Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0001014

Physical Location & Seq

Genomic Coordinates Forward (+)

4200816 .. 4204725

Gene Structure 3910 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00221410.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 888 bp

ATGCTTCTTACCGGGCATAACACGCAGCATACGAGCTTGGCCGTATACATACTTATGCGTGCTGCCGTGTTGGCCACGCGCTGTGGGATTAAAAGCAAACGGTTTGGTCGTGTTTGTAGACCTCTCACTTGGAAGCATGGTGACATTTTTCTTATGTGTCTCTCCTCTTCGCAAATTCTGTCTGCTTACATATTGAAGCAGGAGAGTTTGCCTCTGTCATATAAATCCTTTCTCAACAAACATGGGGGAAAGGATATCACAATTTTGCAAGGTGTTAAAGAGATTGCAAGTGGCTTACCGTTTACTAATTTGGAAGCAATAGAAAGATACTACAAATCTGTGGGAACAAATATTAAACTAGATCCAGCCATGAAAGTTCCCTGCACGATTGTACACGGAGCTCTTATAGTTCATCGGCAAGACCTCTTGAAAAGGCATTACACTATACTACTAAAGGGTCTTCTTGGCACTGCAAGATCAAGCTTGTTTCTTTCTGTATATTGCACATCTGCCTGGATGTGGACATGCTTGCTTTTTAGGATTTTCAAGATGTGTAATGTACCAATGGTAGCAATGGGGACGTTCCCGACTGGCCTGGCCTTGGCTATTGAGAAGAAAAGCAGGCGTACTGAGATATCACTCTACTGTCTCGCTCGAGCGATTGAGAGCTTTTTCACCTGCATGGCTGATACCGGATACTTGCCACAAACAAAAAAATTGAAGAGAGCTGACGTTGTGATCTTTAGCTTATCAACCGCCATCATAATGCATTGCTATGCAGAGGAGAGGGAAGTGTTCAGATCCAAGTACTTGAATGTTCTTGACTGGGTTTTGGCGTCCCACCTCCTCCTTGTGAAACCCCCCGCTGCAAAAAGAGTTAATAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TMEM135_C_rich

Protein Analysis

295

Amino Acids

33.26

Weight (kDa)

9.81

Isoelectric Point (pI)

