGTCGGATTTCTCTCTCCCTCCCTCCATCCCTCCAGCAGGTTGCCCACGACGCCTGCTCTCGCCATCTCGGTGCCGAAACTCGTCGTCGTGCTCTCCGCGGCCAGGCTCGACGCCAAGCCAACGGTCCTTGTCGCTTAGAAGCTTGGCGACGCCGGGCCCCTAAATTCTTTCTCAACAAACATGGGGGAAAGGATATCACAATTTTGCAAGGTGTTAAAGAGATTGCAAGTGGTTTACCGTTTACTAATTTGGAAGCAATAGAAAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TMEM135_C_rich

Protein Analysis

299

Amino Acids

32.79

Weight (kDa)

10.07

Isoelectric Point (pI)

56.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 17
AatII GACGTC 2 cut(s) 21, 634
Acc36I ACCTGC 1 cut(s) 658
AccB1I GGYRCC 1 cut(s) 701
AccI GTMKAC 1 cut(s) 543
AccII CGCG 2 cut(s) 86, 729
AciI CCGC 4 cut(s) 48, 237, 727, 729
AclWI GGATC 1 cut(s) 98
AcoI YGGCCR 2 cut(s) 537, 730
AcsI RAATTY 2 cut(s) 621, 794
AcyI GRCGYC 5 cut(s) 18, 631, 681, 742, 781
AfaI GTAC 1 cut(s) 567
AfiI CCNNNNNNNGG 3 cut(s) 297, 667, 733
AjnI CCWGG 1 cut(s) 732
AluBI AGCT 6 cut(s) 178, 263, 283, 455, 534, 773
AluI AGCT 6 cut(s) 178, 263, 283, 455, 534, 773
Alw21I GWGCWC 1 cut(s) 724
Alw26I GTCTC 2 cut(s) 344, 611
AlwI GGATC 1 cut(s) 98
AoxI GGCC 6 cut(s) 226, 238, 430, 537, 730, 786
ApaI GGGCCC 1 cut(s) 790
ApeKI GCWGC 1 cut(s) 523
ApoI RAATTY 2 cut(s) 621, 794
AspLEI GCGC 4 cut(s) 35, 86, 88, 224
AspS9I GGNCC 3 cut(s) 755, 786, 787
AsuC2I CCSGG 1 cut(s) 785
AsuHPI GGTGA 1 cut(s) 71
AvaII GGWCC 1 cut(s) 755
BaeGI GKGCMC 1 cut(s) 790
BanI GGYRCC 1 cut(s) 701
BanII GRGCYC 1 cut(s) 790
BbsI GAAGAC 1 cut(s) 241
Bbv12I GWGCWC 1 cut(s) 724
BbvI GCAGC 1 cut(s) 535
BccI CCATC 3 cut(s) 263, 664, 702
BceAI ACGGC 3 cut(s) 28, 142, 524
BciT130I CCWGG 1 cut(s) 734
BcnI CCSGG 1 cut(s) 785
BcoDI GTCTC 2 cut(s) 344, 611
BfaI CTAG 2 cut(s) 260, 264
BfoI RGCGCY 1 cut(s) 225
BfuAI ACCTGC 1 cut(s) 658
BglI GCCNNNNNGGC 1 cut(s) 234
BisI GCNGC 4 cut(s) 49, 238, 524, 730
BlsI GCNGC 4 cut(s) 50, 239, 525, 731
Bme1390I CCNGG 2 cut(s) 734, 785
Bme18I GGWCC 1 cut(s) 755
BmgT120I GGNCC 3 cut(s) 755, 786, 787
BmiI GGNNCC 4 cut(s) 52, 703, 788, 789
BmrFI CCNGG 2 cut(s) 734, 785
BmrI ACTGGG 1 cut(s) 519
BmuI ACTGGG 1 cut(s) 519
BpiI GAAGAC 1 cut(s) 241
BpmI CTGGAG 1 cut(s) 647
BpuEI CTTGAG 1 cut(s) 376
BpuMI CCSGG 1 cut(s) 785
BsaHI GRCGYC 5 cut(s) 18, 631, 681, 742, 781
BsaI GGTCTC 1 cut(s) 344
BsaJI CCNNGG 1 cut(s) 727
Bsc4I CCNNNNNNNGG 3 cut(s) 297, 667, 733
Bse1I ACTGG 1 cut(s) 514
