Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0001014

Physical Location & Seq

Genomic Coordinates Forward (+)

7845427 .. 7848854

Gene Structure 3428 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000016579

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGTCGCCGGATTGCGACATCTGCACCTGCTGCGCCTGCCAGAATGGCGGCTCTAACGTTCCTGTGCCGTCGAGCGATTCCGAGAAGCTACGGCGGGTCGTGACTGCTTCGATTAAGGGTTTCACCATCGGCGCCGGCCTCAAAGGCGGCCTCGCCGTCTTCTCCATCCTAGCTAGACTCAGAAAGAGAAAGCTCTTAGCCTCTCTCAGGACTGAGGGTGCGATTATGAATAATGAAGCAATTGTTACTGTTTTGAAGGAGACCTTGAGATATGGTCTGTTTCTTGGGACTTTTGCAGGCACATTTGTTTCAGTGGATGAAATTATTGCTTCTTTGGGAGGCCACCGTAGGACAGTTAAGTGGAGGGCTTTGTTAGCAGGGCTTATAGCAGGACCGTCTATGCTTCTTACCGGGCAGAACACGCAGCATACGAGCTTGGCTGTATACATACTTATGCGTGTTGCCGTGTTGGCCATGCGTTGTGGGATTAAAAGCAAACGGTTTGGTCGTGTTTGTAGACCTCTCACTTGGAAGCACGGTGACATTTTCCTTATGTGTCTGTCCTCTTCGCAAATTCTCCCCATAATTAAGGCATATCCGGTGGAGTTGGAAGAAGCTGTAGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TMEM135_C_rich

Protein Analysis

209

Amino Acids

22.48

Weight (kDa)

9.66

Isoelectric Point (pI)

