Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004879.1

Orthogroup ID

OG0001014

Physical Location & Seq

Genomic Coordinates Reverse (-)

12004 .. 18305

Gene Structure 6302 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004879.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 876 bp

atggcttcactcttcattctccataactctccctcgctttccttctccccaagaacccacctttactctccgaaatggtgccgtttacgagctcaaatttcgctacggcgggtcgtgactgcttcgattaagggtttcaccatcggcgcaggcctcaaaggcgacctcgccgtcttctccatcctagctagactcagaaagagaaagctcttatcctctctcaggactgagggtgcgattatgaataatgaagcaattgttgctgttttgaaggagaccttgagatatggtctgtttcttgggacttttgcaggcacatttgtttcagtggatgagattattgcttctttgggaggccatcataagcatgttccttgttcttttatattcagcttcgcatggacagctaagtggagggctttgttagcagggcttatagcaggaccgtctatgcttcttaccgggcataacacgcagcatacgagcttggatgtatacatacttatgcgtgctgccgtgttggccacgcgttgtgggattaaaagcaaacggtttggtcgtattggagatattgttaaaagcaagacggcgagcatcgcggagccgcagttggcgacagcaaaaacgtcaagaagtgcaccatcatatgggaactctgtagttgggtgggatgtgagctatggagctgaattttttcctgttcctgactctatactgatcattcaaacagccacaaagatgactccatctgatgaaccattaaaagggatttcacagtttgttggagcttcaataggaacttggaatcgtaaaatccctgttaaagatacactaagtgatggtcatggtcacaattctcctcctccgagagcttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TMEM135_C_rich

Protein Analysis

291

Amino Acids

31.5

Weight (kDa)

10.31

Isoelectric Point (pI)

