Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0001014

Physical Location & Seq

Genomic Coordinates Forward (+)

63414572 .. 63415501

Gene Structure 930 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000015234

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGTTGCCGGACTGCGACGTCTGCACCTGTTGCGCCTGCCAGAATGGCTGCTCCAATGGTGATCACGCCGAAGATCTGGTCGTGACTGTTTCGATTAAGGGTTTCACCATCGGCGCCGGCCTCAAAGGCGGCCTCGCCGTCTTCTCCATCCTAGCTAGACTCAGAAAGAGAAAGCTCTTAACCTCTCTCAGGACTGAGGGTGCAATTACGAATAATGAAGCAATTGTTACTGTTTTGAAGGAGACCTTGAGATATGGTCTGTTTCTTGGGACTTTTGCAGGCACATTTGTTTCAGTGGATGAAATTATTGCTTCTTTGGGAGGCCACCGTAGGACAGCTAAGTGGAGGGCTTTGTTAGCAGGGCTTATAGCAGGACCGTCTATGCTTCTTACCGGGCATAACACGCAGCATACGAGCCTGGCTATATACATACTTATGCGTGCTGCCGTGTTGGCCACGCGTTGTGGGATTAAAAGCAAACGGTTTGGTCGTGTTTGTAGACCTCTCACTTGGAAGCACGGTGACATTTTCCTTATGTGTCTCTCCTCTTTGCAAATTCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TMEM135_C_rich

Protein Analysis

188

Amino Acids

20.14

Weight (kDa)

9.56

Isoelectric Point (pI)

