Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000233.1

Orthogroup ID

OG0001014

Physical Location & Seq

Genomic Coordinates Reverse (-)

288203 .. 288496

Gene Structure 294 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000233.1_g000066.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 294 bp

atgtcgccggactatgacgtctgtacctgccagaatggcggctccaacggtgatcacacagaagatctggtgtgcgcgcattactggaaatttgatccctctccgtcgtcgttttgctattcctcttcggtcaaataccttcctgtgctgttgagcgattccgagaagctacggagggtcgtgactgcttcgattaagggtttcaccatcggcgccggcctcaaaggcggcctcgccgtcttctccatcctagctagactcagaaagagaaagctcttagcctctctcaggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TMEM135_C_rich

Protein Analysis

97

Amino Acids

10.6

Weight (kDa)

9.21

Isoelectric Point (pI)

62.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001014)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G34630 AT1G34630 AT1G34630 AT1G34630 AT1G34630
fragaria_vesca	FvH4_5g37331 FvH4_5g37331
malus_domestica	MD08G1182800.v1.1
prunus_persica	Prupe.1G517000_v2.0.a1 Prupe.1G517000_v2.0.a1
pyrus_communis	pycom08g15660
rosa_chinensis	RchiOBHm_Chr3g0470741 RchiOBHm_Chr4g0408951 RchiOBHm_Chr7g0238981
rosa_laevigata	RLG00000000793 RLG00000007867 RLG00000014356 RLG00000015234 RLG00000016579 RLG00000020758
rosa_multiflora	Rmu_co8298683.1_g000001 Rmu_sc0002152.1_g000014 Rmu_sc0004132.1_g000004 Rmu_sc0004879.1_g000005 Rmu_sc0005866.1_g000014 Rmu_sc0010178.1_g000001 Rmu_sc0029797.1_g000001 Rmu_sc0032697.1_g000001 Rmu_sc0034117.1_g000001 Rmu_ssc0000233.1_g000066
rosa_roxburghii	Rroxscaffold_3G00221410 Rroxscaffold_3G00221420
rosa_rugosa	Rorug03G0157600 Rorug05G0148200 Rorug05G0232900 Rorug05G0238700 Rorug07G0324200.1
rosa_samantha	Rh1BG208000 Rh1DG234700 Rh2AG003700 Rh2AG216800 Rh2DG222500 Rh3AG161900 Rh3AG329400 Rh3BG186700 Rh3CG176900 Rh3DG308000 Rh4AG125400 Rh4AG152700 Rh4BG154900 Rh4CG133600 Rh4DG112900 Rh5AG299600 Rh7AG465300 Rh7AG479200 Rh7BG451800 Rh7CG251000 Rh7CG496300 Rh7DG343400 Rh7DG463900
rosa_wichuraiana	Rw7G040000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	17
AatII	GACGTC	1 cut(s)	21
Acc36I	ACCTGC	1 cut(s)	35
AccB1I	GGYRCC	1 cut(s)	212
AccII	CGCG	1 cut(s)	77
AciI	CCGC	2 cut(s)	39, 228
AclWI	GGATC	1 cut(s)	89
AcsI	RAATTY	1 cut(s)	89
AcyI	GRCGYC	2 cut(s)	18, 213
AfaI	GTAC	1 cut(s)	25
AfiI	CCNNNNNNNGG	1 cut(s)	288
AluBI	AGCT	3 cut(s)	169, 254, 274
AluI	AGCT	3 cut(s)	169, 254, 274
AlwI	GGATC	1 cut(s)	89
AoxI	GGCC	2 cut(s)	217, 229
ApoI	RAATTY	1 cut(s)	89
AspLEI	GCGC	3 cut(s)	77, 79, 215