34.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001014)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G34630 AT1G34630 AT1G34630 AT1G34630 AT1G34630
fragaria_vesca	FvH4_5g37331 FvH4_5g37331
malus_domestica	MD08G1182800.v1.1
prunus_persica	Prupe.1G517000_v2.0.a1 Prupe.1G517000_v2.0.a1
pyrus_communis	pycom08g15660
rosa_chinensis	RchiOBHm_Chr3g0470741 RchiOBHm_Chr4g0408951 RchiOBHm_Chr7g0238981
rosa_laevigata	RLG00000000793 RLG00000007867 RLG00000014356 RLG00000015234 RLG00000016579 RLG00000020758
rosa_multiflora	Rmu_co8298683.1_g000001 Rmu_sc0002152.1_g000014 Rmu_sc0004132.1_g000004 Rmu_sc0004879.1_g000005 Rmu_sc0005866.1_g000014 Rmu_sc0010178.1_g000001 Rmu_sc0029797.1_g000001 Rmu_sc0032697.1_g000001 Rmu_sc0034117.1_g000001 Rmu_ssc0000233.1_g000066
rosa_roxburghii	Rroxscaffold_3G00221410 Rroxscaffold_3G00221420
rosa_rugosa	Rorug03G0157600 Rorug05G0148200 Rorug05G0232900 Rorug05G0238700 Rorug07G0324200.1
rosa_samantha	Rh1BG208000 Rh1DG234700 Rh2AG003700 Rh2AG216800 Rh2DG222500 Rh3AG161900 Rh3AG329400 Rh3BG186700 Rh3CG176900 Rh3DG308000 Rh4AG125400 Rh4AG152700 Rh4BG154900 Rh4CG133600 Rh4DG112900 Rh5AG299600 Rh7AG465300 Rh7AG479200 Rh7BG451800 Rh7CG251000 Rh7CG496300 Rh7DG343400 Rh7DG463900
rosa_wichuraiana	Rw7G040000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	170
AccB1I	GGYRCC	1 cut(s)	78
AccB7I	CCANNNNNTGG	1 cut(s)	647
AccI	GTMKAC	1 cut(s)	495
AccII	CGCG	2 cut(s)	529, 599
AciI	CCGC	3 cut(s)	109, 599, 605
AcoI	YGGCCR	1 cut(s)	522
AcsI	RAATTY	2 cut(s)	96, 689
AdeI	CACNNNGTG	1 cut(s)	836
AfiI	CCNNNNNNNGG	3 cut(s)	222, 647, 764
AflIII	ACRYGT	1 cut(s)	527
AgsI	TTSAA	3 cut(s)	271, 725, 792
Alw21I	GWGCWC	2 cut(s)	94, 640
Alw26I	GTCTC	1 cut(s)	269
Alw44I	GTGCAC	1 cut(s)	636
AoxI	GGCC	3 cut(s)	151, 355, 522
ApaLI	GTGCAC	1 cut(s)	636
ApeKI	GCWGC	2 cut(s)	475, 512
ApoI	RAATTY	2 cut(s)	96, 689
Asp700I	GAANNNNTTC	1 cut(s)	693
AspLEI	GCGC	1 cut(s)	149
AspS9I	GGNCC	1 cut(s)	443
AsuC2I	CCSGG	1 cut(s)	463
AsuHPI	GGTGA	1 cut(s)	130
AvaII	GGWCC	1 cut(s)	443
BaeGI	GKGCMC	1 cut(s)	640
BalI	TGGCCA	1 cut(s)	524
BanI	GGYRCC	1 cut(s)	78
BanII	GRGCYC	1 cut(s)	94
BbsI	GAAGAC	1 cut(s)	166
Bbv12I	GWGCWC	2 cut(s)	94, 640
BbvI	GCAGC	2 cut(s)	487, 499
BccI	CCATC	6 cut(s)	149, 188, 366, 649, 754, 833
BceAI	ACGGC	5 cut(s)	66, 122, 155, 500, 603
BclI	TGATCA	1 cut(s)	717
BcnI	CCSGG	1 cut(s)	463
