Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0001014

Physical Location & Seq

Genomic Coordinates Forward (+)

23838335 .. 23838967

Gene Structure 633 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG251000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGTCGCCGGACTGCGACGTCTGCACCTGCTGCGCTTGCAAGAATGGCGGCTCCAACGGTGATCACGCCGAAGATCTGGTGTGTGCGCATTACTGGAAATCCGATCCCTCTCCGTCGTCGTTTTGCTATTCCTCTTCAGTCAAATACGTTCCTGTGCCGTCGAGCGATTCCGAGAAGCTACGGCGGGTCGTGACTGCTTCAATTAAGGGTTTCACCATCGGCGCCGGCCTCAAAGGCTGCCTCGCCGTCTTCTCCATCCTAGCTAAACTCAGAAAGAGAAAGCTCTTAGCCTCTCTCAGGACTGAGGGTGCGATTATGAATAATGAAGCAATTGTTGCTGTTTTGAACGAGACCTTGAGATATGGTCTGTTTCTTGGGACTTTTGCAGGCACATTTGTTTCAGTGGATGAGATTATTGCTTCTTTGGGAGGCCACCGTAGGCATGTTCCTTGTTCTTTTATATTCAGCTTCGCATGGTCTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TMEM135_C_rich

Protein Analysis

161

Amino Acids

17.31

Weight (kDa)

8.59

Isoelectric Point (pI)