40.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001014)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G34630 AT1G34630 AT1G34630 AT1G34630 AT1G34630
fragaria_vesca	FvH4_5g37331 FvH4_5g37331
malus_domestica	MD08G1182800.v1.1
prunus_persica	Prupe.1G517000_v2.0.a1 Prupe.1G517000_v2.0.a1
pyrus_communis	pycom08g15660
rosa_chinensis	RchiOBHm_Chr3g0470741 RchiOBHm_Chr4g0408951 RchiOBHm_Chr7g0238981
rosa_laevigata	RLG00000000793 RLG00000007867 RLG00000014356 RLG00000015234 RLG00000016579 RLG00000020758
rosa_multiflora	Rmu_co8298683.1_g000001 Rmu_sc0002152.1_g000014 Rmu_sc0004132.1_g000004 Rmu_sc0004879.1_g000005 Rmu_sc0005866.1_g000014 Rmu_sc0010178.1_g000001 Rmu_sc0029797.1_g000001 Rmu_sc0032697.1_g000001 Rmu_sc0034117.1_g000001 Rmu_ssc0000233.1_g000066
rosa_roxburghii	Rroxscaffold_3G00221410 Rroxscaffold_3G00221420
rosa_rugosa	Rorug03G0157600 Rorug05G0148200 Rorug05G0232900 Rorug05G0238700 Rorug07G0324200.1
rosa_samantha	Rh1BG208000 Rh1DG234700 Rh2AG003700 Rh2AG216800 Rh2DG222500 Rh3AG161900 Rh3AG329400 Rh3BG186700 Rh3CG176900 Rh3DG308000 Rh4AG125400 Rh4AG152700 Rh4BG154900 Rh4CG133600 Rh4DG112900 Rh5AG299600 Rh7AG465300 Rh7AG479200 Rh7BG451800 Rh7CG251000 Rh7CG496300 Rh7DG343400 Rh7DG463900
rosa_wichuraiana	Rw7G040000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	35
Acc36I	ACCTGC	1 cut(s)	35
AccB1I	GGYRCC	1 cut(s)	131
AccI	GTMKAC	2 cut(s)	444, 517
AciI	CCGC	3 cut(s)	48, 94, 147
AclI	AACGTT	1 cut(s)	57
AcoI	YGGCCR	1 cut(s)	471
AcsI	RAATTY	1 cut(s)	573
AcyI	GRCGYC	1 cut(s)	132
AfiI	CCNNNNNNNGG	1 cut(s)	207
AgsI	TTSAA	1 cut(s)	256
AluBI	AGCT	5 cut(s)	88, 173, 193, 435, 617
AluI	AGCT	5 cut(s)	88, 173, 193, 435, 617
Alw26I	GTCTC	1 cut(s)	254
AoxI	GGCC	4 cut(s)	136, 148, 340, 471
ApeKI	GCWGC	2 cut(s)	30, 424
ApoI	RAATTY	1 cut(s)	573
AspLEI	GCGC	2 cut(s)	35, 134
AspS9I	GGNCC	1 cut(s)	392
AsuC2I	CCSGG	1 cut(s)	412
AsuHPI	GGTGA	2 cut(s)	115, 551
AvaII	GGWCC	1 cut(s)	392
BalI	TGGCCA	1 cut(s)	473
BanI	GGYRCC	1 cut(s)	131
BbsI	GAAGAC	1 cut(s)	151
BbvI	GCAGC	2 cut(s)	17, 436
BccI	CCATC	2 cut(s)	134, 173
BceAI	ACGGC	4 cut(s)	52, 107, 140, 449
BcnI	CCSGG	1 cut(s)	412
BcoDI	GTCTC	1 cut(s)	254
BfaI	CTAG	2 cut(s)	170, 174
BfmI	CTRYAG	1 cut(s)	618
BfoI	RGCGCY	1 cut(s)	135
BfuAI	ACCTGC	1 cut(s)	35
BglI	GCCNNNNNGGC	3 cut(s)	45, 144, 470
BisI	GCNGC	4 cut(s)	31, 49, 148, 425
BlsI	GCNGC	4 cut(s)	32, 50, 149, 426
Bme1390I	CCNGG	1 cut(s)	412
Bme18I	GGWCC	1 cut(s)	392
BmgT120I	GGNCC	1 cut(s)	392
BmiI	GGNNCC	1 cut(s)	133
BmrFI	CCNGG	1 cut(s)	412
BpiI	GAAGAC	1 cut(s)	151
BpuEI	CTTGAG	1 cut(s)	286
BpuMI	CCSGG	1 cut(s)	412
BsaHI	GRCGYC	1 cut(s)	132
BsaI	GGTCTC	1 cut(s)	254
BsaWI	WCCGGW	1 cut(s)	598
Bsc4I	CCNNNNNNNGG	1 cut(s)	207
Bse118I	RCCGGY	1 cut(s)	134
BseGI	GGATG	2 cut(s)	165, 322
BseLI	CCNNNNNNNGG	1 cut(s)	207