BseBI CCWGG 1 cut(s) 734
BseDI CCNNGG 1 cut(s) 727
BseGI GGATG 3 cut(s) 255, 412, 656
BseLI CCNNNNNNNGG 3 cut(s) 297, 667, 733
BseMII CTCAG 4 cut(s) 125, 283, 294, 310
BseNI ACTGG 1 cut(s) 514
BsePI GCGCGC 1 cut(s) 84
BseRI GAGGAG 1 cut(s) 601
BseSI GKGCMC 1 cut(s) 790
BseXI GCAGC 1 cut(s) 535
BsgI GTGCAG 1 cut(s) 7
Bsh1236I CGCG 2 cut(s) 86, 729
BshFI GGCC 6 cut(s) 228, 240, 432, 539, 732, 788
BshNI GGYRCC 1 cut(s) 701
BsiHKAI GWGCWC 1 cut(s) 724
BsiSI CCGG 2 cut(s) 8, 784
BslFI GGGAC 1 cut(s) 391
BslI CCNNNNNNNGG 3 cut(s) 297, 667, 733
BsmAI GTCTC 2 cut(s) 344, 611
BsmFI GGGAC 1 cut(s) 391
BsnI GGCC 6 cut(s) 228, 240, 432, 539, 732, 788
Bso31I GGTCTC 1 cut(s) 344
Bsp120I GGGCCC 1 cut(s) 786
Bsp1286I GDGCHC 2 cut(s) 724, 790
Bsp143I GATC 1 cut(s) 103
BspACI CCGC 4 cut(s) 48, 237, 727, 729
BspANI GGCC 6 cut(s) 228, 240, 432, 539, 732, 788
BspCNI CTCAG 4 cut(s) 124, 282, 295, 309
BspFNI CGCG 2 cut(s) 86, 729
BspHI TCATGA 1 cut(s) 189
BspLI GGNNCC 4 cut(s) 52, 703, 788, 789
BspMI ACCTGC 1 cut(s) 658
BspPI GGATC 1 cut(s) 98
BspT107I GGYRCC 1 cut(s) 701
BspTNI GGTCTC 1 cut(s) 344
BsrI ACTGG 1 cut(s) 514
BssECI CCNNGG 1 cut(s) 727
BssHII GCGCGC 1 cut(s) 84
BssMI GATC 1 cut(s) 103
BssNAI GTATAC 1 cut(s) 544
BssNI GRCGYC 5 cut(s) 18, 631, 681, 742, 781
Bst1107I GTATAC 1 cut(s) 544
Bst2UI CCWGG 1 cut(s) 734
Bst4CI ACNGT 7 cut(s) 59, 340, 437, 495, 565, 755, 870
Bst6I CTCTTC 2 cut(s) 139, 619
BstACI GRCGYC 5 cut(s) 18, 631, 681, 742, 781
BstAPI GCANNNNNTGC 1 cut(s) 30
BstC8I GCNNGC 6 cut(s) 37, 86, 226, 388, 558, 685
BstDEI CTNAG 7 cut(s) 111, 269, 286, 296, 303, 456, 766
BstDSI CCRYGG 1 cut(s) 727
BstENI CCTNNNNNAGG 2 cut(s) 295, 665
BstF5I GGATG 3 cut(s) 255, 412, 656
BstFNI CGCG 2 cut(s) 86, 729
BstH2I RGCGCY 1 cut(s) 225
BstHHI GCGC 4 cut(s) 35, 86, 88, 224
BstKTI GATC 1 cut(s) 106
BstMAI GTCTC 2 cut(s) 344, 611
BstMBI GATC 1 cut(s) 103
BstMWI GCNNNNNNNGC 7 cut(s) 21, 30, 45, 234, 473, 520, 680
BstNI CCWGG 1 cut(s) 734
BstSCI CCNGG 2 cut(s) 732, 783
BstSLI GKGCMC 1 cut(s) 790
BstUI CGCG 2 cut(s) 86, 729
BstV1I GCAGC 1 cut(s) 535
BstV2I GAAGAC 1 cut(s) 241
BstZ17I GTATAC 1 cut(s) 544
BsuRI GGCC 6 cut(s) 228, 240, 432, 539, 732, 788
BtgI CCRYGG 1 cut(s) 727
BtsCI GGATG 3 cut(s) 255, 412, 656
BtsIMutI CAGTG 1 cut(s) 408
BveI ACCTGC 1 cut(s) 658
