Rh7DG463900

peroxisome organization

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0001014
Physical Location & Seq
Reverse (-)
66093882 .. 66097811
3930 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG463900.1

Sequence Viewer

Length: 1191 bp
ATGTCGCCGGACGGCGACGTCTGCACCTGCTCCGCCGGCGAGAATGGCGGCTCCAACGGTGATCACGCCGAAGATCTGGTGTGCGCGCATTGCAGGAAATCCGATCCCTCTCCGTCGTCGTTTTGCTATTCCTCTTCGCTCAAATACGTTCCTGTGCCGTTGAGCGATTCCGAGAAGCTACGGCGGGTCGTGACTGCTTCGATTAAGGGCTTCACCATCGGCGCCGGCCTCAAAGGCGGCCTCGCCGTCTTCTCCATCCTAGTTAGACTCAGAAAGAGAAAGCTCTTAGCCTCTCTCAGGACTGAGGGTATGATTACGAATAATGAAGCAATTGTTACTGCTTTGAAGGAGACCTTGAGATATGGTCTGTTTCTTGGGACTTTTGCAGGCACATTTGTTTCAGTGGATGAGATTATTGCTTCTTTGGGAGGCCACCGTAGGACAGCTAAGTGGAGGGCTTTGTTAGCAGGGCTTATAGCAGGACCGTCTATGCTTCTTACCGGGCATAACACACAGCACACGAGCTTGGCCGTATACATACTTATGCGTGCTGCCGTGTTGGCCACGCGTTGTGGGATTAAAAGCAAACGGTTTGGTCGTGTTTGTAGACCTCTCACTTGGAAGCACGGTGACATTTTCCTTATGTGTCTCTCCTCTTCGCAAATCCTGTCTGCTTACATATTGAAGCAGGAGAGTTTGCCTCTATCATATAAATCCTTTCTCAACAAACATGGGGGAAAAGATATCACAATTTTGCAAGGTGTTAAAGAGATTGCAAGTGGCTTACCGTTTACTAATTTGGAAGCAATAGAAAGATACTACAAATCTGTGGGAACAAATATTAAACTAGATCCAGCCATGAAAGTTCCCTGCACGATTGTACACGGAGGTCAGTCATGTAGCGGGCATATTATCTCTTTCCTAATTCAAGCCTACAAGAGAGCATTACCGGTTTATCTTCCGGTATATCTGATTCCAGCGCTTATAGTTCATCGGCAAGACCTCTTGAAAAGGCATTACACTATACTACTAAAGGGTCTTCTTGGCACTGCAAGATCAAGCTTGTTTCTTTCCGTATATTGCGCATCTGCCTGGTCAGCGGCTTCTTTTATTTTATATCTAACTCTGGTGGTGCCATTTATGCTTTATGCGAACCTGCTATTAGAATATTGTTTTCACATTATTGTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TMEM135_C_rich

Protein Analysis

396

Amino Acids

43.24

Weight (kDa)

9.57

Isoelectric Point (pI)