BseMII	CTCAG	3 cut(s)	193, 204, 220
BseXI	GCAGC	2 cut(s)	17, 436
BsgI	GTGCAG	1 cut(s)	7
BshFI	GGCC	4 cut(s)	138, 150, 342, 473
BshNI	GGYRCC	1 cut(s)	131
BsiSI	CCGG	4 cut(s)	8, 135, 411, 599
BslFI	GGGAC	1 cut(s)	301
BslI	CCNNNNNNNGG	1 cut(s)	207
BsmAI	GTCTC	1 cut(s)	254
BsmFI	GGGAC	1 cut(s)	301
BsnI	GGCC	4 cut(s)	138, 150, 342, 473
Bso31I	GGTCTC	1 cut(s)	254
BspACI	CCGC	3 cut(s)	48, 94, 147
BspANI	GGCC	4 cut(s)	138, 150, 342, 473
BspCNI	CTCAG	3 cut(s)	192, 205, 219
BspLI	GGNNCC	1 cut(s)	133
BspMI	ACCTGC	1 cut(s)	35
BspT107I	GGYRCC	1 cut(s)	131
BspTNI	GGTCTC	1 cut(s)	254
BsrFI	RCCGGY	1 cut(s)	134
BssAI	RCCGGY	1 cut(s)	134
BssNAI	GTATAC	1 cut(s)	445
BssNI	GRCGYC	1 cut(s)	132
Bst1107I	GTATAC	1 cut(s)	445
Bst4CI	ACNGT	6 cut(s)	250, 347, 355, 396, 501, 539
Bst6I	CTCTTC	1 cut(s)	571
BstACI	GRCGYC	1 cut(s)	132
BstAPI	GCANNNNNTGC	1 cut(s)	30
BstC8I	GCNNGC	3 cut(s)	37, 136, 298
BstDEI	CTNAG	4 cut(s)	179, 196, 206, 213
BstENI	CCTNNNNNAGG	1 cut(s)	205
BstF5I	GGATG	2 cut(s)	165, 322
BstH2I	RGCGCY	1 cut(s)	135
BstHHI	GCGC	2 cut(s)	35, 134
BstMAI	GTCTC	1 cut(s)	254
BstMWI	GCNNNNNNNGC	8 cut(s)	21, 30, 36, 45, 144, 374, 421, 470
BstSCI	CCNGG	1 cut(s)	410
BstSFI	CTRYAG	1 cut(s)	618
BstV1I	GCAGC	2 cut(s)	17, 436
BstV2I	GAAGAC	1 cut(s)	151
BstZ17I	GTATAC	1 cut(s)	445
BsuRI	GGCC	4 cut(s)	138, 150, 342, 473
BtsCI	GGATG	2 cut(s)	165, 322
BtsIMutI	CAGTG	1 cut(s)	318
BveI	ACCTGC	1 cut(s)	35
Cac8I	GCNNGC	3 cut(s)	37, 136, 298
CfoI	GCGC	2 cut(s)	35, 134
Cfr10I	RCCGGY	1 cut(s)	134
Cfr13I	GGNCC	1 cut(s)	392
CviAII	CATG	1 cut(s)	475
DdeI	CTNAG	4 cut(s)	179, 196, 206, 213
DinI	GGCGCC	1 cut(s)	133
EaeI	YGGCCR	1 cut(s)	471
Eam1104I	CTCTTC	1 cut(s)	571
EarI	CTCTTC	1 cut(s)	571
Eco31I	GGTCTC	1 cut(s)	254
Eco47I	GGWCC	1 cut(s)	392
EcoNI	CCTNNNNNAGG	1 cut(s)	205
EgeI	GGCGCC	1 cut(s)	133
EheI	GGCGCC	1 cut(s)	133
FaeI	CATG	1 cut(s)	478
FalI	AAGNNNNNCTT	2 cut(s)	248, 280
FaqI	GGGAC	1 cut(s)	301
FatI	CATG	1 cut(s)	474
FauI	CCCGC	1 cut(s)	87
FblI	GTMKAC	2 cut(s)	444, 517
Fnu4HI	GCNGC	4 cut(s)	31, 49, 148, 425
FokI	GGATG	2 cut(s)	152, 329
Fsp4HI	GCNGC	4 cut(s)	31, 49, 148, 425
FspBI	CTAG	2 cut(s)	170, 174
GlaI	GCGC	2 cut(s)	34, 133
GluI	GCNGC	4 cut(s)	31, 49, 148, 425
HaeII	RGCGCY	1 cut(s)	135
HaeIII	GGCC	4 cut(s)	138, 150, 342, 473
HapII	CCGG	4 cut(s)	8, 135, 411, 599
HhaI	GCGC	2 cut(s)	35, 134
Hin1I	GRCGYC	1 cut(s)	132
Hin1II	CATG	1 cut(s)	478
Hin6I	GCGC	2 cut(s)	33, 132
HinP1I	GCGC	2 cut(s)	33, 132
HinfI	GANTC	2 cut(s)	77, 177
HpaII	CCGG	4 cut(s)	8, 135, 411, 599
HphI	GGTGA	2 cut(s)	115, 551
Hpy166II	GTNNAC	2 cut(s)	445, 518
Hpy188I	TCNGA	2 cut(s)	82, 182
Hpy188III	TCNNGA	2 cut(s)	100, 208
Hpy8I	GTNNAC	2 cut(s)	445, 518
Hpy99I	CGWCG	1 cut(s)	73
HpyAV	CCTTC	1 cut(s)	250
HpyCH4III	ACNGT	6 cut(s)	250, 347, 355, 396, 501, 539
