Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0001014

Physical Location & Seq

Genomic Coordinates Reverse (-)

17810518 .. 17815311

Gene Structure 4794 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG112900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

ATGTCGCCGGACTGCGACGTCTGCACCTGTTGCGCCTGCCAAAATGGCGGCTCCAACTGTGATCACGCCGAAGATCTGGTGTGCGCGCATTACTGGAAATCCGATCCCTCTCCGTCGTCGTTTTGCTATTCCTCTTCGGATAAATACGTTCCTGTGCCGTCGAGCGATTCCGAGAAGCTACGGCGGGTCGTGACTGCTTCGATTAAGGGTTTCACCATCGGCGCCGGCCTCAAAGGCGGCCTCGCCGTCTTCTCCATCCTAGCTAGACTCAGAAAGAGAAAGCTCTTAGCCTCTCTCAGGACAGCTAAGTGGAGGGCTTTGTTAGCAGGGCTTATAGCAGGACCGTCTATGCTTCTTACTGGGCATAACACGCAGCATGCGAGCTTGGCTGTATACATACTTATGAGTGCTGCCGTGTTGGCCACGTGTTGTGGGATTAAAAGCAAACGGTTTGGTCGTGTTTGTAGACCTCTCACTTGGAAGCACGGTGACATTTTCCTTATGTGTCTCTCCTCTTCGCAAATTCTGTATATTTTTGCTGAGCATGTTCCTGTAAAATATGGAGGTTTGAGTGTGGATTACTGTGAGTGCAACCCAGAATTCACCATTGCTGATCCAGTCACTAAAGTAACCATCAAACTTGGGACAAAGAAGACTCAGGAAATTATAATTTATGAGTCCACGACTTGGGACCTGTTTGGCAATACTTTCAGGCTTTTAGTGATGGTAAAAAAAGCTTTCAAATACTCTTCAGAGCTTTTTGGAGTGGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TMEM135_C_rich

Protein Analysis

257

Amino Acids

28.13

Weight (kDa)

9.03

Isoelectric Point (pI)