Cac8I GCNNGC 6 cut(s) 37, 86, 226, 388, 558, 685
CciI TCATGA 1 cut(s) 189
CfoI GCGC 4 cut(s) 35, 86, 88, 224
Cfr13I GGNCC 3 cut(s) 755, 786, 787
Cfr42I CCGCGG 1 cut(s) 730
CseI GACGC 3 cut(s) 689, 750, 789
Csp6I GTAC 1 cut(s) 566
CviAII CATG 2 cut(s) 190, 812
CviQI GTAC 1 cut(s) 566
DdeI CTNAG 7 cut(s) 111, 269, 286, 296, 303, 456, 766
DpnI GATC 1 cut(s) 105
DpnII GATC 1 cut(s) 103
DrdI GACNNNNNNGTC 1 cut(s) 17
DseDI GACNNNNNNGTC 1 cut(s) 17
EaeI YGGCCR 2 cut(s) 537, 730
Eam1104I CTCTTC 2 cut(s) 139, 619
EarI CTCTTC 2 cut(s) 139, 619
Eco24I GRGCYC 1 cut(s) 790
Eco31I GGTCTC 1 cut(s) 344
Eco32I GATATC 1 cut(s) 826
Eco47I GGWCC 1 cut(s) 755
EcoNI CCTNNNNNAGG 2 cut(s) 295, 665
EcoO109I RGGNCCY 1 cut(s) 787
EcoRII CCWGG 1 cut(s) 732
EcoRV GATATC 1 cut(s) 826
EcoT38I GRGCYC 1 cut(s) 790
FaeI CATG 2 cut(s) 193, 815
FaqI GGGAC 1 cut(s) 391
FatI CATG 2 cut(s) 189, 811
FblI GTMKAC 1 cut(s) 543
Fnu4HI GCNGC 4 cut(s) 49, 238, 524, 730
FokI GGATG 3 cut(s) 242, 419, 643
FriOI GRGCYC 1 cut(s) 790
Fsp4HI GCNGC 4 cut(s) 49, 238, 524, 730
FspBI CTAG 2 cut(s) 260, 264
GlaI GCGC 4 cut(s) 34, 85, 87, 223
GluI GCNGC 4 cut(s) 49, 238, 524, 730
GsuI CTGGAG 1 cut(s) 647
HaeII RGCGCY 1 cut(s) 225
HaeIII GGCC 6 cut(s) 228, 240, 432, 539, 732, 788
HapII CCGG 2 cut(s) 8, 784
HgaI GACGC 3 cut(s) 689, 750, 789
HhaI GCGC 4 cut(s) 35, 86, 88, 224
Hin1I GRCGYC 5 cut(s) 18, 631, 681, 742, 781
Hin1II CATG 2 cut(s) 193, 815
Hin6I GCGC 4 cut(s) 33, 84, 86, 222
HinP1I GCGC 4 cut(s) 33, 84, 86, 222
HindIII AAGCTT 1 cut(s) 771
HinfI GANTC 2 cut(s) 167, 267
HpaII CCGG 2 cut(s) 8, 784
HphI GGTGA 1 cut(s) 71
Hpy166II GTNNAC 3 cut(s) 544, 866, 873
Hpy188I TCNGA 4 cut(s) 103, 172, 272, 636
Hpy188III TCNNGA 3 cut(s) 190, 298, 448
Hpy8I GTNNAC 3 cut(s) 544, 866, 873
HpyAV CCTTC 1 cut(s) 65
HpyCH4III ACNGT 7 cut(s) 59, 340, 437, 495, 565, 755, 870
HpyCH4IV ACGT 3 cut(s) 18, 147, 631
HpyCH4V TGCA 5 cut(s) 24, 346, 386, 838, 857
HpyF10VI GCNNNNNNNGC 7 cut(s) 21, 30, 45, 234, 473, 520, 680
HpyF3I CTNAG 7 cut(s) 111, 269, 286, 296, 303, 456, 766
HpySE526I ACGT 3 cut(s) 18, 147, 631
Hsp92I GRCGYC 5 cut(s) 18, 631, 681, 742, 781
Hsp92II CATG 2 cut(s) 193, 815
HspAI GCGC 4 cut(s) 33, 84, 86, 222
KspI CCGCGG 1 cut(s) 730
Kzo9I GATC 1 cut(s) 103
LmnI GCTCC 1 cut(s) 56
Lsp1109I GCAGC 1 cut(s) 535
MaeI CTAG 2 cut(s) 260, 264