49.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001014)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G34630 AT1G34630 AT1G34630 AT1G34630 AT1G34630
fragaria_vesca	FvH4_5g37331 FvH4_5g37331
malus_domestica	MD08G1182800.v1.1
prunus_persica	Prupe.1G517000_v2.0.a1 Prupe.1G517000_v2.0.a1
pyrus_communis	pycom08g15660
rosa_chinensis	RchiOBHm_Chr3g0470741 RchiOBHm_Chr4g0408951 RchiOBHm_Chr7g0238981
rosa_laevigata	RLG00000000793 RLG00000007867 RLG00000014356 RLG00000015234 RLG00000016579 RLG00000020758
rosa_multiflora	Rmu_co8298683.1_g000001 Rmu_sc0002152.1_g000014 Rmu_sc0004132.1_g000004 Rmu_sc0004879.1_g000005 Rmu_sc0005866.1_g000014 Rmu_sc0010178.1_g000001 Rmu_sc0029797.1_g000001 Rmu_sc0032697.1_g000001 Rmu_sc0034117.1_g000001 Rmu_ssc0000233.1_g000066
rosa_roxburghii	Rroxscaffold_3G00221410 Rroxscaffold_3G00221420
rosa_rugosa	Rorug03G0157600 Rorug05G0148200 Rorug05G0232900 Rorug05G0238700 Rorug07G0324200.1
rosa_samantha	Rh1BG208000 Rh1DG234700 Rh2AG003700 Rh2AG216800 Rh2DG222500 Rh3AG161900 Rh3AG329400 Rh3BG186700 Rh3CG176900 Rh3DG308000 Rh4AG125400 Rh4AG152700 Rh4BG154900 Rh4CG133600 Rh4DG112900 Rh5AG299600 Rh7AG465300 Rh7AG479200 Rh7BG451800 Rh7CG251000 Rh7CG496300 Rh7DG343400 Rh7DG463900
rosa_wichuraiana	Rw7G040000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	686
Acc36I	ACCTGC	1 cut(s)	686
AccI	GTMKAC	2 cut(s)	45, 118
AccII	CGCG	1 cut(s)	79
AciI	CCGC	2 cut(s)	756, 864
AclWI	GGATC	2 cut(s)	356, 795
AcoI	YGGCCR	2 cut(s)	39, 72
AcsI	RAATTY	1 cut(s)	174
AcyI	GRCGYC	1 cut(s)	836
AfaI	GTAC	4 cut(s)	393, 561, 628, 809
AfiI	CCNNNNNNNGG	2 cut(s)	519, 601
AgsI	TTSAA	5 cut(s)	196, 430, 547, 721, 814
AjnI	CCWGG	2 cut(s)	512, 594
AluBI	AGCT	6 cut(s)	36, 401, 483, 669, 728, 747
AluI	AGCT	6 cut(s)	36, 401, 483, 669, 728, 747
Alw21I	GWGCWC	1 cut(s)	403
Alw26I	GTCTC	2 cut(s)	164, 653
AlwI	GGATC	2 cut(s)	356, 795
Ama87I	CYCGRG	1 cut(s)	654
AoxI	GGCC	4 cut(s)	39, 72, 592, 597
ApeKI	GCWGC	3 cut(s)	25, 62, 866
ApoI	RAATTY	1 cut(s)	174
AspLEI	GCGC	1 cut(s)	81
AsuC2I	CCSGG	1 cut(s)	13
AsuHPI	GGTGA	2 cut(s)	152, 667
AvaI	CYCGRG	1 cut(s)	654
BalI	TGGCCA	1 cut(s)	74
BanII	GRGCYC	1 cut(s)	403
BbsI	GAAGAC	1 cut(s)	452
Bbv12I	GWGCWC	1 cut(s)	403
BbvI	GCAGC	3 cut(s)	37, 49, 853
BccI	CCATC	1 cut(s)	767
BceAI	ACGGC	2 cut(s)	26, 50
BciT130I	CCWGG	2 cut(s)	514, 596
BciVI	GTATCC	1 cut(s)	689
BcnI	CCSGG	1 cut(s)	13
BcoDI	GTCTC	2 cut(s)	164, 653
BfaI	CTAG	1 cut(s)	359
