RLG00000014356

peroxisome organization

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0001014
Physical Location & Seq
Forward (+)
51943204 .. 51947495
4292 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000014356

Sequence Viewer

Length: 1206 bp
ATGTCGCCGGACGGCGACGTCTGCACCTGCTGCGCCGGCGAGAATGGCGGCTCCAACTGTGATCACGCCGAAGATCTGGTGTGCGTGCATTACAGGAAATCCGATCCCTCTCCGTCGTCGTTTTGCTATTCCTCTTCGCTCAAATACGTTCCTGTGCCGTCGAGCGATTCCGAGAAGCTACGGTGGGTCGTGACTGCTTCGATTAAGGGTTTCACCATCGGCACTGGCCTCAAAGGCGGCCTCGCCATCTTCTCCATCCTAGCTAGACTCAGAAAGAGAAAGCTCTTAGCCTCTCTCAGGACTGAGGGTGCGATTACGAATAATGAAGCAATTGTTACTGTTTTGAAGGAGACCTTGAGATATGGTCTGTTTCTTGGGACTTTTGCAGGCACATTTGTTTCAGTGGATGAGATTATTGCTTCTTTGGGAGGCCACCGTAGGACAGCTAAGTGGAGGGCTTTGTTAGCAGGGCTTATAGCAGGACCATCTATGCTTCTTACCGGGCATAACACGCAGCATACGAGCTTGGCTATATACATACTTATGCGTGCTGCCGTGTTGGCCACGCGTTGTGGGATTAAAAGCAAACGGTTTGGTCGTGTTTGTAGACCTCTCACTTGGAAGCACGGTGACATTTTCCTTATGTGTCTCTCCTCTTCGCAAATTCTGTCTGCTTACAAATTGAAGCAGGAGAGTTTGCCTCCATCATATAAATTCTTTCTCAACAAACATGGGGGAAAGGATATCACAATTTTACAAGGTGTTAAAGAGATAGCAAGTGGAGCAAAGCAAGGTTTAATCCCCCTTGCTGTACCACTTTCAAGAAATATCTCAGGTGTTGTAACTGCATTGCTCCGGTGGCCTACAGCTCTGCAAGGAACTATTGATGTCTTGGCATCAAGGCTTTACTTCTATTACTCTCTTAGCTATGAATATACTGGTGATCTCGCAGAAATTAGAGGAAGTACACCATCATATGGGAACTCTGTAGTTGGGTGGGATGTGAGCTATGGAGCTGAATTTGTTCTTGTTCCTGACTCTATACTGATCATTCAAATAGCCACAAAGATGACTCCAACTGATGAACCATTAAAAGGGATTTCACAGTTTGTTGGAGCTTCAACAGGAACTTGGAATCTTAAAATCCCTGTTAAAGACACACTAAGTGATGGTCATGGTCACAATTCTCCTCCTCCAAGAGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TMEM135_C_rich

Protein Analysis

402

Amino Acids

43.29

Weight (kDa)

9.35

Isoelectric Point (pI)