43.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001014)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G34630 AT1G34630 AT1G34630 AT1G34630 AT1G34630
fragaria_vesca	FvH4_5g37331 FvH4_5g37331
malus_domestica	MD08G1182800.v1.1
prunus_persica	Prupe.1G517000_v2.0.a1 Prupe.1G517000_v2.0.a1
pyrus_communis	pycom08g15660
rosa_chinensis	RchiOBHm_Chr3g0470741 RchiOBHm_Chr4g0408951 RchiOBHm_Chr7g0238981
rosa_laevigata	RLG00000000793 RLG00000007867 RLG00000014356 RLG00000015234 RLG00000016579 RLG00000020758
rosa_multiflora	Rmu_co8298683.1_g000001 Rmu_sc0002152.1_g000014 Rmu_sc0004132.1_g000004 Rmu_sc0004879.1_g000005 Rmu_sc0005866.1_g000014 Rmu_sc0010178.1_g000001 Rmu_sc0029797.1_g000001 Rmu_sc0032697.1_g000001 Rmu_sc0034117.1_g000001 Rmu_ssc0000233.1_g000066
rosa_roxburghii	Rroxscaffold_3G00221410 Rroxscaffold_3G00221420
rosa_rugosa	Rorug03G0157600 Rorug05G0148200 Rorug05G0232900 Rorug05G0238700 Rorug07G0324200.1
rosa_samantha	Rh1BG208000 Rh1DG234700 Rh2AG003700 Rh2AG216800 Rh2DG222500 Rh3AG161900 Rh3AG329400 Rh3BG186700 Rh3CG176900 Rh3DG308000 Rh4AG125400 Rh4AG152700 Rh4BG154900 Rh4CG133600 Rh4DG112900 Rh5AG299600 Rh7AG465300 Rh7AG479200 Rh7BG451800 Rh7CG251000 Rh7CG496300 Rh7DG343400 Rh7DG463900
rosa_wichuraiana	Rw7G040000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	668
AasI	GACNNNNNNGTC	1 cut(s)	17
AatII	GACGTC	1 cut(s)	21
AccB1I	GGYRCC	1 cut(s)	221
AccB7I	CCANNNNNTGG	1 cut(s)	687
AccI	GTMKAC	2 cut(s)	393, 466
AccII	CGCG	1 cut(s)	86
AciI	CCGC	3 cut(s)	48, 184, 237
AclWI	GGATC	2 cut(s)	98, 608
AcoI	YGGCCR	1 cut(s)	420
AcsI	RAATTY	2 cut(s)	522, 599
AcuI	CTGAAG	1 cut(s)	735
AcvI	CACGTG	1 cut(s)	426
AcyI	GRCGYC	2 cut(s)	18, 222
AfiI	CCNNNNNNNGG	2 cut(s)	297, 687
AflIII	ACRYGT	1 cut(s)	425
AgsI	TTSAA	1 cut(s)	742
AluBI	AGCT	7 cut(s)	178, 263, 283, 305, 384, 737, 757
AluI	AGCT	7 cut(s)	178, 263, 283, 305, 384, 737, 757
Alw26I	GTCTC	1 cut(s)	512
AlwI	GGATC	2 cut(s)	98, 608
AoxI	GGCC	3 cut(s)	226, 238, 420
ApeKI	GCWGC	2 cut(s)	373, 410
ApoI	RAATTY	2 cut(s)	522, 599
AspLEI	GCGC	4 cut(s)	35, 86, 88, 224
AspS9I	GGNCC	2 cut(s)	341, 691
AsuHPI	GGTGA	3 cut(s)	205, 500, 595
AvaII	GGWCC	2 cut(s)	341, 691
BalI	TGGCCA	1 cut(s)	422
BanI	GGYRCC	1 cut(s)	221
BbrPI	CACGTG	1 cut(s)	426
BbsI	GAAGAC	2 cut(s)	241, 659
BbvI	GCAGC	2 cut(s)	385, 397
BccI	CCATC	4 cut(s)	224, 263, 641, 718
BceAI	ACGGC	4 cut(s)	142, 197, 230, 398
BclI	TGATCA	1 cut(s)	61
BcoDI	GTCTC	1 cut(s)	512
BfaI	CTAG	2 cut(s)	260, 264
BfoI	RGCGCY	1 cut(s)	225