45.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 35
AasI GACNNNNNNGTC 1 cut(s) 17
AatII GACGTC 1 cut(s) 21
Acc16I TGCGCA 1 cut(s) 1084
Acc36I ACCTGC 2 cut(s) 35, 1164
AccB1I GGYRCC 2 cut(s) 221, 1132
AccI GTMKAC 2 cut(s) 534, 607
AccII CGCG 2 cut(s) 86, 568
AciI CCGC 6 cut(s) 33, 48, 184, 237, 903, 1100
AclWI GGATC 2 cut(s) 98, 845
AcoI YGGCCR 2 cut(s) 528, 561
AcyI GRCGYC 2 cut(s) 18, 222
AfaI GTAC 1 cut(s) 882
AfeI AGCGCT 1 cut(s) 981
AfiI CCNNNNNNNGG 1 cut(s) 297
AflIII ACRYGT 1 cut(s) 566
AgeI ACCGGT 1 cut(s) 949
AgsI TTSAA 4 cut(s) 346, 685, 929, 1009
AjnI CCWGG 1 cut(s) 1091
AluBI AGCT 5 cut(s) 178, 283, 446, 525, 1062
AluI AGCT 5 cut(s) 178, 283, 446, 525, 1062
Alw26I GTCTC 2 cut(s) 344, 653
AlwI GGATC 2 cut(s) 98, 845
Aor51HI AGCGCT 1 cut(s) 981
AoxI GGCC 5 cut(s) 226, 238, 430, 528, 561
ApeKI GCWGC 1 cut(s) 551
AsiGI ACCGGT 1 cut(s) 949
AspLEI GCGC 5 cut(s) 86, 88, 224, 982, 1085
AspS9I GGNCC 1 cut(s) 482
AsuC2I CCSGG 1 cut(s) 502
AsuHPI GGTGA 3 cut(s) 71, 205, 641
AvaII GGWCC 1 cut(s) 482
BalI TGGCCA 1 cut(s) 563
BanI GGYRCC 2 cut(s) 221, 1132
BauI CACGAG 1 cut(s) 520
BbsI GAAGAC 2 cut(s) 241, 1031
BbvI GCAGC 1 cut(s) 538
BccI CCATC 2 cut(s) 224, 263
BceAI ACGGC 6 cut(s) 28, 142, 197, 230, 515, 539
BciT130I CCWGG 1 cut(s) 1093
BclI TGATCA 1 cut(s) 61
BcnI CCSGG 1 cut(s) 502
BcoDI GTCTC 2 cut(s) 344, 653
BfaI CTAG 2 cut(s) 260, 848
BfoI RGCGCY 2 cut(s) 225, 983
BfuAI ACCTGC 2 cut(s) 35, 1164
BglI GCCNNNNNGGC 2 cut(s) 234, 560
BglII AGATCT 1 cut(s) 73
BisI GCNGC 4 cut(s) 49, 238, 552, 1101
BlsI GCNGC 4 cut(s) 50, 239, 553, 1102
Bme1390I CCNGG 2 cut(s) 502, 1093
Bme18I GGWCC 1 cut(s) 482
BmgT120I GGNCC 1 cut(s) 482
BmiI GGNNCC 3 cut(s) 52, 223, 1134
BmrFI CCNGG 2 cut(s) 502, 1093
BmsI GCATC 1 cut(s) 1094
BpiI GAAGAC 2 cut(s) 241, 1031
BplI GAGNNNNNCTC 2 cut(s) 685, 717
BpuEI CTTGAG 1 cut(s) 376
BpuMI CCSGG 1 cut(s) 502
BsaHI GRCGYC 2 cut(s) 18, 222
BsaI GGTCTC 1 cut(s) 344
BsaWI WCCGGW 2 cut(s) 949, 961
Bsc4I CCNNNNNNNGG 1 cut(s) 297
Bse118I RCCGGY 3 cut(s) 35, 224, 949
Bse3DI GCAATG 1 cut(s) 88
BseBI CCWGG 1 cut(s) 1093
BseGI GGATG 2 cut(s) 255, 412
BseLI CCNNNNNNNGG 1 cut(s) 297
BseMI GCAATG 1 cut(s) 88
BseMII CTCAG 3 cut(s) 283, 294, 310
BsePI GCGCGC 1 cut(s) 84
BseRI GAGGAG 1 cut(s) 643
BseXI GCAGC 1 cut(s) 538
BsgI GTGCAG 2 cut(s) 7, 856
Bsh1236I CGCG 2 cut(s) 86, 568
BshFI GGCC 5 cut(s) 228, 240, 432, 530, 563
BshNI GGYRCC 2 cut(s) 221, 1132
BshTI ACCGGT 1 cut(s) 949
BsiSI CCGG 6 cut(s) 8, 36, 225, 501, 950, 962
BslFI GGGAC 1 cut(s) 391