BfuAI	ACCTGC	1 cut(s)	686
BfuI	GTATCC	1 cut(s)	689
BglI	GCCNNNNNGGC	1 cut(s)	71
BisI	GCNGC	3 cut(s)	26, 63, 867
BlsI	GCNGC	3 cut(s)	27, 64, 868
BmcAI	AGTACT	1 cut(s)	809
Bme1390I	CCNGG	3 cut(s)	13, 514, 596
BmeT110I	CYCGRG	1 cut(s)	654
BmrFI	CCNGG	3 cut(s)	13, 514, 596
BmrI	ACTGGG	1 cut(s)	835
BmuI	ACTGGG	1 cut(s)	835
BpiI	GAAGAC	1 cut(s)	452
BplI	GAGNNNNNCTC	2 cut(s)	196, 228
BpuMI	CCSGG	1 cut(s)	13
BsaHI	GRCGYC	1 cut(s)	836
BsaJI	CCNNGG	1 cut(s)	600
BsaWI	WCCGGW	1 cut(s)	692
Bsc4I	CCNNNNNNNGG	2 cut(s)	519, 601
Bse1I	ACTGG	2 cut(s)	595, 830
Bse3DI	GCAATG	2 cut(s)	579, 769
BseBI	CCWGG	2 cut(s)	514, 596
BseDI	CCNNGG	1 cut(s)	600
BseGI	GGATG	1 cut(s)	522
BseLI	CCNNNNNNNGG	2 cut(s)	519, 601
BseMI	GCAATG	2 cut(s)	579, 769
BseMII	CTCAG	1 cut(s)	621
BseNI	ACTGG	2 cut(s)	595, 830
BseRI	GAGGAG	3 cut(s)	154, 797, 836
BseXI	GCAGC	3 cut(s)	37, 49, 853
BsgI	GTGCAG	1 cut(s)	367
Bsh1236I	CGCG	1 cut(s)	79
BshFI	GGCC	4 cut(s)	41, 74, 594, 599
BsiHKAI	GWGCWC	1 cut(s)	403
BsiHKCI	CYCGRG	1 cut(s)	654
BsiSI	CCGG	2 cut(s)	12, 693
BslFI	GGGAC	2 cut(s)	592, 823
BslI	CCNNNNNNNGG	2 cut(s)	519, 601
BsmAI	GTCTC	2 cut(s)	164, 653
BsmFI	GGGAC	2 cut(s)	592, 823
BsnI	GGCC	4 cut(s)	41, 74, 594, 599
BsoBI	CYCGRG	1 cut(s)	654
Bsp1286I	GDGCHC	1 cut(s)	403
Bsp1407I	TGTACA	1 cut(s)	391
Bsp143I	GATC	4 cut(s)	361, 476, 738, 800
BspACI	CCGC	2 cut(s)	756, 864
BspANI	GGCC	4 cut(s)	41, 74, 594, 599
BspCNI	CTCAG	1 cut(s)	622
BspFNI	CGCG	1 cut(s)	79
BspMI	ACCTGC	1 cut(s)	686
BspPI	GGATC	2 cut(s)	356, 795
BsrDI	GCAATG	2 cut(s)	579, 769
BsrGI	TGTACA	1 cut(s)	391
BsrI	ACTGG	2 cut(s)	595, 830
BssECI	CCNNGG	1 cut(s)	600
BssMI	GATC	4 cut(s)	361, 476, 738, 800
BssNAI	GTATAC	1 cut(s)	46
BssNI	GRCGYC	1 cut(s)	836
BssT1I	CCWWGG	1 cut(s)	600
Bst1107I	GTATAC	1 cut(s)	46
Bst2UI	CCWGG	2 cut(s)	514, 596
Bst4CI	ACNGT	3 cut(s)	102, 300, 647
Bst6I	CTCTTC	2 cut(s)	172, 716
BstACI	GRCGYC	1 cut(s)	836
BstAUI	TGTACA	1 cut(s)	391
BstC8I	GCNNGC	3 cut(s)	60, 530, 623
BstDEI	CTNAG	1 cut(s)	630
BstF5I	GGATG	1 cut(s)	522
BstFNI	CGCG	1 cut(s)	79
BstHHI	GCGC	1 cut(s)	81
BstKTI	GATC	4 cut(s)	364, 479, 741, 803
BstMAI	GTCTC	2 cut(s)	164, 653
BstMBI	GATC	4 cut(s)	361, 476, 738, 800
BstMWI	GCNNNNNNNGC	2 cut(s)	22, 71
BstNI	CCWGG	2 cut(s)	514, 596
BstNSI	RCATGY	1 cut(s)	528
BstSCI	CCNGG	3 cut(s)	11, 512, 594
BstUI	CGCG	1 cut(s)	79
BstV1I	GCAGC	3 cut(s)	37, 49, 853
BstV2I	GAAGAC	1 cut(s)	452
BstX2I	RGATCY	2 cut(s)	361, 800