BcoDI	GTCTC	1 cut(s)	269
BfaI	CTAG	2 cut(s)	185, 189
BfmI	CTRYAG	1 cut(s)	657
BglI	GCCNNNNNGGC	2 cut(s)	159, 521
BisI	GCNGC	3 cut(s)	476, 513, 605
BlsI	GCNGC	3 cut(s)	477, 514, 606
Bme1390I	CCNGG	1 cut(s)	463
Bme18I	GGWCC	1 cut(s)	443
BmgT120I	GGNCC	1 cut(s)	443
BmiI	GGNNCC	2 cut(s)	80, 603
BmrFI	CCNGG	1 cut(s)	463
BmsI	GCATC	1 cut(s)	603
BpiI	GAAGAC	1 cut(s)	166
BpuEI	CTTGAG	1 cut(s)	301
BpuMI	CCSGG	1 cut(s)	463
BsaI	GGTCTC	1 cut(s)	269
BsaXI	ACNNNNNCTCC	4 cut(s)	558, 588, 593, 623
Bsc4I	CCNNNNNNNGG	3 cut(s)	222, 647, 764
BseGI	GGATG	4 cut(s)	180, 337, 496, 676
BseLI	CCNNNNNNNGG	3 cut(s)	222, 647, 764
BseMII	CTCAG	3 cut(s)	208, 219, 235
BseRI	GAGGAG	2 cut(s)	849, 852
BseSI	GKGCMC	1 cut(s)	640
BseXI	GCAGC	2 cut(s)	487, 499
Bsh1236I	CGCG	2 cut(s)	529, 599
BshFI	GGCC	3 cut(s)	153, 357, 524
BshNI	GGYRCC	1 cut(s)	78
BsiHKAI	GWGCWC	2 cut(s)	94, 640
BsiSI	CCGG	1 cut(s)	462
BslFI	GGGAC	1 cut(s)	316
BslI	CCNNNNNNNGG	3 cut(s)	222, 647, 764
BsmAI	GTCTC	1 cut(s)	269
BsmFI	GGGAC	1 cut(s)	316
BsnI	GGCC	3 cut(s)	153, 357, 524
Bso31I	GGTCTC	1 cut(s)	269
Bsp1286I	GDGCHC	2 cut(s)	94, 640
Bsp143I	GATC	1 cut(s)	717
BspACI	CCGC	3 cut(s)	109, 599, 605
BspANI	GGCC	3 cut(s)	153, 357, 524
BspCNI	CTCAG	3 cut(s)	207, 220, 234
BspFNI	CGCG	2 cut(s)	529, 599
BspLI	GGNNCC	2 cut(s)	80, 603
BspT107I	GGYRCC	1 cut(s)	78
BspTNI	GGTCTC	1 cut(s)	269
BssMI	GATC	1 cut(s)	717
BssNAI	GTATAC	1 cut(s)	496
Bst1107I	GTATAC	1 cut(s)	496
Bst4CI	ACNGT	3 cut(s)	447, 552, 777
Bst6I	CTCTTC	1 cut(s)	17
BstAPI	GCANNNNNTGC	1 cut(s)	260
BstC8I	GCNNGC	4 cut(s)	151, 313, 510, 592
BstDEI	CTNAG	5 cut(s)	194, 221, 228, 408, 833
BstENI	CCTNNNNNAGG	1 cut(s)	220
BstF5I	GGATG	4 cut(s)	180, 337, 496, 676
BstFNI	CGCG	2 cut(s)	529, 599
BstHHI	GCGC	1 cut(s)	149
BstKTI	GATC	1 cut(s)	720
BstMAI	GTCTC	1 cut(s)	269
BstMBI	GATC	1 cut(s)	717
BstMWI	GCNNNNNNNGC	7 cut(s)	159, 260, 404, 425, 472, 521, 596
BstNSI	RCATGY	1 cut(s)	371
BstSCI	CCNGG	1 cut(s)	461
BstSFI	CTRYAG	1 cut(s)	657
BstSLI	GKGCMC	1 cut(s)	640
BstUI	CGCG	2 cut(s)	529, 599
BstV1I	GCAGC	2 cut(s)	487, 499
BstV2I	GAAGAC	1 cut(s)	166
BstZ17I	GTATAC	1 cut(s)	496
BsuRI	GGCC	3 cut(s)	153, 357, 524
BtgZI	GCGATG	1 cut(s)	580
BtsCI	GGATG	4 cut(s)	180, 337, 496, 676
BtsIMutI	CAGTG	1 cut(s)	333
Cac8I	GCNNGC	4 cut(s)	151, 313, 510, 592
CfoI	GCGC	1 cut(s)	149
Cfr13I	GGNCC	1 cut(s)	443
CviAII	CATG	3 cut(s)	368, 399, 845