BslI CCNNNNNNNGG 1 cut(s) 297
BsmAI GTCTC 2 cut(s) 344, 653
BsmFI GGGAC 1 cut(s) 391
BsnI GGCC 5 cut(s) 228, 240, 432, 530, 563
Bso31I GGTCTC 1 cut(s) 344
Bsp1407I TGTACA 1 cut(s) 880
Bsp143I GATC 5 cut(s) 61, 73, 103, 850, 1055
BspACI CCGC 6 cut(s) 33, 48, 184, 237, 903, 1100
BspANI GGCC 5 cut(s) 228, 240, 432, 530, 563
BspCNI CTCAG 3 cut(s) 282, 295, 309
BspFNI CGCG 2 cut(s) 86, 568
BspLI GGNNCC 3 cut(s) 52, 223, 1134
BspMI ACCTGC 2 cut(s) 35, 1164
BspPI GGATC 2 cut(s) 98, 845
BspT107I GGYRCC 2 cut(s) 221, 1132
BspTNI GGTCTC 1 cut(s) 344
BsrDI GCAATG 1 cut(s) 88
BsrFI RCCGGY 3 cut(s) 35, 224, 949
BsrGI TGTACA 1 cut(s) 880
BssAI RCCGGY 3 cut(s) 35, 224, 949
BssHII GCGCGC 1 cut(s) 84
BssMI GATC 5 cut(s) 61, 73, 103, 850, 1055
BssNAI GTATAC 1 cut(s) 535
BssNI GRCGYC 2 cut(s) 18, 222
BssSI CACGAG 1 cut(s) 520
Bst1107I GTATAC 1 cut(s) 535
Bst2BI CACGAG 1 cut(s) 520
Bst2UI CCWGG 1 cut(s) 1093
Bst4CI ACNGT 6 cut(s) 59, 437, 486, 591, 629, 789
Bst6I CTCTTC 2 cut(s) 139, 661
BstACI GRCGYC 2 cut(s) 18, 222
BstAUI TGTACA 1 cut(s) 880
BstC8I GCNNGC 6 cut(s) 37, 86, 226, 388, 549, 905
BstDEI CTNAG 5 cut(s) 269, 286, 296, 303, 447
BstENI CCTNNNNNAGG 1 cut(s) 295
BstF5I GGATG 2 cut(s) 255, 412
BstFNI CGCG 2 cut(s) 86, 568
BstH2I RGCGCY 2 cut(s) 225, 983
BstHHI GCGC 5 cut(s) 86, 88, 224, 982, 1085
BstKTI GATC 5 cut(s) 64, 76, 106, 853, 1058
BstMAI GTCTC 2 cut(s) 344, 653
BstMBI GATC 5 cut(s) 61, 73, 103, 850, 1055
BstMWI GCNNNNNNNGC 9 cut(s) 21, 36, 45, 90, 234, 464, 560, 1097, 1141
BstNI CCWGG 1 cut(s) 1093
BstSCI CCNGG 2 cut(s) 500, 1091
BstUI CGCG 2 cut(s) 86, 568
BstV1I GCAGC 1 cut(s) 538
BstV2I GAAGAC 2 cut(s) 241, 1031
BstX2I RGATCY 2 cut(s) 73, 850
BstYI RGATCY 2 cut(s) 73, 850
BstZ17I GTATAC 1 cut(s) 535
BsuRI GGCC 5 cut(s) 228, 240, 432, 530, 563
BtsCI GGATG 2 cut(s) 255, 412
BtsI GCAGTG 1 cut(s) 1047
BtsIMutI CAGTG 2 cut(s) 408, 1047
BveI ACCTGC 2 cut(s) 35, 1164
Cac8I GCNNGC 6 cut(s) 37, 86, 226, 388, 549, 905
CfoI GCGC 5 cut(s) 86, 88, 224, 982, 1085
Cfr10I RCCGGY 3 cut(s) 35, 224, 949
Cfr13I GGNCC 1 cut(s) 482
Csp6I GTAC 1 cut(s) 881
CspAI ACCGGT 1 cut(s) 949
CviAII CATG 3 cut(s) 731, 859, 897
CviQI GTAC 1 cut(s) 881
DdeI CTNAG 5 cut(s) 269, 286, 296, 303, 447
DinI GGCGCC 1 cut(s) 223
DpnI GATC 5 cut(s) 63, 75, 105, 852, 1057
DpnII GATC 5 cut(s) 61, 73, 103, 850, 1055
DrdI GACNNNNNNGTC 1 cut(s) 17
DseDI GACNNNNNNGTC 1 cut(s) 17
EaeI YGGCCR 2 cut(s) 528, 561
Eam1104I CTCTTC 2 cut(s) 139, 661
EarI CTCTTC 2 cut(s) 139, 661
EciI GGCGGA 1 cut(s) 22
Eco31I GGTCTC 1 cut(s) 344