53.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001014)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G34630 AT1G34630 AT1G34630 AT1G34630 AT1G34630
fragaria_vesca	FvH4_5g37331 FvH4_5g37331
malus_domestica	MD08G1182800.v1.1
prunus_persica	Prupe.1G517000_v2.0.a1 Prupe.1G517000_v2.0.a1
pyrus_communis	pycom08g15660
rosa_chinensis	RchiOBHm_Chr3g0470741 RchiOBHm_Chr4g0408951 RchiOBHm_Chr7g0238981
rosa_laevigata	RLG00000000793 RLG00000007867 RLG00000014356 RLG00000015234 RLG00000016579 RLG00000020758
rosa_multiflora	Rmu_co8298683.1_g000001 Rmu_sc0002152.1_g000014 Rmu_sc0004132.1_g000004 Rmu_sc0004879.1_g000005 Rmu_sc0005866.1_g000014 Rmu_sc0010178.1_g000001 Rmu_sc0029797.1_g000001 Rmu_sc0032697.1_g000001 Rmu_sc0034117.1_g000001 Rmu_ssc0000233.1_g000066
rosa_roxburghii	Rroxscaffold_3G00221410 Rroxscaffold_3G00221420
rosa_rugosa	Rorug03G0157600 Rorug05G0148200 Rorug05G0232900 Rorug05G0238700 Rorug07G0324200.1
rosa_samantha	Rh1BG208000 Rh1DG234700 Rh2AG003700 Rh2AG216800 Rh2DG222500 Rh3AG161900 Rh3AG329400 Rh3BG186700 Rh3CG176900 Rh3DG308000 Rh4AG125400 Rh4AG152700 Rh4BG154900 Rh4CG133600 Rh4DG112900 Rh5AG299600 Rh7AG465300 Rh7AG479200 Rh7BG451800 Rh7CG251000 Rh7CG496300 Rh7DG343400 Rh7DG463900
rosa_wichuraiana	Rw7G040000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	35
AasI	GACNNNNNNGTC	1 cut(s)	17
AatII	GACGTC	1 cut(s)	21
Acc16I	TGCGCA	1 cut(s)	87
Acc36I	ACCTGC	1 cut(s)	35
AccB1I	GGYRCC	1 cut(s)	221
AciI	CCGC	2 cut(s)	48, 184
AclWI	GGATC	1 cut(s)	98
AcuI	CTGAAG	1 cut(s)	120
AcyI	GRCGYC	2 cut(s)	18, 222
AfiI	CCNNNNNNNGG	1 cut(s)	297
AgsI	TTSAA	2 cut(s)	201, 346
AluBI	AGCT	4 cut(s)	178, 263, 283, 468
AluI	AGCT	4 cut(s)	178, 263, 283, 468
Alw26I	GTCTC	1 cut(s)	344
AlwI	GGATC	1 cut(s)	98
AoxI	GGCC	2 cut(s)	226, 430
ApeKI	GCWGC	2 cut(s)	30, 237
AspLEI	GCGC	3 cut(s)	35, 88, 224
AsuHPI	GGTGA	2 cut(s)	71, 205
BanI	GGYRCC	1 cut(s)	221
BbsI	GAAGAC	1 cut(s)	241
BbvI	GCAGC	2 cut(s)	17, 224
BccI	CCATC	2 cut(s)	224, 263
BceAI	ACGGC	3 cut(s)	142, 197, 230
BclI	TGATCA	1 cut(s)	61
BcoDI	GTCTC	1 cut(s)	344
BfaI	CTAG	1 cut(s)	260
BfoI	RGCGCY	1 cut(s)	225
BfuAI	ACCTGC	1 cut(s)	35
BglI	GCCNNNNNGGC	1 cut(s)	234
BglII	AGATCT	1 cut(s)	73
BisI	GCNGC	3 cut(s)	31, 49, 238
BlsI	GCNGC	3 cut(s)	32, 50, 239
BmiI	GGNNCC	2 cut(s)	52, 223
BpiI	GAAGAC	1 cut(s)	241
BpuEI	CTTGAG	1 cut(s)	376
BsaHI	GRCGYC	2 cut(s)	18, 222
BsaI	GGTCTC	1 cut(s)	344
Bsc4I	CCNNNNNNNGG	1 cut(s)	297
Bse118I	RCCGGY	1 cut(s)	224
Bse1I	ACTGG	1 cut(s)	98
BseGI	GGATG	2 cut(s)	255, 412
BseLI	CCNNNNNNNGG	1 cut(s)	297
BseMII	CTCAG	3 cut(s)	283, 294, 310
BseNI	ACTGG	1 cut(s)	98
BseXI	GCAGC	2 cut(s)	17, 224