BglI	GCCNNNNNGGC	3 cut(s)	45, 234, 419
BglII	AGATCT	1 cut(s)	73
BisI	GCNGC	4 cut(s)	49, 238, 374, 411
BlpI	GCTNAGC	1 cut(s)	540
BlsI	GCNGC	4 cut(s)	50, 239, 375, 412
Bme18I	GGWCC	2 cut(s)	341, 691
BmgT120I	GGNCC	2 cut(s)	341, 691
BmiI	GGNNCC	3 cut(s)	52, 223, 692
BmrI	ACTGGG	1 cut(s)	369
BmuI	ACTGGG	1 cut(s)	369
BpiI	GAAGAC	2 cut(s)	241, 659
Bpu1102I	GCTNAGC	1 cut(s)	540
BsaAI	YACGTR	1 cut(s)	426
BsaHI	GRCGYC	2 cut(s)	18, 222
Bsc4I	CCNNNNNNNGG	2 cut(s)	297, 687
Bse118I	RCCGGY	1 cut(s)	224
Bse1I	ACTGG	3 cut(s)	98, 364, 617
Bse3DI	GCAATG	1 cut(s)	606
BseGI	GGATG	1 cut(s)	255
BseLI	CCNNNNNNNGG	2 cut(s)	297, 687
BseMI	GCAATG	1 cut(s)	606
BseMII	CTCAG	4 cut(s)	283, 310, 531, 671
BseNI	ACTGG	3 cut(s)	98, 364, 617
BsePI	GCGCGC	1 cut(s)	84
BseRI	GAGGAG	1 cut(s)	502
BseXI	GCAGC	2 cut(s)	385, 397
BsgI	GTGCAG	1 cut(s)	7
Bsh1236I	CGCG	1 cut(s)	86
BshFI	GGCC	3 cut(s)	228, 240, 422
BshNI	GGYRCC	1 cut(s)	221
BsiSI	CCGG	2 cut(s)	8, 225
BslFI	GGGAC	2 cut(s)	658, 704
BslI	CCNNNNNNNGG	2 cut(s)	297, 687
BsmAI	GTCTC	1 cut(s)	512
BsmFI	GGGAC	2 cut(s)	658, 704
BsnI	GGCC	3 cut(s)	228, 240, 422
Bsp143I	GATC	4 cut(s)	61, 73, 103, 613
Bsp1720I	GCTNAGC	1 cut(s)	540
BspACI	CCGC	3 cut(s)	48, 184, 237
BspANI	GGCC	3 cut(s)	228, 240, 422
BspCNI	CTCAG	4 cut(s)	282, 309, 532, 670
BspFNI	CGCG	1 cut(s)	86
BspLI	GGNNCC	3 cut(s)	52, 223, 692
BspPI	GGATC	2 cut(s)	98, 608
BspT107I	GGYRCC	1 cut(s)	221
BsrDI	GCAATG	1 cut(s)	606
BsrFI	RCCGGY	1 cut(s)	224
BsrI	ACTGG	3 cut(s)	98, 364, 617
BssAI	RCCGGY	1 cut(s)	224
BssHII	GCGCGC	1 cut(s)	84
BssMI	GATC	4 cut(s)	61, 73, 103, 613
BssNAI	GTATAC	1 cut(s)	394
BssNI	GRCGYC	2 cut(s)	18, 222
Bst1107I	GTATAC	1 cut(s)	394
Bst4CI	ACNGT	5 cut(s)	59, 345, 450, 488, 584
Bst6I	CTCTTC	3 cut(s)	139, 520, 754
BstACI	GRCGYC	2 cut(s)	18, 222
BstAPI	GCANNNNNTGC	1 cut(s)	30
BstBAI	YACGTR	1 cut(s)	426
BstC8I	GCNNGC	5 cut(s)	37, 86, 226, 378, 382
BstDEI	CTNAG	6 cut(s)	269, 286, 296, 306, 540, 657
BstENI	CCTNNNNNAGG	1 cut(s)	295
BstF5I	GGATG	1 cut(s)	255
BstFNI	CGCG	1 cut(s)	86
BstH2I	RGCGCY	1 cut(s)	225
BstHHI	GCGC	4 cut(s)	35, 86, 88, 224
BstKTI	GATC	4 cut(s)	64, 76, 106, 616
BstMAI	GTCTC	1 cut(s)	512
BstMBI	GATC	4 cut(s)	61, 73, 103, 613
BstMWI	GCNNNNNNNGC	8 cut(s)	21, 30, 45, 234, 323, 370, 386, 419
BstNSI	RCATGY	2 cut(s)	380, 548
BstUI	CGCG	1 cut(s)	86
BstV1I	GCAGC	2 cut(s)	385, 397
BstV2I	GAAGAC	2 cut(s)	241, 659
BstX2I	RGATCY	1 cut(s)	73
BstYI	RGATCY	1 cut(s)	73
BstZ17I	GTATAC	1 cut(s)	394
BsuRI	GGCC	3 cut(s)	228, 240, 422
BtsCI	GGATG	1 cut(s)	255