Eco32I GATATC 1 cut(s) 745
Eco47I GGWCC 1 cut(s) 482
Eco47III AGCGCT 1 cut(s) 981
EcoNI CCTNNNNNAGG 1 cut(s) 295
EcoRII CCWGG 1 cut(s) 1091
EcoRV GATATC 1 cut(s) 745
EgeI GGCGCC 1 cut(s) 223
EheI GGCGCC 1 cut(s) 223
FaeI CATG 3 cut(s) 734, 862, 900
FalI AAGNNNNNCTT 2 cut(s) 338, 370
FaqI GGGAC 1 cut(s) 391
FatI CATG 3 cut(s) 730, 858, 896
FauI CCCGC 2 cut(s) 177, 896
FbaI TGATCA 1 cut(s) 61
FblI GTMKAC 2 cut(s) 534, 607
Fnu4HI GCNGC 4 cut(s) 49, 238, 552, 1101
FokI GGATG 2 cut(s) 242, 419
Fsp4HI GCNGC 4 cut(s) 49, 238, 552, 1101
FspBI CTAG 2 cut(s) 260, 848
FspI TGCGCA 1 cut(s) 1084
GlaI GCGC 5 cut(s) 85, 87, 223, 981, 1084
GluI GCNGC 4 cut(s) 49, 238, 552, 1101
HaeII RGCGCY 2 cut(s) 225, 983
HaeIII GGCC 5 cut(s) 228, 240, 432, 530, 563
HapII CCGG 6 cut(s) 8, 36, 225, 501, 950, 962
HhaI GCGC 5 cut(s) 86, 88, 224, 982, 1085
Hin1I GRCGYC 2 cut(s) 18, 222
Hin1II CATG 3 cut(s) 734, 862, 900
Hin6I GCGC 5 cut(s) 84, 86, 222, 980, 1083
HinP1I GCGC 5 cut(s) 84, 86, 222, 980, 1083
HindIII AAGCTT 1 cut(s) 1060
HinfI GANTC 3 cut(s) 167, 267, 973
HpaII CCGG 6 cut(s) 8, 36, 225, 501, 950, 962
HphI GGTGA 3 cut(s) 71, 205, 641
Hpy166II GTNNAC 4 cut(s) 535, 608, 792, 883
Hpy188I TCNGA 4 cut(s) 103, 172, 272, 972
Hpy188III TCNNGA 3 cut(s) 190, 298, 1006
Hpy8I GTNNAC 4 cut(s) 535, 608, 792, 883
Hpy99I CGWCG 3 cut(s) 20, 118, 121
HpyAV CCTTC 1 cut(s) 340
HpyCH4III ACNGT 6 cut(s) 59, 437, 486, 591, 629, 789
HpyCH4IV ACGT 2 cut(s) 18, 147
HpyCH4V TGCA 7 cut(s) 24, 93, 386, 757, 776, 873, 1052
HpyF10VI GCNNNNNNNGC 9 cut(s) 21, 36, 45, 90, 234, 464, 560, 1097, 1141
HpyF3I CTNAG 5 cut(s) 269, 286, 296, 303, 447
HpySE526I ACGT 2 cut(s) 18, 147
Hsp92I GRCGYC 2 cut(s) 18, 222
Hsp92II CATG 3 cut(s) 734, 862, 900
HspAI GCGC 5 cut(s) 84, 86, 222, 980, 1083
KasI GGCGCC 1 cut(s) 221
KroI GCCGGC 2 cut(s) 35, 224
KroNI GCCGGC 2 cut(s) 37, 226
Ksp22I TGATCA 1 cut(s) 61
Kzo9I GATC 5 cut(s) 61, 73, 103, 850, 1055
LmnI GCTCC 2 cut(s) 35, 56
Lsp1109I GCAGC 1 cut(s) 538
LweI GCATC 1 cut(s) 1094
MaeI CTAG 2 cut(s) 260, 848
MaeII ACGT 2 cut(s) 18, 147
MaeIII GTNAC 3 cut(s) 190, 334, 629
MalI GATC 5 cut(s) 63, 75, 105, 852, 1057
MboI GATC 5 cut(s) 61, 73, 103, 850, 1055
MboII GAAGA 6 cut(s) 83, 126, 241, 648, 950, 1031
MfeI CAATTG 1 cut(s) 330
MflI RGATCY 2 cut(s) 73, 850
MlsI TGGCCA 1 cut(s) 563
MluCI AATT 4 cut(s) 330, 750, 796, 924
MluI ACGCGT 1 cut(s) 566
MluNI TGGCCA 1 cut(s) 563
Mly113I GGCGCC 1 cut(s) 222
MlyI GAGTC 1 cut(s) 261
MmeI TCCRAC 1 cut(s) 78
Mox20I TGGCCA 1 cut(s) 563
MreI CGCCGGCG 1 cut(s) 35