DdeI	CTNAG	5 cut(s)	194, 221, 228, 408, 833
DpnI	GATC	1 cut(s)	719
DpnII	GATC	1 cut(s)	717
DraIII	CACNNNGTG	1 cut(s)	836
DrdI	GACNNNNNNGTC	1 cut(s)	170
DseDI	GACNNNNNNGTC	1 cut(s)	170
EaeI	YGGCCR	1 cut(s)	522
Eam1104I	CTCTTC	1 cut(s)	17
EarI	CTCTTC	1 cut(s)	17
Ecl136II	GAGCTC	1 cut(s)	92
Eco147I	AGGCCT	1 cut(s)	153
Eco24I	GRGCYC	1 cut(s)	94
Eco31I	GGTCTC	1 cut(s)	269
Eco47I	GGWCC	1 cut(s)	443
Eco53kI	GAGCTC	1 cut(s)	92
EcoICRI	GAGCTC	1 cut(s)	92
EcoNI	CCTNNNNNAGG	1 cut(s)	220
EcoT38I	GRGCYC	1 cut(s)	94
FaeI	CATG	3 cut(s)	371, 402, 848
FalI	AAGNNNNNCTT	2 cut(s)	263, 295
FaqI	GGGAC	1 cut(s)	316
FatI	CATG	3 cut(s)	367, 398, 844
FauI	CCCGC	1 cut(s)	102
FauNDI	CATATG	1 cut(s)	646
FbaI	TGATCA	1 cut(s)	717
FblI	GTMKAC	1 cut(s)	495
Fnu4HI	GCNGC	3 cut(s)	476, 513, 605
FokI	GGATG	4 cut(s)	167, 344, 503, 683
FriOI	GRGCYC	1 cut(s)	94
Fsp4HI	GCNGC	3 cut(s)	476, 513, 605
FspBI	CTAG	2 cut(s)	185, 189
GlaI	GCGC	1 cut(s)	148
GluI	GCNGC	3 cut(s)	476, 513, 605
HaeIII	GGCC	3 cut(s)	153, 357, 524
HapII	CCGG	1 cut(s)	462
HhaI	GCGC	1 cut(s)	149
Hin1II	CATG	3 cut(s)	371, 402, 848
Hin6I	GCGC	1 cut(s)	147
HinP1I	GCGC	1 cut(s)	147
HinfI	GANTC	4 cut(s)	192, 707, 742, 805
HpaII	CCGG	1 cut(s)	462
HphI	GGTGA	1 cut(s)	130
Hpy166II	GTNNAC	3 cut(s)	86, 496, 638
Hpy188I	TCNGA	4 cut(s)	72, 197, 751, 867
Hpy188III	TCNNGA	4 cut(s)	115, 223, 630, 704
Hpy8I	GTNNAC	3 cut(s)	86, 496, 638
HpyAV	CCTTC	2 cut(s)	52, 265
HpyCH4III	ACNGT	3 cut(s)	447, 552, 777
HpyCH4IV	ACGT	1 cut(s)	626
HpyCH4V	TGCA	2 cut(s)	311, 638
HpyF10VI	GCNNNNNNNGC	7 cut(s)	159, 260, 404, 425, 472, 521, 596
HpyF3I	CTNAG	5 cut(s)	194, 221, 228, 408, 833
HpySE526I	ACGT	1 cut(s)	626
Hsp92II	CATG	3 cut(s)	371, 402, 848
HspAI	GCGC	1 cut(s)	147
Ksp22I	TGATCA	1 cut(s)	717
Kzo9I	GATC	1 cut(s)	717
LmnI	GCTCC	3 cut(s)	601, 683, 785
LpnPI	CCDG	9 cut(s)	135, 208, 297, 414, 426, 475, 711, 717, 831
Lsp1109I	GCAGC	2 cut(s)	487, 499
LweI	GCATC	1 cut(s)	603
MaeI	CTAG	2 cut(s)	185, 189
MaeII	ACGT	1 cut(s)	626
MaeIII	GTNAC	2 cut(s)	115, 848
MalI	GATC	1 cut(s)	719
MboI	GATC	1 cut(s)	717
MboII	GAAGA	2 cut(s)	4, 166
MfeI	CAATTG	1 cut(s)	255
MhlI	GDGCHC	2 cut(s)	94, 640
MlsI	TGGCCA	1 cut(s)	524
MluCI	AATT	4 cut(s)	96, 255, 689, 853
MluI	ACGCGT	1 cut(s)	527
MluNI	TGGCCA	1 cut(s)	524
MlyI	GAGTC	3 cut(s)	186, 701, 736
MmeI	TCCRAC	1 cut(s)	763