41.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 35
AasI GACNNNNNNGTC 1 cut(s) 17
AatII GACGTC 1 cut(s) 21
Acc36I ACCTGC 1 cut(s) 35
AccB7I CCANNNNNTGG 1 cut(s) 977
AccI GTMKAC 1 cut(s) 607
AccII CGCG 1 cut(s) 568
AciI CCGC 2 cut(s) 48, 237
AclWI GGATC 1 cut(s) 98
AcoI YGGCCR 1 cut(s) 561
AcsI RAATTY 3 cut(s) 663, 713, 1019
AcyI GRCGYC 1 cut(s) 18
AdeI CACNNNGTG 1 cut(s) 1166
AfaI GTAC 2 cut(s) 813, 967
AfiI CCNNNNNNNGG 3 cut(s) 297, 977, 1094
AflIII ACRYGT 1 cut(s) 566
AgsI TTSAA 5 cut(s) 346, 685, 822, 1055, 1122
Alw26I GTCTC 2 cut(s) 344, 653
AlwI GGATC 1 cut(s) 98
AoxI GGCC 5 cut(s) 226, 238, 430, 561, 860
ApeKI GCWGC 3 cut(s) 30, 514, 551
ApoI RAATTY 3 cut(s) 663, 713, 1019
Asp700I GAANNNNTTC 1 cut(s) 1023
AspLEI GCGC 1 cut(s) 35
AspS9I GGNCC 1 cut(s) 482
AsuC2I CCSGG 1 cut(s) 502
AsuHPI GGTGA 3 cut(s) 205, 641, 953
AvaII GGWCC 1 cut(s) 482
BalI TGGCCA 1 cut(s) 563
BbvI GCAGC 3 cut(s) 17, 526, 538
BccI CCATC 7 cut(s) 224, 254, 263, 493, 712, 979, 1163
BceAI ACGGC 3 cut(s) 28, 142, 539
BclI TGATCA 2 cut(s) 61, 1047
BcnI CCSGG 1 cut(s) 502
BcoDI GTCTC 2 cut(s) 344, 653
BfaI CTAG 2 cut(s) 260, 264
BfmI CTRYAG 2 cut(s) 864, 987
BfuAI ACCTGC 1 cut(s) 35
BglI GCCNNNNNGGC 2 cut(s) 234, 560
BglII AGATCT 1 cut(s) 73
BisI GCNGC 5 cut(s) 31, 49, 238, 515, 552
BlsI GCNGC 5 cut(s) 32, 50, 239, 516, 553
Bme1390I CCNGG 1 cut(s) 502
Bme18I GGWCC 1 cut(s) 482
BmgT120I GGNCC 1 cut(s) 482
BmiI GGNNCC 1 cut(s) 52
BmrFI CCNGG 1 cut(s) 502
BmsI GCATC 1 cut(s) 905
BplI GAGNNNNNCTC 2 cut(s) 685, 717
BpuEI CTTGAG 1 cut(s) 376
BpuMI CCSGG 1 cut(s) 502
BsaHI GRCGYC 1 cut(s) 18
BsaI GGTCTC 1 cut(s) 344
BsaWI WCCGGW 1 cut(s) 855
Bsc4I CCNNNNNNNGG 3 cut(s) 297, 977, 1094
Bse118I RCCGGY 1 cut(s) 35
Bse1I ACTGG 2 cut(s) 229, 943
Bse3DI GCAATG 1 cut(s) 848
BseGI GGATG 3 cut(s) 255, 412, 1006
BseLI CCNNNNNNNGG 3 cut(s) 297, 977, 1094
BseMI GCAATG 1 cut(s) 848
BseMII CTCAG 4 cut(s) 283, 294, 310, 846
BseNI ACTGG 2 cut(s) 229, 943
BseRI GAGGAG 3 cut(s) 643, 1179, 1182
BseXI GCAGC 3 cut(s) 17, 526, 538
BsgI GTGCAG 1 cut(s) 7
Bsh1236I CGCG 1 cut(s) 568
BshFI GGCC 5 cut(s) 228, 240, 432, 563, 862
BsiSI CCGG 4 cut(s) 8, 36, 501, 856
BslFI GGGAC 1 cut(s) 391