26.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001014)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G34630 AT1G34630 AT1G34630 AT1G34630 AT1G34630
fragaria_vesca	FvH4_5g37331 FvH4_5g37331
malus_domestica	MD08G1182800.v1.1
prunus_persica	Prupe.1G517000_v2.0.a1 Prupe.1G517000_v2.0.a1
pyrus_communis	pycom08g15660
rosa_chinensis	RchiOBHm_Chr3g0470741 RchiOBHm_Chr4g0408951 RchiOBHm_Chr7g0238981
rosa_laevigata	RLG00000000793 RLG00000007867 RLG00000014356 RLG00000015234 RLG00000016579 RLG00000020758
rosa_multiflora	Rmu_co8298683.1_g000001 Rmu_sc0002152.1_g000014 Rmu_sc0004132.1_g000004 Rmu_sc0004879.1_g000005 Rmu_sc0005866.1_g000014 Rmu_sc0010178.1_g000001 Rmu_sc0029797.1_g000001 Rmu_sc0032697.1_g000001 Rmu_sc0034117.1_g000001 Rmu_ssc0000233.1_g000066
rosa_roxburghii	Rroxscaffold_3G00221410 Rroxscaffold_3G00221420
rosa_rugosa	Rorug03G0157600 Rorug05G0148200 Rorug05G0232900 Rorug05G0238700 Rorug07G0324200.1
rosa_samantha	Rh1BG208000 Rh1DG234700 Rh2AG003700 Rh2AG216800 Rh2DG222500 Rh3AG161900 Rh3AG329400 Rh3BG186700 Rh3CG176900 Rh3DG308000 Rh4AG125400 Rh4AG152700 Rh4BG154900 Rh4CG133600 Rh4DG112900 Rh5AG299600 Rh7AG465300 Rh7AG479200 Rh7BG451800 Rh7CG251000 Rh7CG496300 Rh7DG343400 Rh7DG463900
rosa_wichuraiana	Rw7G040000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	17
AatII	GACGTC	1 cut(s)	21
AccB1I	GGYRCC	1 cut(s)	113
AccI	GTMKAC	1 cut(s)	499
AccII	CGCG	1 cut(s)	460
AciI	CCGC	1 cut(s)	129
AcoI	YGGCCR	1 cut(s)	453
AcsI	RAATTY	1 cut(s)	555
AcyI	GRCGYC	2 cut(s)	18, 114
AfiI	CCNNNNNNNGG	1 cut(s)	189
AflIII	ACRYGT	1 cut(s)	458
AgsI	TTSAA	1 cut(s)	238
AjnI	CCWGG	1 cut(s)	417
AluBI	AGCT	3 cut(s)	155, 175, 338
AluI	AGCT	3 cut(s)	155, 175, 338
Alw26I	GTCTC	2 cut(s)	236, 545
AoxI	GGCC	4 cut(s)	118, 130, 322, 453
ApeKI	GCWGC	3 cut(s)	48, 406, 443
ApoI	RAATTY	1 cut(s)	555
ArsI	GACNNNNNNTTYG	2 cut(s)	63, 95
AspLEI	GCGC	2 cut(s)	35, 116
AspS9I	GGNCC	1 cut(s)	374
AsuC2I	CCSGG	1 cut(s)	394
AsuHPI	GGTGA	3 cut(s)	71, 97, 533
AvaII	GGWCC	1 cut(s)	374
BalI	TGGCCA	1 cut(s)	455
BanI	GGYRCC	1 cut(s)	113
BbsI	GAAGAC	1 cut(s)	133
BbvI	GCAGC	3 cut(s)	35, 418, 430
BccI	CCATC	2 cut(s)	116, 155
BceAI	ACGGC	2 cut(s)	122, 431
BciT130I	CCWGG	1 cut(s)	419
BclI	TGATCA	1 cut(s)	61
BcnI	CCSGG	1 cut(s)	394
BcoDI	GTCTC	2 cut(s)	236, 545
BfaI	CTAG	2 cut(s)	152, 156
BfoI	RGCGCY	1 cut(s)	117
BglI	GCCNNNNNGGC	3 cut(s)	45, 126, 452
BglII	AGATCT	1 cut(s)	73
BisI	GCNGC	4 cut(s)	49, 130, 407, 444
BlsI	GCNGC	4 cut(s)	50, 131, 408, 445
Bme1390I	CCNGG	2 cut(s)	394, 419
Bme18I	GGWCC	1 cut(s)	374
BmgT120I	GGNCC	1 cut(s)	374
BmiI	GGNNCC	1 cut(s)	115
BmrFI	CCNGG	2 cut(s)	394, 419
BpiI	GAAGAC	1 cut(s)	133
BpuEI	CTTGAG	1 cut(s)	268
BpuMI	CCSGG	1 cut(s)	394
BsaHI	GRCGYC	2 cut(s)	18, 114
BsaI	GGTCTC	1 cut(s)	236
Bsc4I	CCNNNNNNNGG	1 cut(s)	189
Bse118I	RCCGGY	1 cut(s)	116
BseBI	CCWGG	1 cut(s)	419
BseGI	GGATG	2 cut(s)	147, 304
BseLI	CCNNNNNNNGG	1 cut(s)	189