BsgI	GTGCAG	1 cut(s)	7
BshFI	GGCC	2 cut(s)	228, 432
BshNI	GGYRCC	1 cut(s)	221
BsiSI	CCGG	2 cut(s)	8, 225
BslFI	GGGAC	1 cut(s)	391
BslI	CCNNNNNNNGG	1 cut(s)	297
BsmAI	GTCTC	1 cut(s)	344
BsmFI	GGGAC	1 cut(s)	391
BsnI	GGCC	2 cut(s)	228, 432
Bso31I	GGTCTC	1 cut(s)	344
Bsp143I	GATC	3 cut(s)	61, 73, 103
BspACI	CCGC	2 cut(s)	48, 184
BspANI	GGCC	2 cut(s)	228, 432
BspCNI	CTCAG	3 cut(s)	282, 295, 309
BspLI	GGNNCC	2 cut(s)	52, 223
BspMI	ACCTGC	1 cut(s)	35
BspPI	GGATC	1 cut(s)	98
BspT107I	GGYRCC	1 cut(s)	221
BspTNI	GGTCTC	1 cut(s)	344
BsrFI	RCCGGY	1 cut(s)	224
BsrI	ACTGG	1 cut(s)	98
BssAI	RCCGGY	1 cut(s)	224
BssMI	GATC	3 cut(s)	61, 73, 103
BssNI	GRCGYC	2 cut(s)	18, 222
Bst4CI	ACNGT	2 cut(s)	59, 437
Bst6I	CTCTTC	1 cut(s)	139
BstACI	GRCGYC	2 cut(s)	18, 222
BstAPI	GCANNNNNTGC	2 cut(s)	30, 335
BstC8I	GCNNGC	3 cut(s)	37, 226, 388
BstDEI	CTNAG	4 cut(s)	269, 286, 296, 303
BstENI	CCTNNNNNAGG	1 cut(s)	295
BstF5I	GGATG	2 cut(s)	255, 412
BstH2I	RGCGCY	1 cut(s)	225
BstHHI	GCGC	3 cut(s)	35, 88, 224
BstKTI	GATC	3 cut(s)	64, 76, 106
BstMAI	GTCTC	1 cut(s)	344
BstMBI	GATC	3 cut(s)	61, 73, 103
BstMWI	GCNNNNNNNGC	6 cut(s)	21, 30, 36, 45, 234, 335
BstNSI	RCATGY	1 cut(s)	446
BstV1I	GCAGC	2 cut(s)	17, 224
BstV2I	GAAGAC	1 cut(s)	241
BstX2I	RGATCY	1 cut(s)	73
BstYI	RGATCY	1 cut(s)	73
BsuRI	GGCC	2 cut(s)	228, 432
BtsCI	GGATG	2 cut(s)	255, 412
BtsIMutI	CAGTG	1 cut(s)	408
BveI	ACCTGC	1 cut(s)	35
Cac8I	GCNNGC	3 cut(s)	37, 226, 388
CfoI	GCGC	3 cut(s)	35, 88, 224
Cfr10I	RCCGGY	1 cut(s)	224
CviAII	CATG	2 cut(s)	443, 474
CviJI	RGCY	9 cut(s)	51, 178, 228, 237, 263, 283, 290, 432, 468
CviKI_1	RGCY	9 cut(s)	51, 178, 228, 237, 263, 283, 290, 432, 468
DdeI	CTNAG	4 cut(s)	269, 286, 296, 303
DinI	GGCGCC	1 cut(s)	223
DpnI	GATC	3 cut(s)	63, 75, 105
DpnII	GATC	3 cut(s)	61, 73, 103
DrdI	GACNNNNNNGTC	1 cut(s)	17
DseDI	GACNNNNNNGTC	1 cut(s)	17
Eam1104I	CTCTTC	1 cut(s)	139
EarI	CTCTTC	1 cut(s)	139
Eco31I	GGTCTC	1 cut(s)	344
Eco57I	CTGAAG	1 cut(s)	120
EcoNI	CCTNNNNNAGG	1 cut(s)	295
EgeI	GGCGCC	1 cut(s)	223
EheI	GGCGCC	1 cut(s)	223
FaeI	CATG	2 cut(s)	446, 477
FaiI	YATR	5 cut(s)	317, 363, 444, 461, 475
FaqI	GGGAC	1 cut(s)	391
FatI	CATG	2 cut(s)	442, 473
FauI	CCCGC	1 cut(s)	177
FbaI	TGATCA	1 cut(s)	61
Fnu4HI	GCNGC	3 cut(s)	31, 49, 238
FokI	GGATG	2 cut(s)	242, 419
Fsp4HI	GCNGC	3 cut(s)	31, 49, 238
FspAI	RTGCGCAY	1 cut(s)	87
FspBI	CTAG	1 cut(s)	260
FspI	TGCGCA	1 cut(s)	87
GlaI	GCGC	3 cut(s)	34, 87, 223
GluI	GCNGC	3 cut(s)	31, 49, 238
HaeII	RGCGCY	1 cut(s)	225
HaeIII	GGCC	2 cut(s)	228, 432
HapII	CCGG	2 cut(s)	8, 225
HhaI	GCGC	3 cut(s)	35, 88, 224
Hin1I	GRCGYC	2 cut(s)	18, 222
Hin1II	CATG	2 cut(s)	446, 477
Hin6I	GCGC	3 cut(s)	33, 86, 222