BslI CCNNNNNNNGG 3 cut(s) 297, 977, 1094
BsmAI GTCTC 2 cut(s) 344, 653
BsmFI GGGAC 1 cut(s) 391
BsnI GGCC 5 cut(s) 228, 240, 432, 563, 862
Bso31I GGTCTC 1 cut(s) 344
Bsp143I GATC 5 cut(s) 61, 73, 103, 943, 1047
BspACI CCGC 2 cut(s) 48, 237
BspANI GGCC 5 cut(s) 228, 240, 432, 563, 862
BspCNI CTCAG 4 cut(s) 282, 295, 309, 845
BspFNI CGCG 1 cut(s) 568
BspLI GGNNCC 1 cut(s) 52
BspMI ACCTGC 1 cut(s) 35
BspPI GGATC 1 cut(s) 98
BspTNI GGTCTC 1 cut(s) 344
BsrDI GCAATG 1 cut(s) 848
BsrFI RCCGGY 1 cut(s) 35
BsrI ACTGG 2 cut(s) 229, 943
BssAI RCCGGY 1 cut(s) 35
BssMI GATC 5 cut(s) 61, 73, 103, 943, 1047
BssNI GRCGYC 1 cut(s) 18
Bst4CI ACNGT 7 cut(s) 59, 183, 340, 437, 591, 629, 1107
Bst6I CTCTTC 2 cut(s) 139, 661
BstACI GRCGYC 1 cut(s) 18
BstAPI GCANNNNNTGC 1 cut(s) 30
BstC8I GCNNGC 4 cut(s) 37, 86, 388, 549
BstDEI CTNAG 8 cut(s) 269, 286, 296, 303, 447, 832, 923, 1163
BstENI CCTNNNNNAGG 1 cut(s) 295
BstF5I GGATG 3 cut(s) 255, 412, 1006
BstFNI CGCG 1 cut(s) 568
BstHHI GCGC 1 cut(s) 35
BstKTI GATC 5 cut(s) 64, 76, 106, 946, 1050
BstMAI GTCTC 2 cut(s) 344, 653
BstMBI GATC 5 cut(s) 61, 73, 103, 943, 1047
BstSCI CCNGG 1 cut(s) 500
BstSFI CTRYAG 2 cut(s) 864, 987
BstUI CGCG 1 cut(s) 568
BstV1I GCAGC 3 cut(s) 17, 526, 538
BstX2I RGATCY 1 cut(s) 73
BstYI RGATCY 1 cut(s) 73
BsuRI GGCC 5 cut(s) 228, 240, 432, 563, 862
BtsCI GGATG 3 cut(s) 255, 412, 1006
BtsIMutI CAGTG 2 cut(s) 222, 408
BveI ACCTGC 1 cut(s) 35
Cac8I GCNNGC 4 cut(s) 37, 86, 388, 549
CfoI GCGC 1 cut(s) 35
Cfr10I RCCGGY 1 cut(s) 35
Cfr13I GGNCC 1 cut(s) 482
Csp6I GTAC 2 cut(s) 812, 966
CviAII CATG 2 cut(s) 731, 1175
CviQI GTAC 2 cut(s) 812, 966
DdeI CTNAG 8 cut(s) 269, 286, 296, 303, 447, 832, 923, 1163
DpnI GATC 5 cut(s) 63, 75, 105, 945, 1049
DpnII GATC 5 cut(s) 61, 73, 103, 943, 1047
DraIII CACNNNGTG 1 cut(s) 1166
DrdI GACNNNNNNGTC 1 cut(s) 17
DseDI GACNNNNNNGTC 1 cut(s) 17
EaeI YGGCCR 1 cut(s) 561
Eam1104I CTCTTC 2 cut(s) 139, 661
EarI CTCTTC 2 cut(s) 139, 661
Eco31I GGTCTC 1 cut(s) 344
Eco32I GATATC 1 cut(s) 745
Eco47I GGWCC 1 cut(s) 482
EcoNI CCTNNNNNAGG 1 cut(s) 295
EcoRV GATATC 1 cut(s) 745
FaeI CATG 2 cut(s) 734, 1178
FalI AAGNNNNNCTT 2 cut(s) 338, 370
FaqI GGGAC 1 cut(s) 391
FatI CATG 2 cut(s) 730, 1174