BseMII	CTCAG	3 cut(s)	175, 186, 202
BseRI	GAGGAG	1 cut(s)	535
BseXI	GCAGC	3 cut(s)	35, 418, 430
BsgI	GTGCAG	1 cut(s)	7
Bsh1236I	CGCG	1 cut(s)	460
BshFI	GGCC	4 cut(s)	120, 132, 324, 455
BshNI	GGYRCC	1 cut(s)	113
BsiSI	CCGG	3 cut(s)	8, 117, 393
BslFI	GGGAC	1 cut(s)	283
BslI	CCNNNNNNNGG	1 cut(s)	189
BsmAI	GTCTC	2 cut(s)	236, 545
BsmFI	GGGAC	1 cut(s)	283
BsnI	GGCC	4 cut(s)	120, 132, 324, 455
Bso31I	GGTCTC	1 cut(s)	236
Bsp143I	GATC	2 cut(s)	61, 73
BspACI	CCGC	1 cut(s)	129
BspANI	GGCC	4 cut(s)	120, 132, 324, 455
BspCNI	CTCAG	3 cut(s)	174, 187, 201
BspFNI	CGCG	1 cut(s)	460
BspLI	GGNNCC	1 cut(s)	115
BspT107I	GGYRCC	1 cut(s)	113
BspTNI	GGTCTC	1 cut(s)	236
BsrFI	RCCGGY	1 cut(s)	116
BssAI	RCCGGY	1 cut(s)	116
BssMI	GATC	2 cut(s)	61, 73
BssNI	GRCGYC	2 cut(s)	18, 114
Bst2UI	CCWGG	1 cut(s)	419
Bst4CI	ACNGT	6 cut(s)	88, 232, 329, 378, 483, 521
BstACI	GRCGYC	2 cut(s)	18, 114
BstAPI	GCANNNNNTGC	1 cut(s)	30
BstC8I	GCNNGC	4 cut(s)	37, 118, 280, 441
BstDEI	CTNAG	4 cut(s)	161, 188, 195, 339
BstENI	CCTNNNNNAGG	1 cut(s)	187
BstF5I	GGATG	2 cut(s)	147, 304
BstFNI	CGCG	1 cut(s)	460
BstH2I	RGCGCY	1 cut(s)	117
BstHHI	GCGC	2 cut(s)	35, 116
BstKTI	GATC	2 cut(s)	64, 76
BstMAI	GTCTC	2 cut(s)	236, 545
BstMBI	GATC	2 cut(s)	61, 73
BstMWI	GCNNNNNNNGC	7 cut(s)	21, 30, 45, 126, 356, 403, 452
BstNI	CCWGG	1 cut(s)	419
BstSCI	CCNGG	2 cut(s)	392, 417
BstUI	CGCG	1 cut(s)	460
BstV1I	GCAGC	3 cut(s)	35, 418, 430
BstV2I	GAAGAC	1 cut(s)	133
BstX2I	RGATCY	1 cut(s)	73
BstYI	RGATCY	1 cut(s)	73
BsuRI	GGCC	4 cut(s)	120, 132, 324, 455
BtsCI	GGATG	2 cut(s)	147, 304
BtsIMutI	CAGTG	1 cut(s)	300
Cac8I	GCNNGC	4 cut(s)	37, 118, 280, 441
CfoI	GCGC	2 cut(s)	35, 116
Cfr10I	RCCGGY	1 cut(s)	116
Cfr13I	GGNCC	1 cut(s)	374
DdeI	CTNAG	4 cut(s)	161, 188, 195, 339
DinI	GGCGCC	1 cut(s)	115
DpnI	GATC	2 cut(s)	63, 75
DpnII	GATC	2 cut(s)	61, 73
DrdI	GACNNNNNNGTC	1 cut(s)	17
DseDI	GACNNNNNNGTC	1 cut(s)	17
EaeI	YGGCCR	1 cut(s)	453
Eco31I	GGTCTC	1 cut(s)	236
Eco47I	GGWCC	1 cut(s)	374
EcoNI	CCTNNNNNAGG	1 cut(s)	187
EcoRII	CCWGG	1 cut(s)	417
EgeI	GGCGCC	1 cut(s)	115
EheI	GGCGCC	1 cut(s)	115
FalI	AAGNNNNNCTT	2 cut(s)	230, 262
FaqI	GGGAC	1 cut(s)	283
FbaI	TGATCA	1 cut(s)	61
FblI	GTMKAC	1 cut(s)	499
Fnu4HI	GCNGC	4 cut(s)	49, 130, 407, 444
FokI	GGATG	2 cut(s)	134, 311
Fsp4HI	GCNGC	4 cut(s)	49, 130, 407, 444
FspBI	CTAG	2 cut(s)	152, 156
GlaI	GCGC	2 cut(s)	34, 115
GluI	GCNGC	4 cut(s)	49, 130, 407, 444
HaeII	RGCGCY	1 cut(s)	117
HaeIII	GGCC	4 cut(s)	120, 132, 324, 455
HapII	CCGG	3 cut(s)	8, 117, 393
HhaI	GCGC	2 cut(s)	35, 116
Hin1I	GRCGYC	2 cut(s)	18, 114
Hin6I	GCGC	2 cut(s)	33, 114
HinP1I	GCGC	2 cut(s)	33, 114
HinfI	GANTC	1 cut(s)	159
HpaII	CCGG	3 cut(s)	8, 117, 393
HphI	GGTGA	3 cut(s)	71, 97, 533
Hpy166II	GTNNAC	1 cut(s)	500
Hpy188I	TCNGA	1 cut(s)	164
Hpy188III	TCNNGA	2 cut(s)	82, 190
Hpy8I	GTNNAC	1 cut(s)	500
Hpy99I	CGWCG	1 cut(s)	20
HpyAV	CCTTC	1 cut(s)	232
HpyCH4III	ACNGT	6 cut(s)	88, 232, 329, 378, 483, 521