HpyCH4IV	ACGT	1 cut(s)	57
HpyCH4V	TGCA	2 cut(s)	24, 296
HpyF10VI	GCNNNNNNNGC	8 cut(s)	21, 30, 36, 45, 144, 374, 421, 470
HpyF3I	CTNAG	4 cut(s)	179, 196, 206, 213
HpySE526I	ACGT	1 cut(s)	57
Hsp92I	GRCGYC	1 cut(s)	132
Hsp92II	CATG	1 cut(s)	478
HspAI	GCGC	2 cut(s)	33, 132
KasI	GGCGCC	1 cut(s)	131
KroI	GCCGGC	1 cut(s)	134
KroNI	GCCGGC	1 cut(s)	136
Lsp1109I	GCAGC	2 cut(s)	17, 436
MaeI	CTAG	2 cut(s)	170, 174
MaeII	ACGT	1 cut(s)	57
MaeIII	GTNAC	3 cut(s)	100, 244, 539
MboII	GAAGA	3 cut(s)	151, 558, 623
MfeI	CAATTG	1 cut(s)	240
MlsI	TGGCCA	1 cut(s)	473
MluCI	AATT	4 cut(s)	240, 321, 573, 585
MluNI	TGGCCA	1 cut(s)	473
Mly113I	GGCGCC	1 cut(s)	132
MlyI	GAGTC	1 cut(s)	171
MmeI	TCCRAC	1 cut(s)	588
MnlI	CCTC	8 cut(s)	149, 161, 208, 211, 332, 357, 531, 574
Mox20I	TGGCCA	1 cut(s)	473
MroNI	GCCGGC	1 cut(s)	134
MscI	TGGCCA	1 cut(s)	473
MseI	TTAA	4 cut(s)	114, 357, 489, 588
MslI	CAYNNNNRTG	1 cut(s)	452
Msp20I	TGGCCA	1 cut(s)	473
MspI	CCGG	4 cut(s)	8, 135, 411, 599
MspR9I	CCNGG	1 cut(s)	412
MunI	CAATTG	1 cut(s)	240
MwoI	GCNNNNNNNGC	8 cut(s)	21, 30, 36, 45, 144, 374, 421, 470
NaeI	GCCGGC	1 cut(s)	136
NarI	GGCGCC	1 cut(s)	132
NciI	CCSGG	1 cut(s)	412
NgoMIV	GCCGGC	1 cut(s)	134
NlaIII	CATG	1 cut(s)	478
NlaIV	GGNNCC	1 cut(s)	133
NmuCI	GTSAC	2 cut(s)	100, 539
PaqCI	CACCTGC	1 cut(s)	35
PcsI	WCGNNNNNNNCGW	2 cut(s)	428, 505
PdiI	GCCGGC	1 cut(s)	136
PfeI	GAWTC	1 cut(s)	77
PkrI	GCNGC	4 cut(s)	32, 50, 149, 426
PleI	GAGTC	1 cut(s)	171
PluTI	GGCGCC	1 cut(s)	135
PpsI	GAGTC	1 cut(s)	171
Psp1406I	AACGTT	1 cut(s)	57
PspN4I	GGNNCC	1 cut(s)	133
PspPI	GGNCC	1 cut(s)	392
RseI	CAYNNNNRTG	1 cut(s)	452
SaqAI	TTAA	4 cut(s)	114, 357, 489, 588
SatI	GCNGC	4 cut(s)	31, 49, 148, 425
Sau96I	GGNCC	1 cut(s)	392
SchI	GAGTC	1 cut(s)	171
ScrFI	CCNGG	1 cut(s)	412
SetI	ASST	9 cut(s)	29, 60, 90, 175, 195, 266, 437, 523, 619
SfcI	CTRYAG	1 cut(s)	618
SfoI	GGCGCC	1 cut(s)	133
SinI	GGWCC	1 cut(s)	392
SmiMI	CAYNNNNRTG	1 cut(s)	452
SmlI	CTYRAG	1 cut(s)	265
SmoI	CTYRAG	1 cut(s)	265
Sse9I	AATT	4 cut(s)	240, 321, 573, 585
SsiI	CCGC	3 cut(s)	48, 94, 147
SspDI	GGCGCC	1 cut(s)	131
SspMI	CTAG	2 cut(s)	170, 174
StyD4I	CCNGG	1 cut(s)	410
TaaI	ACNGT	6 cut(s)	250, 347, 355, 396, 501, 539
TaiI	ACGT	1 cut(s)	60
TaqI	TCGA	2 cut(s)	71, 110
TasI	AATT	4 cut(s)	240, 321, 573, 585
TauI	GCSGC	2 cut(s)	51, 150
TfiI	GAWTC	1 cut(s)	77
Tru1I	TTAA	4 cut(s)	114, 357, 489, 588
Tru9I	TTAA	4 cut(s)	114, 357, 489, 588
TscAI	CASTG	1 cut(s)	318
TseFI	GTSAC	2 cut(s)	100, 539
TseI	GCWGC	2 cut(s)	30, 424
Tsp45I	GTSAC	2 cut(s)	100, 539
TspDTI	ATGAA	3 cut(s)	242, 249, 333
TspRI	CASTG	1 cut(s)	318
VpaK11BI	GGWCC	1 cut(s)	392
XagI	CCTNNNNNAGG	1 cut(s)	205
XapI	RAATTY	1 cut(s)	573
XmiI	GTMKAC	2 cut(s)	444, 517
XspI	CTAG	2 cut(s)	170, 174

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.