Cac8I	GCNNGC	5 cut(s)	37, 86, 226, 378, 382
CfoI	GCGC	4 cut(s)	35, 86, 88, 224
Cfr10I	RCCGGY	1 cut(s)	224
Cfr13I	GGNCC	2 cut(s)	341, 691
CviAII	CATG	2 cut(s)	377, 545
DdeI	CTNAG	6 cut(s)	269, 286, 296, 306, 540, 657
DinI	GGCGCC	1 cut(s)	223
DpnI	GATC	4 cut(s)	63, 75, 105, 615
DpnII	GATC	4 cut(s)	61, 73, 103, 613
DrdI	GACNNNNNNGTC	1 cut(s)	17
DseDI	GACNNNNNNGTC	1 cut(s)	17
EaeI	YGGCCR	1 cut(s)	420
Eam1104I	CTCTTC	3 cut(s)	139, 520, 754
EarI	CTCTTC	3 cut(s)	139, 520, 754
Eco47I	GGWCC	2 cut(s)	341, 691
Eco57I	CTGAAG	1 cut(s)	735
Eco72I	CACGTG	1 cut(s)	426
EcoNI	CCTNNNNNAGG	1 cut(s)	295
EcoO109I	RGGNCCY	1 cut(s)	691
EcoRI	GAATTC	1 cut(s)	599
EgeI	GGCGCC	1 cut(s)	223
EheI	GGCGCC	1 cut(s)	223
FaeI	CATG	2 cut(s)	380, 548
FaqI	GGGAC	2 cut(s)	658, 704
FatI	CATG	2 cut(s)	376, 544
FauI	CCCGC	1 cut(s)	177
FbaI	TGATCA	1 cut(s)	61
FblI	GTMKAC	2 cut(s)	393, 466
Fnu4HI	GCNGC	4 cut(s)	49, 238, 374, 411
FokI	GGATG	1 cut(s)	242
Fsp4HI	GCNGC	4 cut(s)	49, 238, 374, 411
FspBI	CTAG	2 cut(s)	260, 264
GlaI	GCGC	4 cut(s)	34, 85, 87, 223
GluI	GCNGC	4 cut(s)	49, 238, 374, 411
HaeII	RGCGCY	1 cut(s)	225
HaeIII	GGCC	3 cut(s)	228, 240, 422
HapII	CCGG	2 cut(s)	8, 225
HhaI	GCGC	4 cut(s)	35, 86, 88, 224
Hin1I	GRCGYC	2 cut(s)	18, 222
Hin1II	CATG	2 cut(s)	380, 548
Hin6I	GCGC	4 cut(s)	33, 84, 86, 222
HinP1I	GCGC	4 cut(s)	33, 84, 86, 222
HindIII	AAGCTT	1 cut(s)	735
HinfI	GANTC	4 cut(s)	167, 267, 655, 677
HpaII	CCGG	2 cut(s)	8, 225
HphI	GGTGA	3 cut(s)	205, 500, 595
Hpy166II	GTNNAC	3 cut(s)	394, 467, 681
Hpy188I	TCNGA	5 cut(s)	103, 139, 172, 272, 754
Hpy188III	TCNNGA	3 cut(s)	190, 298, 659
Hpy8I	GTNNAC	3 cut(s)	394, 467, 681
Hpy99I	CGWCG	4 cut(s)	20, 118, 121, 163
HpyCH4III	ACNGT	5 cut(s)	59, 345, 450, 488, 584
HpyCH4IV	ACGT	3 cut(s)	18, 147, 425
HpyCH4V	TGCA	2 cut(s)	24, 591
HpyF10VI	GCNNNNNNNGC	8 cut(s)	21, 30, 45, 234, 323, 370, 386, 419
HpyF3I	CTNAG	6 cut(s)	269, 286, 296, 306, 540, 657
HpySE526I	ACGT	3 cut(s)	18, 147, 425
Hsp92I	GRCGYC	2 cut(s)	18, 222
Hsp92II	CATG	2 cut(s)	380, 548
HspAI	GCGC	4 cut(s)	33, 84, 86, 222
KasI	GGCGCC	1 cut(s)	221
KroI	GCCGGC	1 cut(s)	224
KroNI	GCCGGC	1 cut(s)	226
Ksp22I	TGATCA	1 cut(s)	61
Kzo9I	GATC	4 cut(s)	61, 73, 103, 613
LmnI	GCTCC	1 cut(s)	56
Lsp1109I	GCAGC	2 cut(s)	385, 397
MaeI	CTAG	2 cut(s)	260, 264
MaeII	ACGT	3 cut(s)	18, 147, 425
MaeIII	GTNAC	4 cut(s)	190, 488, 619, 628
MalI	GATC	4 cut(s)	63, 75, 105, 615
MboI	GATC	4 cut(s)	61, 73, 103, 613
MboII	GAAGA	6 cut(s)	83, 126, 241, 507, 664, 741
MflI	RGATCY	1 cut(s)	73
MlsI	TGGCCA	1 cut(s)	422