MnlI	CCTC	9 cut(s)	43, 164, 176, 223, 226, 347, 408, 870, 873
Mox20I	TGGCCA	1 cut(s)	524
MroXI	GAANNNNTTC	1 cut(s)	693
MscI	TGGCCA	1 cut(s)	524
MseI	TTAA	6 cut(s)	129, 540, 576, 761, 822, 874
MslI	CAYNNNNRTG	3 cut(s)	366, 503, 737
Msp20I	TGGCCA	1 cut(s)	524
MspI	CCGG	1 cut(s)	462
MspR9I	CCNGG	1 cut(s)	463
MunI	CAATTG	1 cut(s)	255
MvnI	CGCG	2 cut(s)	529, 599
MwoI	GCNNNNNNNGC	7 cut(s)	159, 260, 404, 425, 472, 521, 596
NciI	CCSGG	1 cut(s)	463
NdeI	CATATG	1 cut(s)	646
NdeII	GATC	1 cut(s)	717
NlaIII	CATG	3 cut(s)	371, 402, 848
NlaIV	GGNNCC	2 cut(s)	80, 603
NmuCI	GTSAC	2 cut(s)	115, 848
NspI	RCATGY	1 cut(s)	371
PceI	AGGCCT	1 cut(s)	153
PcsI	WCGNNNNNNNCGW	2 cut(s)	479, 556
PdmI	GAANNNNTTC	1 cut(s)	693
PfeI	GAWTC	1 cut(s)	805
PflMI	CCANNNNNTGG	1 cut(s)	647
PkrI	GCNGC	3 cut(s)	477, 514, 606
PleI	GAGTC	3 cut(s)	186, 701, 736
PpsI	GAGTC	3 cut(s)	186, 701, 736
Psp124BI	GAGCTC	1 cut(s)	94
PspN4I	GGNNCC	2 cut(s)	80, 603
PspPI	GGNCC	1 cut(s)	443
RseI	CAYNNNNRTG	3 cut(s)	366, 503, 737
SacI	GAGCTC	1 cut(s)	94
SaqAI	TTAA	6 cut(s)	129, 540, 576, 761, 822, 874
SatI	GCNGC	3 cut(s)	476, 513, 605
Sau3AI	GATC	1 cut(s)	717
Sau96I	GGNCC	1 cut(s)	443
SchI	GAGTC	3 cut(s)	186, 701, 736
ScrFI	CCNGG	1 cut(s)	463
SduI	GDGCHC	2 cut(s)	94, 640
SfaNI	GCATC	1 cut(s)	603
SfcI	CTRYAG	1 cut(s)	657
SinI	GGWCC	1 cut(s)	443
SmiMI	CAYNNNNRTG	3 cut(s)	366, 503, 737
SmlI	CTYRAG	1 cut(s)	280
SmoI	CTYRAG	1 cut(s)	280
Sse9I	AATT	4 cut(s)	96, 255, 689, 853
SseBI	AGGCCT	1 cut(s)	153
SsiI	CCGC	3 cut(s)	109, 599, 605
SspMI	CTAG	2 cut(s)	185, 189
SstI	GAGCTC	1 cut(s)	94
StuI	AGGCCT	1 cut(s)	153
StyD4I	CCNGG	1 cut(s)	461
TaaI	ACNGT	3 cut(s)	447, 552, 777
TaiI	ACGT	1 cut(s)	629
TaqI	TCGA	1 cut(s)	125
TasI	AATT	4 cut(s)	96, 255, 689, 853
TauI	GCSGC	1 cut(s)	607
TfiI	GAWTC	1 cut(s)	805
Tru1I	TTAA	6 cut(s)	129, 540, 576, 761, 822, 874
Tru9I	TTAA	6 cut(s)	129, 540, 576, 761, 822, 874
TscAI	CASTG	1 cut(s)	333
TseFI	GTSAC	2 cut(s)	115, 848
TseI	GCWGC	2 cut(s)	475, 512
Tsp45I	GTSAC	2 cut(s)	115, 848
TspDTI	ATGAA	4 cut(s)	4, 257, 264, 768
TspRI	CASTG	1 cut(s)	333
Van91I	CCANNNNNTGG	1 cut(s)	647
VneI	GTGCAC	1 cut(s)	636
VpaK11BI	GGWCC	1 cut(s)	443
XagI	CCTNNNNNAGG	1 cut(s)	220
XapI	RAATTY	2 cut(s)	96, 689
XceI	RCATGY	1 cut(s)	371
XmiI	GTMKAC	1 cut(s)	495
XmnI	GAANNNNTTC	1 cut(s)	693
XspI	CTAG	2 cut(s)	185, 189

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.