MroNI GCCGGC 2 cut(s) 35, 224
MscI TGGCCA 1 cut(s) 563
MseI TTAA 4 cut(s) 204, 579, 765, 843
MslI CAYNNNNRTG 2 cut(s) 542, 1184
Msp20I TGGCCA 1 cut(s) 563
MspA1I CMGCKG 1 cut(s) 1100
MspI CCGG 6 cut(s) 8, 36, 225, 501, 950, 962
MspR9I CCNGG 2 cut(s) 502, 1093
MunI CAATTG 1 cut(s) 330
MvaI CCWGG 1 cut(s) 1093
MvnI CGCG 2 cut(s) 86, 568
MwoI GCNNNNNNNGC 9 cut(s) 21, 36, 45, 90, 234, 464, 560, 1097, 1141
NaeI GCCGGC 2 cut(s) 37, 226
NarI GGCGCC 1 cut(s) 222
NciI CCSGG 1 cut(s) 502
NdeII GATC 5 cut(s) 61, 73, 103, 850, 1055
NgoMIV GCCGGC 2 cut(s) 35, 224
NlaIII CATG 3 cut(s) 734, 862, 900
NlaIV GGNNCC 3 cut(s) 52, 223, 1134
NmuCI GTSAC 2 cut(s) 190, 629
NsbI TGCGCA 1 cut(s) 1084
PaqCI CACCTGC 1 cut(s) 35
PauI GCGCGC 1 cut(s) 84
PcsI WCGNNNNNNNCGW 1 cut(s) 595
PdiI GCCGGC 2 cut(s) 37, 226
PfeI GAWTC 2 cut(s) 167, 973
PinAI ACCGGT 1 cut(s) 949
PkrI GCNGC 4 cut(s) 50, 239, 553, 1102
PleI GAGTC 1 cut(s) 261
PluTI GGCGCC 1 cut(s) 225
PpsI GAGTC 1 cut(s) 261
Psp6I CCWGG 1 cut(s) 1091
PspGI CCWGG 1 cut(s) 1091
PspN4I GGNNCC 3 cut(s) 52, 223, 1134
PspPI GGNCC 1 cut(s) 482
PsuI RGATCY 2 cut(s) 73, 850
PteI GCGCGC 1 cut(s) 84
RsaI GTAC 1 cut(s) 882
RsaNI GTAC 1 cut(s) 881
RseI CAYNNNNRTG 2 cut(s) 542, 1184
SaqAI TTAA 4 cut(s) 204, 579, 765, 843
SatI GCNGC 4 cut(s) 49, 238, 552, 1101
Sau3AI GATC 5 cut(s) 61, 73, 103, 850, 1055
Sau96I GGNCC 1 cut(s) 482
SchI GAGTC 1 cut(s) 261
ScrFI CCNGG 2 cut(s) 502, 1093
SfaNI GCATC 1 cut(s) 1094
SfoI GGCGCC 1 cut(s) 223
SgrAI CRCCGGYG 1 cut(s) 35
SinI GGWCC 1 cut(s) 482
SmiMI CAYNNNNRTG 2 cut(s) 542, 1184
SmlI CTYRAG 1 cut(s) 355
SmoI CTYRAG 1 cut(s) 355
Sse9I AATT 4 cut(s) 330, 750, 796, 924
SsiI CCGC 6 cut(s) 33, 48, 184, 237, 903, 1100
SspDI GGCGCC 1 cut(s) 221
SspI AATATT 2 cut(s) 841, 1169
SspMI CTAG 2 cut(s) 260, 848
StyD4I CCNGG 2 cut(s) 500, 1091
TaaI ACNGT 6 cut(s) 59, 437, 486, 591, 629, 789
TaiI ACGT 2 cut(s) 21, 150
TaqI TCGA 1 cut(s) 200
TasI AATT 4 cut(s) 330, 750, 796, 924
TatI WGTACW 1 cut(s) 880
TauI GCSGC 3 cut(s) 51, 240, 1103
TfiI GAWTC 2 cut(s) 167, 973
Tru1I TTAA 4 cut(s) 204, 579, 765, 843
Tru9I TTAA 4 cut(s) 204, 579, 765, 843
TscAI CASTG 2 cut(s) 408, 1054
TseFI GTSAC 2 cut(s) 190, 629
TseI GCWGC 1 cut(s) 551
Tsp45I GTSAC 2 cut(s) 190, 629
TspDTI ATGAA 3 cut(s) 339, 875, 980
TspGWI ACGGA 3 cut(s) 102, 900, 1063
TspRI CASTG 2 cut(s) 408, 1054
VpaK11BI GGWCC 1 cut(s) 482
XagI CCTNNNNNAGG 1 cut(s) 295
XmiI GTMKAC 2 cut(s) 534, 607
XspI CTAG 2 cut(s) 260, 848
ZraI GACGTC 1 cut(s) 19
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.