BstYI	RGATCY	2 cut(s)	361, 800
BstZ17I	GTATAC	1 cut(s)	46
BsuI	GTATCC	1 cut(s)	689
BsuRI	GGCC	4 cut(s)	41, 74, 594, 599
BtsCI	GGATG	1 cut(s)	522
BtsI	GCAGTG	1 cut(s)	468
BtsIMutI	CAGTG	1 cut(s)	468
BveI	ACCTGC	1 cut(s)	686
Cac8I	GCNNGC	3 cut(s)	60, 530, 623
CfoI	GCGC	1 cut(s)	81
CseI	GACGC	1 cut(s)	825
Csp6I	GTAC	4 cut(s)	392, 560, 627, 808
CviAII	CATG	5 cut(s)	137, 242, 370, 525, 682
CviQI	GTAC	4 cut(s)	392, 560, 627, 808
DdeI	CTNAG	1 cut(s)	630
DpnI	GATC	4 cut(s)	363, 478, 740, 802
DpnII	GATC	4 cut(s)	361, 476, 738, 800
EaeI	YGGCCR	2 cut(s)	39, 72
Eam1104I	CTCTTC	2 cut(s)	172, 716
EarI	CTCTTC	2 cut(s)	172, 716
Ecl136II	GAGCTC	1 cut(s)	401
Eco130I	CCWWGG	1 cut(s)	600
Eco24I	GRGCYC	1 cut(s)	403
Eco32I	GATATC	2 cut(s)	256, 636
Eco53kI	GAGCTC	1 cut(s)	401
Eco88I	CYCGRG	1 cut(s)	654
EcoICRI	GAGCTC	1 cut(s)	401
EcoRII	CCWGG	2 cut(s)	512, 594
EcoRV	GATATC	2 cut(s)	256, 636
EcoT14I	CCWWGG	1 cut(s)	600
EcoT22I	ATGCAT	1 cut(s)	771
EcoT38I	GRGCYC	1 cut(s)	403
ErhI	CCWWGG	1 cut(s)	600
FaeI	CATG	5 cut(s)	140, 245, 373, 528, 685
FaqI	GGGAC	2 cut(s)	592, 823
FatI	CATG	5 cut(s)	136, 241, 369, 524, 681
FauI	CCCGC	1 cut(s)	871
FblI	GTMKAC	2 cut(s)	45, 118
Fnu4HI	GCNGC	3 cut(s)	26, 63, 867
FokI	GGATG	1 cut(s)	529
FriOI	GRGCYC	1 cut(s)	403
Fsp4HI	GCNGC	3 cut(s)	26, 63, 867
FspBI	CTAG	1 cut(s)	359
GlaI	GCGC	1 cut(s)	80
GluI	GCNGC	3 cut(s)	26, 63, 867
HaeIII	GGCC	4 cut(s)	41, 74, 594, 599
HapII	CCGG	2 cut(s)	12, 693
HgaI	GACGC	1 cut(s)	825
HhaI	GCGC	1 cut(s)	81
Hin1I	GRCGYC	1 cut(s)	836
Hin1II	CATG	5 cut(s)	140, 245, 373, 528, 685
Hin6I	GCGC	1 cut(s)	79
HinP1I	GCGC	1 cut(s)	79
HindIII	AAGCTT	1 cut(s)	481
HpaII	CCGG	2 cut(s)	12, 693
HphI	GGTGA	2 cut(s)	152, 667
Hpy166II	GTNNAC	5 cut(s)	46, 119, 303, 394, 522
Hpy188I	TCNGA	1 cut(s)	800
Hpy188III	TCNNGA	4 cut(s)	427, 547, 586, 821
Hpy8I	GTNNAC	5 cut(s)	46, 119, 303, 394, 522
HpyCH4III	ACNGT	3 cut(s)	102, 300, 647
HpyCH4IV	ACGT	2 cut(s)	581, 732
HpyCH4V	TGCA	9 cut(s)	268, 287, 384, 473, 504, 681, 769, 779, 869
HpyF10VI	GCNNNNNNNGC	2 cut(s)	22, 71
HpyF3I	CTNAG	1 cut(s)	630
HpySE526I	ACGT	2 cut(s)	581, 732
Hsp92I	GRCGYC	1 cut(s)	836
Hsp92II	CATG	5 cut(s)	140, 245, 373, 528, 685
HspAI	GCGC	1 cut(s)	79
Kzo9I	GATC	4 cut(s)	361, 476, 738, 800
LmnI	GCTCC	1 cut(s)	398
Lsp1109I	GCAGC	3 cut(s)	37, 49, 853
MaeI	CTAG	1 cut(s)	359
MaeII	ACGT	2 cut(s)	581, 732
MaeIII	GTNAC	1 cut(s)	140
MalI	GATC	4 cut(s)	363, 478, 740, 802
MboI	GATC	4 cut(s)	361, 476, 738, 800