MluCI	AATT	4 cut(s)	522, 599, 663, 669
MluNI	TGGCCA	1 cut(s)	422
Mly113I	GGCGCC	1 cut(s)	222
MlyI	GAGTC	3 cut(s)	261, 649, 686
MmeI	TCCRAC	1 cut(s)	78
MnlI	CCTC	9 cut(s)	118, 142, 239, 251, 301, 306, 480, 523, 557
Mox20I	TGGCCA	1 cut(s)	422
MroNI	GCCGGC	1 cut(s)	224
MscI	TGGCCA	1 cut(s)	422
MseI	TTAA	2 cut(s)	204, 438
MslI	CAYNNNNRTG	1 cut(s)	401
Msp20I	TGGCCA	1 cut(s)	422
MspI	CCGG	2 cut(s)	8, 225
MvnI	CGCG	1 cut(s)	86
MwoI	GCNNNNNNNGC	8 cut(s)	21, 30, 45, 234, 323, 370, 386, 419
NaeI	GCCGGC	1 cut(s)	226
NarI	GGCGCC	1 cut(s)	222
NdeII	GATC	4 cut(s)	61, 73, 103, 613
NgoMIV	GCCGGC	1 cut(s)	224
NlaIII	CATG	2 cut(s)	380, 548
NlaIV	GGNNCC	3 cut(s)	52, 223, 692
NmuCI	GTSAC	3 cut(s)	190, 488, 619
NspI	RCATGY	2 cut(s)	380, 548
PaeI	GCATGC	1 cut(s)	380
PauI	GCGCGC	1 cut(s)	84
PcsI	WCGNNNNNNNCGW	2 cut(s)	377, 454
PdiI	GCCGGC	1 cut(s)	226
PfeI	GAWTC	1 cut(s)	167
PflMI	CCANNNNNTGG	1 cut(s)	687
PkrI	GCNGC	4 cut(s)	50, 239, 375, 412
PleI	GAGTC	3 cut(s)	261, 649, 685
PluTI	GGCGCC	1 cut(s)	225
PmaCI	CACGTG	1 cut(s)	426
PmlI	CACGTG	1 cut(s)	426
PpsI	GAGTC	3 cut(s)	261, 649, 685
Ppu21I	YACGTR	1 cut(s)	426
PpuMI	RGGWCCY	1 cut(s)	691
PsiI	TTATAA	1 cut(s)	668
Psp5II	RGGWCCY	1 cut(s)	691
PspCI	CACGTG	1 cut(s)	426
PspN4I	GGNNCC	3 cut(s)	52, 223, 692
PspPI	GGNCC	2 cut(s)	341, 691
PspPPI	RGGWCCY	1 cut(s)	691
PsuI	RGATCY	1 cut(s)	73
PteI	GCGCGC	1 cut(s)	84
RseI	CAYNNNNRTG	1 cut(s)	401
SaqAI	TTAA	2 cut(s)	204, 438
SatI	GCNGC	4 cut(s)	49, 238, 374, 411
Sau3AI	GATC	4 cut(s)	61, 73, 103, 613
Sau96I	GGNCC	2 cut(s)	341, 691
SchI	GAGTC	3 cut(s)	261, 649, 686
SfoI	GGCGCC	1 cut(s)	223
SinI	GGWCC	2 cut(s)	341, 691
SmiMI	CAYNNNNRTG	1 cut(s)	401
SphI	GCATGC	1 cut(s)	380
Sse9I	AATT	4 cut(s)	522, 599, 663, 669
SsiI	CCGC	3 cut(s)	48, 184, 237
SspDI	GGCGCC	1 cut(s)	221
SspMI	CTAG	2 cut(s)	260, 264
TaaI	ACNGT	5 cut(s)	59, 345, 450, 488, 584
TaiI	ACGT	3 cut(s)	21, 150, 428
TaqI	TCGA	2 cut(s)	161, 200
TasI	AATT	4 cut(s)	522, 599, 663, 669
TauI	GCSGC	2 cut(s)	51, 240
TfiI	GAWTC	1 cut(s)	167
Tru1I	TTAA	2 cut(s)	204, 438
Tru9I	TTAA	2 cut(s)	204, 438
TseFI	GTSAC	3 cut(s)	190, 488, 619
TseI	GCWGC	2 cut(s)	373, 410
Tsp45I	GTSAC	3 cut(s)	190, 488, 619
TspGWI	ACGGA	1 cut(s)	102
Van91I	CCANNNNNTGG	1 cut(s)	687
VpaK11BI	GGWCC	2 cut(s)	341, 691
XagI	CCTNNNNNAGG	1 cut(s)	295
XapI	RAATTY	2 cut(s)	522, 599
XceI	RCATGY	2 cut(s)	380, 548
XmiI	GTMKAC	2 cut(s)	393, 466
XspI	CTAG	2 cut(s)	260, 264
ZraI	GACGTC	1 cut(s)	19

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.