MaeII ACGT 3 cut(s) 18, 147, 631
MaeIII GTNAC 1 cut(s) 334
MalI GATC 1 cut(s) 105
MboI GATC 1 cut(s) 103
MboII GAAGA 3 cut(s) 126, 241, 606
MfeI CAATTG 1 cut(s) 330
MhlI GDGCHC 2 cut(s) 724, 790
MluCI AATT 5 cut(s) 330, 621, 794, 831, 877
MlyI GAGTC 1 cut(s) 261
MmeI TCCRAC 2 cut(s) 78, 614
MseI TTAA 2 cut(s) 204, 846
MslI CAYNNNNRTG 2 cut(s) 551, 699
MspA1I CMGCKG 1 cut(s) 729
MspI CCGG 2 cut(s) 8, 784
MspR9I CCNGG 2 cut(s) 734, 785
MunI CAATTG 1 cut(s) 330
MvaI CCWGG 1 cut(s) 734
MvnI CGCG 2 cut(s) 86, 729
MwoI GCNNNNNNNGC 7 cut(s) 21, 30, 45, 234, 473, 520, 680
NciI CCSGG 1 cut(s) 785
NdeII GATC 1 cut(s) 103
NlaIII CATG 2 cut(s) 193, 815
NlaIV GGNNCC 4 cut(s) 52, 703, 788, 789
PagI TCATGA 1 cut(s) 189
PauI GCGCGC 1 cut(s) 84
PcsI WCGNNNNNNNCGW 1 cut(s) 527
PfeI GAWTC 1 cut(s) 167
PkrI GCNGC 4 cut(s) 50, 239, 525, 731
PleI GAGTC 1 cut(s) 261
PpsI GAGTC 1 cut(s) 261
Psp6I CCWGG 1 cut(s) 732
PspGI CCWGG 1 cut(s) 732
PspN4I GGNNCC 4 cut(s) 52, 703, 788, 789
PspOMI GGGCCC 1 cut(s) 786
PspPI GGNCC 3 cut(s) 755, 786, 787
PteI GCGCGC 1 cut(s) 84
RsaI GTAC 1 cut(s) 567
RsaNI GTAC 1 cut(s) 566
RseI CAYNNNNRTG 2 cut(s) 551, 699
SacII CCGCGG 1 cut(s) 730
SaqAI TTAA 2 cut(s) 204, 846
SatI GCNGC 4 cut(s) 49, 238, 524, 730
Sau3AI GATC 1 cut(s) 103
Sau96I GGNCC 3 cut(s) 755, 786, 787
SchI GAGTC 1 cut(s) 261
ScrFI CCNGG 2 cut(s) 734, 785
SduI GDGCHC 2 cut(s) 724, 790
Sfr303I CCGCGG 1 cut(s) 730
SgrBI CCGCGG 1 cut(s) 730
SinI GGWCC 1 cut(s) 755
SmiMI CAYNNNNRTG 2 cut(s) 551, 699
SmlI CTYRAG 1 cut(s) 355
SmoI CTYRAG 1 cut(s) 355
Sse9I AATT 5 cut(s) 330, 621, 794, 831, 877
SsiI CCGC 4 cut(s) 48, 237, 727, 729
SspMI CTAG 2 cut(s) 260, 264
StyD4I CCNGG 2 cut(s) 732, 783
TaaI ACNGT 7 cut(s) 59, 340, 437, 495, 565, 755, 870
TaiI ACGT 3 cut(s) 21, 150, 634
TaqI TCGA 3 cut(s) 161, 200, 739
TasI AATT 5 cut(s) 330, 621, 794, 831, 877
TauI GCSGC 3 cut(s) 51, 240, 732
TfiI GAWTC 1 cut(s) 167
Tru1I TTAA 2 cut(s) 204, 846
Tru9I TTAA 2 cut(s) 204, 846
TscAI CASTG 1 cut(s) 408
TseI GCWGC 1 cut(s) 523
TspDTI ATGAA 1 cut(s) 339
TspRI CASTG 1 cut(s) 408
VpaK11BI GGWCC 1 cut(s) 755
XagI CCTNNNNNAGG 2 cut(s) 295, 665
XapI RAATTY 2 cut(s) 621, 794
XmiI GTMKAC 1 cut(s) 543
XspI CTAG 2 cut(s) 260, 264
ZraI GACGTC 2 cut(s) 19, 632
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.