FauNDI CATATG 1 cut(s) 976
FbaI TGATCA 2 cut(s) 61, 1047
FblI GTMKAC 1 cut(s) 607
Fnu4HI GCNGC 5 cut(s) 31, 49, 238, 515, 552
FokI GGATG 3 cut(s) 242, 419, 1013
Fsp4HI GCNGC 5 cut(s) 31, 49, 238, 515, 552
FspBI CTAG 2 cut(s) 260, 264
GlaI GCGC 1 cut(s) 34
GluI GCNGC 5 cut(s) 31, 49, 238, 515, 552
HaeIII GGCC 5 cut(s) 228, 240, 432, 563, 862
HapII CCGG 4 cut(s) 8, 36, 501, 856
HhaI GCGC 1 cut(s) 35
Hin1I GRCGYC 1 cut(s) 18
Hin1II CATG 2 cut(s) 734, 1178
Hin6I GCGC 1 cut(s) 33
HinP1I GCGC 1 cut(s) 33
HinfI GANTC 5 cut(s) 167, 267, 1037, 1072, 1135
HpaII CCGG 4 cut(s) 8, 36, 501, 856
HphI GGTGA 3 cut(s) 205, 641, 953
Hpy166II GTNNAC 2 cut(s) 608, 968
Hpy188I TCNGA 3 cut(s) 103, 172, 272
Hpy188III TCNNGA 4 cut(s) 190, 298, 822, 1034
Hpy8I GTNNAC 2 cut(s) 608, 968
Hpy99I CGWCG 4 cut(s) 20, 118, 121, 163
HpyAV CCTTC 1 cut(s) 340
HpyCH4III ACNGT 7 cut(s) 59, 183, 340, 437, 591, 629, 1107
HpyCH4IV ACGT 2 cut(s) 18, 147
HpyCH4V TGCA 5 cut(s) 24, 88, 386, 848, 874
HpyF3I CTNAG 8 cut(s) 269, 286, 296, 303, 447, 832, 923, 1163
HpySE526I ACGT 2 cut(s) 18, 147
Hsp92I GRCGYC 1 cut(s) 18
Hsp92II CATG 2 cut(s) 734, 1178
HspAI GCGC 1 cut(s) 33
KroI GCCGGC 1 cut(s) 35
KroNI GCCGGC 1 cut(s) 37
Ksp22I TGATCA 2 cut(s) 61, 1047
Kzo9I GATC 5 cut(s) 61, 73, 103, 943, 1047
LmnI GCTCC 5 cut(s) 56, 782, 858, 1013, 1115
Lsp1109I GCAGC 3 cut(s) 17, 526, 538
LweI GCATC 1 cut(s) 905
MaeI CTAG 2 cut(s) 260, 264
MaeII ACGT 2 cut(s) 18, 147
MaeIII GTNAC 5 cut(s) 190, 334, 629, 841, 1178
MalI GATC 5 cut(s) 63, 75, 105, 945, 1049
MboI GATC 5 cut(s) 61, 73, 103, 943, 1047
MboII GAAGA 4 cut(s) 83, 126, 241, 648
MfeI CAATTG 1 cut(s) 330
MflI RGATCY 1 cut(s) 73
MlsI TGGCCA 1 cut(s) 563
MluCI AATT 8 cut(s) 330, 663, 680, 713, 750, 954, 1019, 1183
MluI ACGCGT 1 cut(s) 566
MluNI TGGCCA 1 cut(s) 563
MlyI GAGTC 3 cut(s) 261, 1031, 1066
MmeI TCCRAC 3 cut(s) 78, 1093, 1100
Mox20I TGGCCA 1 cut(s) 563
MreI CGCCGGCG 1 cut(s) 35
MroNI GCCGGC 1 cut(s) 35
MroXI GAANNNNTTC 1 cut(s) 1023
MscI TGGCCA 1 cut(s) 563
MseI TTAA 8 cut(s) 204, 579, 765, 797, 1091, 1140, 1152, 1204
MslI CAYNNNNRTG 2 cut(s) 542, 1067
Msp20I TGGCCA 1 cut(s) 563
MspI CCGG 4 cut(s) 8, 36, 501, 856
MspR9I CCNGG 1 cut(s) 502
MunI CAATTG 1 cut(s) 330