HinP1I	GCGC	3 cut(s)	33, 86, 222
HinfI	GANTC	1 cut(s)	167
HpaII	CCGG	2 cut(s)	8, 225
HphI	GGTGA	2 cut(s)	71, 205
Hpy188I	TCNGA	3 cut(s)	103, 172, 272
Hpy188III	TCNNGA	2 cut(s)	190, 298
Hpy99I	CGWCG	4 cut(s)	20, 118, 121, 163
HpyCH4III	ACNGT	2 cut(s)	59, 437
HpyCH4IV	ACGT	2 cut(s)	18, 147
HpyCH4V	TGCA	3 cut(s)	24, 39, 386
HpyF10VI	GCNNNNNNNGC	6 cut(s)	21, 30, 36, 45, 234, 335
HpyF3I	CTNAG	4 cut(s)	269, 286, 296, 303
HpySE526I	ACGT	2 cut(s)	18, 147
Hsp92I	GRCGYC	2 cut(s)	18, 222
Hsp92II	CATG	2 cut(s)	446, 477
HspAI	GCGC	3 cut(s)	33, 86, 222
KasI	GGCGCC	1 cut(s)	221
KroI	GCCGGC	1 cut(s)	224
KroNI	GCCGGC	1 cut(s)	226
Ksp22I	TGATCA	1 cut(s)	61
Kzo9I	GATC	3 cut(s)	61, 73, 103
LmnI	GCTCC	1 cut(s)	56
LpnPI	CCDG	8 cut(s)	21, 40, 62, 79, 165, 238, 283, 372
Lsp1109I	GCAGC	2 cut(s)	17, 224
MaeI	CTAG	1 cut(s)	260
MaeII	ACGT	2 cut(s)	18, 147
MaeIII	GTNAC	1 cut(s)	190
MalI	GATC	3 cut(s)	63, 75, 105
MboI	GATC	3 cut(s)	61, 73, 103
MboII	GAAGA	3 cut(s)	83, 126, 241
MfeI	CAATTG	1 cut(s)	330
MflI	RGATCY	1 cut(s)	73
MluCI	AATT	2 cut(s)	201, 330
Mly113I	GGCGCC	1 cut(s)	222
MmeI	TCCRAC	1 cut(s)	78
MnlI	CCTC	7 cut(s)	118, 142, 239, 251, 298, 301, 422
MroNI	GCCGGC	1 cut(s)	224
MseI	TTAA	1 cut(s)	204
MspI	CCGG	2 cut(s)	8, 225
MunI	CAATTG	1 cut(s)	330
MwoI	GCNNNNNNNGC	6 cut(s)	21, 30, 36, 45, 234, 335
NaeI	GCCGGC	1 cut(s)	226
NarI	GGCGCC	1 cut(s)	222
NdeII	GATC	3 cut(s)	61, 73, 103
NgoMIV	GCCGGC	1 cut(s)	224
NlaIII	CATG	2 cut(s)	446, 477
NlaIV	GGNNCC	2 cut(s)	52, 223
NmuCI	GTSAC	1 cut(s)	190
NsbI	TGCGCA	1 cut(s)	87
NspI	RCATGY	1 cut(s)	446
PaqCI	CACCTGC	1 cut(s)	35
PdiI	GCCGGC	1 cut(s)	226
PfeI	GAWTC	1 cut(s)	167
PkrI	GCNGC	3 cut(s)	32, 50, 239
PluTI	GGCGCC	1 cut(s)	225
PspN4I	GGNNCC	2 cut(s)	52, 223
PsuI	RGATCY	1 cut(s)	73
SaqAI	TTAA	1 cut(s)	204
SatI	GCNGC	3 cut(s)	31, 49, 238
Sau3AI	GATC	3 cut(s)	61, 73, 103
SetI	ASST	8 cut(s)	21, 29, 150, 180, 265, 285, 356, 470
SfoI	GGCGCC	1 cut(s)	223
SmlI	CTYRAG	1 cut(s)	355
SmoI	CTYRAG	1 cut(s)	355
Sse9I	AATT	2 cut(s)	201, 330
SsiI	CCGC	2 cut(s)	48, 184
SspDI	GGCGCC	1 cut(s)	221
SspMI	CTAG	1 cut(s)	260
TaaI	ACNGT	2 cut(s)	59, 437
TaiI	ACGT	2 cut(s)	21, 150
TaqI	TCGA	1 cut(s)	161
TasI	AATT	2 cut(s)	201, 330
TauI	GCSGC	1 cut(s)	51
TfiI	GAWTC	1 cut(s)	167
Tru1I	TTAA	1 cut(s)	204
Tru9I	TTAA	1 cut(s)	204
TscAI	CASTG	1 cut(s)	408
TseFI	GTSAC	1 cut(s)	190
TseI	GCWGC	2 cut(s)	30, 237
Tsp45I	GTSAC	1 cut(s)	190
TspDTI	ATGAA	2 cut(s)	332, 339
TspGWI	ACGGA	1 cut(s)	102
TspRI	CASTG	1 cut(s)	408
XagI	CCTNNNNNAGG	1 cut(s)	295
XceI	RCATGY	1 cut(s)	446
XspI	CTAG	1 cut(s)	260
ZraI	GACGTC	1 cut(s)	19

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.