HpyCH4IV	ACGT	1 cut(s)	18
HpyCH4V	TGCA	4 cut(s)	24, 203, 278, 553
HpyF10VI	GCNNNNNNNGC	7 cut(s)	21, 30, 45, 126, 356, 403, 452
HpyF3I	CTNAG	4 cut(s)	161, 188, 195, 339
HpySE526I	ACGT	1 cut(s)	18
Hsp92I	GRCGYC	2 cut(s)	18, 114
HspAI	GCGC	2 cut(s)	33, 114
KasI	GGCGCC	1 cut(s)	113
KroI	GCCGGC	1 cut(s)	116
KroNI	GCCGGC	1 cut(s)	118
Ksp22I	TGATCA	1 cut(s)	61
Kzo9I	GATC	2 cut(s)	61, 73
LmnI	GCTCC	1 cut(s)	56
Lsp1109I	GCAGC	3 cut(s)	35, 418, 430
MaeI	CTAG	2 cut(s)	152, 156
MaeII	ACGT	1 cut(s)	18
MaeIII	GTNAC	3 cut(s)	82, 226, 521
MalI	GATC	2 cut(s)	63, 75
MboI	GATC	2 cut(s)	61, 73
MboII	GAAGA	2 cut(s)	83, 133
MfeI	CAATTG	1 cut(s)	222
MflI	RGATCY	1 cut(s)	73
MlsI	TGGCCA	1 cut(s)	455
MluCI	AATT	4 cut(s)	204, 222, 303, 555
MluI	ACGCGT	1 cut(s)	458
MluNI	TGGCCA	1 cut(s)	455
Mly113I	GGCGCC	1 cut(s)	114
MlyI	GAGTC	1 cut(s)	153
MnlI	CCTC	8 cut(s)	131, 143, 190, 193, 314, 339, 513, 556
Mox20I	TGGCCA	1 cut(s)	455
MroNI	GCCGGC	1 cut(s)	116
MscI	TGGCCA	1 cut(s)	455
MseI	TTAA	3 cut(s)	96, 179, 471
MslI	CAYNNNNRTG	1 cut(s)	434
Msp20I	TGGCCA	1 cut(s)	455
MspI	CCGG	3 cut(s)	8, 117, 393
MspR9I	CCNGG	2 cut(s)	394, 419
MunI	CAATTG	1 cut(s)	222
MvaI	CCWGG	1 cut(s)	419
MvnI	CGCG	1 cut(s)	460
MwoI	GCNNNNNNNGC	7 cut(s)	21, 30, 45, 126, 356, 403, 452
NaeI	GCCGGC	1 cut(s)	118
NarI	GGCGCC	1 cut(s)	114
NciI	CCSGG	1 cut(s)	394
NdeII	GATC	2 cut(s)	61, 73
NgoMIV	GCCGGC	1 cut(s)	116
NlaIV	GGNNCC	1 cut(s)	115
NmuCI	GTSAC	2 cut(s)	82, 521
PcsI	WCGNNNNNNNCGW	2 cut(s)	410, 487
PdiI	GCCGGC	1 cut(s)	118
PkrI	GCNGC	4 cut(s)	50, 131, 408, 445
PleI	GAGTC	1 cut(s)	153
PluTI	GGCGCC	1 cut(s)	117
PpsI	GAGTC	1 cut(s)	153
Psp6I	CCWGG	1 cut(s)	417
PspGI	CCWGG	1 cut(s)	417
PspN4I	GGNNCC	1 cut(s)	115
PspPI	GGNCC	1 cut(s)	374
PsuI	RGATCY	1 cut(s)	73
RseI	CAYNNNNRTG	1 cut(s)	434
SaqAI	TTAA	3 cut(s)	96, 179, 471
SatI	GCNGC	4 cut(s)	49, 130, 407, 444
Sau3AI	GATC	2 cut(s)	61, 73
Sau96I	GGNCC	1 cut(s)	374
SchI	GAGTC	1 cut(s)	153
ScrFI	CCNGG	2 cut(s)	394, 419
SetI	ASST	8 cut(s)	21, 29, 157, 177, 185, 248, 340, 505
SfoI	GGCGCC	1 cut(s)	115
SinI	GGWCC	1 cut(s)	374
SmiMI	CAYNNNNRTG	1 cut(s)	434
SmlI	CTYRAG	1 cut(s)	247
SmoI	CTYRAG	1 cut(s)	247
Sse9I	AATT	4 cut(s)	204, 222, 303, 555
SsiI	CCGC	1 cut(s)	129
SspDI	GGCGCC	1 cut(s)	113
SspMI	CTAG	2 cut(s)	152, 156
StyD4I	CCNGG	2 cut(s)	392, 417
TaaI	ACNGT	6 cut(s)	88, 232, 329, 378, 483, 521
TaiI	ACGT	1 cut(s)	21
TaqI	TCGA	1 cut(s)	92
TasI	AATT	4 cut(s)	204, 222, 303, 555
TauI	GCSGC	1 cut(s)	132
Tru1I	TTAA	3 cut(s)	96, 179, 471
Tru9I	TTAA	3 cut(s)	96, 179, 471
TscAI	CASTG	1 cut(s)	300
TseFI	GTSAC	2 cut(s)	82, 521
TseI	GCWGC	3 cut(s)	48, 406, 443
Tsp45I	GTSAC	2 cut(s)	82, 521
TspDTI	ATGAA	2 cut(s)	231, 315
TspRI	CASTG	1 cut(s)	300
VpaK11BI	GGWCC	1 cut(s)	374
XagI	CCTNNNNNAGG	1 cut(s)	187
XapI	RAATTY	1 cut(s)	555
XmiI	GTMKAC	1 cut(s)	499
XspI	CTAG	2 cut(s)	152, 156
ZraI	GACGTC	1 cut(s)	19

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.