MvnI CGCG 1 cut(s) 568
NaeI GCCGGC 1 cut(s) 37
NciI CCSGG 1 cut(s) 502
NdeI CATATG 1 cut(s) 976
NdeII GATC 5 cut(s) 61, 73, 103, 943, 1047
NgoMIV GCCGGC 1 cut(s) 35
NlaIII CATG 2 cut(s) 734, 1178
NlaIV GGNNCC 1 cut(s) 52
NmuCI GTSAC 3 cut(s) 190, 629, 1178
PaqCI CACCTGC 1 cut(s) 35
PcsI WCGNNNNNNNCGW 2 cut(s) 518, 595
PdiI GCCGGC 1 cut(s) 37
PdmI GAANNNNTTC 1 cut(s) 1023
PfeI GAWTC 2 cut(s) 167, 1135
PflMI CCANNNNNTGG 1 cut(s) 977
PkrI GCNGC 5 cut(s) 32, 50, 239, 516, 553
PleI GAGTC 3 cut(s) 261, 1031, 1066
PpsI GAGTC 3 cut(s) 261, 1031, 1066
PspN4I GGNNCC 1 cut(s) 52
PspPI GGNCC 1 cut(s) 482
PsuI RGATCY 1 cut(s) 73
RsaI GTAC 2 cut(s) 813, 967
RsaNI GTAC 2 cut(s) 812, 966
RseI CAYNNNNRTG 2 cut(s) 542, 1067
SaqAI TTAA 8 cut(s) 204, 579, 765, 797, 1091, 1140, 1152, 1204
SatI GCNGC 5 cut(s) 31, 49, 238, 515, 552
Sau3AI GATC 5 cut(s) 61, 73, 103, 943, 1047
Sau96I GGNCC 1 cut(s) 482
SchI GAGTC 3 cut(s) 261, 1031, 1066
ScrFI CCNGG 1 cut(s) 502
SfaNI GCATC 1 cut(s) 905
SfcI CTRYAG 2 cut(s) 864, 987
SgrAI CRCCGGYG 1 cut(s) 35
SinI GGWCC 1 cut(s) 482
SmiMI CAYNNNNRTG 2 cut(s) 542, 1067
SmlI CTYRAG 1 cut(s) 355
SmoI CTYRAG 1 cut(s) 355
Sse9I AATT 8 cut(s) 330, 663, 680, 713, 750, 954, 1019, 1183
SsiI CCGC 2 cut(s) 48, 237
SspMI CTAG 2 cut(s) 260, 264
StyD4I CCNGG 1 cut(s) 500
TaaI ACNGT 7 cut(s) 59, 183, 340, 437, 591, 629, 1107
TaiI ACGT 2 cut(s) 21, 150
TaqI TCGA 2 cut(s) 161, 200
TasI AATT 8 cut(s) 330, 663, 680, 713, 750, 954, 1019, 1183
TatI WGTACW 1 cut(s) 965
TauI GCSGC 2 cut(s) 51, 240
TfiI GAWTC 2 cut(s) 167, 1135
Tru1I TTAA 8 cut(s) 204, 579, 765, 797, 1091, 1140, 1152, 1204
Tru9I TTAA 8 cut(s) 204, 579, 765, 797, 1091, 1140, 1152, 1204
TscAI CASTG 2 cut(s) 229, 408
TseFI GTSAC 3 cut(s) 190, 629, 1178
TseI GCWGC 3 cut(s) 30, 514, 551
Tsp45I GTSAC 3 cut(s) 190, 629, 1178
TspDTI ATGAA 3 cut(s) 339, 945, 1098
TspGWI ACGGA 1 cut(s) 102
TspRI CASTG 2 cut(s) 229, 408
Van91I CCANNNNNTGG 1 cut(s) 977
VpaK11BI GGWCC 1 cut(s) 482
XagI CCTNNNNNAGG 1 cut(s) 295
XapI RAATTY 3 cut(s) 663, 713, 1019
XmiI GTMKAC 1 cut(s) 607
XmnI GAANNNNTTC 1 cut(s) 1023
XspI CTAG 2 cut(s) 260, 264
ZraI GACGTC 1 cut(s) 19
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.