AsuHPI	GGTGA	2 cut(s)	62, 196
BaeI	ACNNNNGTAYC	2 cut(s)	7, 40
BanI	GGYRCC	1 cut(s)	212
BbsI	GAAGAC	1 cut(s)	232
BccI	CCATC	2 cut(s)	215, 254
BceAI	ACGGC	1 cut(s)	221
BclI	TGATCA	1 cut(s)	52
BfaI	CTAG	2 cut(s)	251, 255
BfoI	RGCGCY	1 cut(s)	216
BfuAI	ACCTGC	1 cut(s)	35
BglI	GCCNNNNNGGC	2 cut(s)	36, 225
BglII	AGATCT	1 cut(s)	64
BisI	GCNGC	2 cut(s)	40, 229
BlsI	GCNGC	2 cut(s)	41, 230
BmiI	GGNNCC	2 cut(s)	43, 214
BpiI	GAAGAC	1 cut(s)	232
BsaHI	GRCGYC	2 cut(s)	18, 213
Bsc4I	CCNNNNNNNGG	1 cut(s)	288
Bse118I	RCCGGY	1 cut(s)	215
Bse1I	ACTGG	1 cut(s)	89
BseGI	GGATG	1 cut(s)	246
BseLI	CCNNNNNNNGG	1 cut(s)	288
BseMII	CTCAG	1 cut(s)	274
BseNI	ACTGG	1 cut(s)	89
BsePI	GCGCGC	1 cut(s)	75
Bsh1236I	CGCG	1 cut(s)	77
BshFI	GGCC	2 cut(s)	219, 231
BshNI	GGYRCC	1 cut(s)	212
BsiSI	CCGG	2 cut(s)	8, 216
BslI	CCNNNNNNNGG	1 cut(s)	288
BsnI	GGCC	2 cut(s)	219, 231
Bsp143I	GATC	3 cut(s)	52, 64, 94
BspACI	CCGC	2 cut(s)	39, 228
BspANI	GGCC	2 cut(s)	219, 231
BspCNI	CTCAG	1 cut(s)	273
BspFNI	CGCG	1 cut(s)	77
BspLI	GGNNCC	2 cut(s)	43, 214
BspMI	ACCTGC	1 cut(s)	35
BspPI	GGATC	1 cut(s)	89
BspT107I	GGYRCC	1 cut(s)	212
BsrFI	RCCGGY	1 cut(s)	215
BsrI	ACTGG	1 cut(s)	89
BssAI	RCCGGY	1 cut(s)	215
BssHII	GCGCGC	1 cut(s)	75
BssMI	GATC	3 cut(s)	52, 64, 94
BssNI	GRCGYC	2 cut(s)	18, 213
Bst4CI	ACNGT	1 cut(s)	50
Bst6I	CTCTTC	1 cut(s)	130
BstACI	GRCGYC	2 cut(s)	18, 213
BstC8I	GCNNGC	2 cut(s)	77, 217
BstDEI	CTNAG	3 cut(s)	260, 277, 287
BstENI	CCTNNNNNAGG	1 cut(s)	286
BstF5I	GGATG	1 cut(s)	246
BstFNI	CGCG	1 cut(s)	77
BstH2I	RGCGCY	1 cut(s)	216
BstHHI	GCGC	3 cut(s)	77, 79, 215
BstKTI	GATC	3 cut(s)	55, 67, 97
BstMBI	GATC	3 cut(s)	52, 64, 94
BstMWI	GCNNNNNNNGC	2 cut(s)	36, 225
BstUI	CGCG	1 cut(s)	77
BstV2I	GAAGAC	1 cut(s)	232
BstX2I	RGATCY	1 cut(s)	64
BstYI	RGATCY	1 cut(s)	64
BsuRI	GGCC	2 cut(s)	219, 231
BtsCI	GGATG	1 cut(s)	246
BveI	ACCTGC	1 cut(s)	35
Cac8I	GCNNGC	2 cut(s)	77, 217
CfoI	GCGC	3 cut(s)	77, 79, 215
Cfr10I	RCCGGY	1 cut(s)	215
Csp6I	GTAC	1 cut(s)	24
CviJI	RGCY	7 cut(s)	42, 169, 219, 231, 254, 274, 281
CviKI_1	RGCY	7 cut(s)	42, 169, 219, 231, 254, 274, 281
CviQI	GTAC	1 cut(s)	24
DdeI	CTNAG	3 cut(s)	260, 277, 287
DinI	GGCGCC	1 cut(s)	214
DpnI	GATC	3 cut(s)	54, 66, 96
DpnII	GATC	3 cut(s)	52, 64, 94
DrdI	GACNNNNNNGTC	1 cut(s)	17
DseDI	GACNNNNNNGTC	1 cut(s)	17
Eam1104I	CTCTTC	1 cut(s)	130
EarI	CTCTTC	1 cut(s)	130
EcoNI	CCTNNNNNAGG	1 cut(s)	286
EgeI	GGCGCC	1 cut(s)	214
EheI	GGCGCC	1 cut(s)	214
FaiI	YATR	1 cut(s)	15
FbaI	TGATCA	1 cut(s)	52
Fnu4HI	GCNGC	2 cut(s)	40, 229
FokI	GGATG	1 cut(s)	233
Fsp4HI	GCNGC	2 cut(s)	40, 229