MboII	GAAGA	4 cut(s)	159, 452, 625, 733
MflI	RGATCY	2 cut(s)	361, 800
MhlI	GDGCHC	1 cut(s)	403
MlsI	TGGCCA	1 cut(s)	74
MluCI	AATT	4 cut(s)	174, 261, 307, 716
MluNI	TGGCCA	1 cut(s)	74
MnlI	CCTC	8 cut(s)	132, 175, 222, 434, 775, 780, 854, 857
Mox20I	TGGCCA	1 cut(s)	74
Mph1103I	ATGCAT	1 cut(s)	771
MscI	TGGCCA	1 cut(s)	74
MseI	TTAA	4 cut(s)	90, 276, 354, 879
MslI	CAYNNNNRTG	4 cut(s)	53, 680, 764, 774
Msp20I	TGGCCA	1 cut(s)	74
MspA1I	CMGCKG	1 cut(s)	866
MspI	CCGG	2 cut(s)	12, 693
MspR9I	CCNGG	3 cut(s)	13, 514, 596
MvaI	CCWGG	2 cut(s)	514, 596
MvnI	CGCG	1 cut(s)	79
MwoI	GCNNNNNNNGC	2 cut(s)	22, 71
NciI	CCSGG	1 cut(s)	13
NdeII	GATC	4 cut(s)	361, 476, 738, 800
NlaIII	CATG	5 cut(s)	140, 245, 373, 528, 685
NmuCI	GTSAC	1 cut(s)	140
NsiI	ATGCAT	1 cut(s)	771
NspI	RCATGY	1 cut(s)	528
PaeR7I	CTCGAG	1 cut(s)	654
PaqCI	CACCTGC	1 cut(s)	686
PcsI	WCGNNNNNNNCGW	2 cut(s)	29, 106
PkrI	GCNGC	3 cut(s)	27, 64, 868
Psp124BI	GAGCTC	1 cut(s)	403
Psp6I	CCWGG	2 cut(s)	512, 594
PspGI	CCWGG	2 cut(s)	512, 594
PspXI	VCTCGAGB	1 cut(s)	654
PsuI	RGATCY	2 cut(s)	361, 800
RsaI	GTAC	4 cut(s)	393, 561, 628, 809
RsaNI	GTAC	4 cut(s)	392, 560, 627, 808
RseI	CAYNNNNRTG	4 cut(s)	53, 680, 764, 774
SacI	GAGCTC	1 cut(s)	403
SaqAI	TTAA	4 cut(s)	90, 276, 354, 879
SatI	GCNGC	3 cut(s)	26, 63, 867
Sau3AI	GATC	4 cut(s)	361, 476, 738, 800
ScaI	AGTACT	1 cut(s)	809
ScrFI	CCNGG	3 cut(s)	13, 514, 596
SduI	GDGCHC	1 cut(s)	403
Sfr274I	CTCGAG	1 cut(s)	654
SlaI	CTCGAG	1 cut(s)	654
SmiMI	CAYNNNNRTG	4 cut(s)	53, 680, 764, 774
SmlI	CTYRAG	1 cut(s)	654
SmoI	CTYRAG	1 cut(s)	654
Sse9I	AATT	4 cut(s)	174, 261, 307, 716
SsiI	CCGC	2 cut(s)	756, 864
SspI	AATATT	1 cut(s)	352
SspMI	CTAG	1 cut(s)	359
SstI	GAGCTC	1 cut(s)	403
StyD4I	CCNGG	3 cut(s)	11, 512, 594
StyI	CCWWGG	1 cut(s)	600
TaaI	ACNGT	3 cut(s)	102, 300, 647
TaiI	ACGT	2 cut(s)	584, 735
TaqI	TCGA	1 cut(s)	655
TasI	AATT	4 cut(s)	174, 261, 307, 716
TatI	WGTACW	2 cut(s)	391, 807
Tru1I	TTAA	4 cut(s)	90, 276, 354, 879
Tru9I	TTAA	4 cut(s)	90, 276, 354, 879
TscAI	CASTG	1 cut(s)	475
TseFI	GTSAC	1 cut(s)	140
TseI	GCWGC	3 cut(s)	25, 62, 866
Tsp45I	GTSAC	1 cut(s)	140
TspDTI	ATGAA	2 cut(s)	386, 401
TspGWI	ACGGA	1 cut(s)	411
TspRI	CASTG	1 cut(s)	475
XapI	RAATTY	1 cut(s)	174
XceI	RCATGY	1 cut(s)	528
XhoI	CTCGAG	1 cut(s)	654
XmiI	GTMKAC	2 cut(s)	45, 118
XspI	CTAG	1 cut(s)	359
ZrmI	AGTACT	1 cut(s)	809
Zsp2I	ATGCAT	1 cut(s)	771

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.