FspBI	CTAG	2 cut(s)	251, 255
GlaI	GCGC	3 cut(s)	76, 78, 214
GluI	GCNGC	2 cut(s)	40, 229
HaeII	RGCGCY	1 cut(s)	216
HaeIII	GGCC	2 cut(s)	219, 231
HapII	CCGG	2 cut(s)	8, 216
HhaI	GCGC	3 cut(s)	77, 79, 215
Hin1I	GRCGYC	2 cut(s)	18, 213
Hin6I	GCGC	3 cut(s)	75, 77, 213
HinP1I	GCGC	3 cut(s)	75, 77, 213
HinfI	GANTC	2 cut(s)	158, 258
HpaII	CCGG	2 cut(s)	8, 216
HphI	GGTGA	2 cut(s)	62, 196
Hpy188I	TCNGA	2 cut(s)	163, 263
Hpy188III	TCNNGA	1 cut(s)	181
Hpy99I	CGWCG	2 cut(s)	109, 112
HpyAV	CCTTC	1 cut(s)	149
HpyCH4III	ACNGT	1 cut(s)	50
HpyCH4IV	ACGT	1 cut(s)	18
HpyF10VI	GCNNNNNNNGC	2 cut(s)	36, 225
HpyF3I	CTNAG	3 cut(s)	260, 277, 287
HpySE526I	ACGT	1 cut(s)	18
Hsp92I	GRCGYC	2 cut(s)	18, 213
HspAI	GCGC	3 cut(s)	75, 77, 213
KasI	GGCGCC	1 cut(s)	212
KroI	GCCGGC	1 cut(s)	215
KroNI	GCCGGC	1 cut(s)	217
Ksp22I	TGATCA	1 cut(s)	52
Kzo9I	GATC	3 cut(s)	52, 64, 94
LmnI	GCTCC	1 cut(s)	47
LpnPI	CCDG	8 cut(s)	21, 40, 44, 53, 70, 156, 229, 274
MaeI	CTAG	2 cut(s)	251, 255
MaeII	ACGT	1 cut(s)	18
MaeIII	GTNAC	1 cut(s)	181
MalI	GATC	3 cut(s)	54, 66, 96
MboI	GATC	3 cut(s)	52, 64, 94
MboII	GAAGA	3 cut(s)	74, 117, 232
MflI	RGATCY	1 cut(s)	64
MluCI	AATT	1 cut(s)	89
Mly113I	GGCGCC	1 cut(s)	213
MlyI	GAGTC	1 cut(s)	252
MmeI	TCCRAC	1 cut(s)	69
MnlI	CCTC	6 cut(s)	109, 133, 168, 230, 242, 292
MroNI	GCCGGC	1 cut(s)	215
MseI	TTAA	1 cut(s)	195
MspI	CCGG	2 cut(s)	8, 216
MvnI	CGCG	1 cut(s)	77
MwoI	GCNNNNNNNGC	2 cut(s)	36, 225
NaeI	GCCGGC	1 cut(s)	217
NarI	GGCGCC	1 cut(s)	213
NdeII	GATC	3 cut(s)	52, 64, 94
NgoMIV	GCCGGC	1 cut(s)	215
NlaIV	GGNNCC	2 cut(s)	43, 214
NmuCI	GTSAC	1 cut(s)	181
PauI	GCGCGC	1 cut(s)	75
PdiI	GCCGGC	1 cut(s)	217
PfeI	GAWTC	1 cut(s)	158
PkrI	GCNGC	2 cut(s)	41, 230
PleI	GAGTC	1 cut(s)	252
PluTI	GGCGCC	1 cut(s)	216
PpsI	GAGTC	1 cut(s)	252
PspN4I	GGNNCC	2 cut(s)	43, 214
PsuI	RGATCY	1 cut(s)	64
PteI	GCGCGC	1 cut(s)	75
RsaI	GTAC	1 cut(s)	25
RsaNI	GTAC	1 cut(s)	24
SaqAI	TTAA	1 cut(s)	195
SatI	GCNGC	2 cut(s)	40, 229
Sau3AI	GATC	3 cut(s)	52, 64, 94
SchI	GAGTC	1 cut(s)	252
SetI	ASST	7 cut(s)	21, 29, 141, 171, 256, 276, 293
SfoI	GGCGCC	1 cut(s)	214
Sse9I	AATT	1 cut(s)	89
SsiI	CCGC	2 cut(s)	39, 228
SspDI	GGCGCC	1 cut(s)	212
SspMI	CTAG	2 cut(s)	251, 255
TaaI	ACNGT	1 cut(s)	50
TaiI	ACGT	1 cut(s)	21
TaqI	TCGA	1 cut(s)	191
TaqII	GACCGA	1 cut(s)	118
TasI	AATT	1 cut(s)	89
TauI	GCSGC	2 cut(s)	42, 231
TfiI	GAWTC	1 cut(s)	158
Tru1I	TTAA	1 cut(s)	195
Tru9I	TTAA	1 cut(s)	195
TseFI	GTSAC	1 cut(s)	181
Tsp45I	GTSAC	1 cut(s)	181
TspGWI	ACGGA	2 cut(s)	93, 187
XagI	CCTNNNNNAGG	1 cut(s)	286
XapI	RAATTY	1 cut(s)	89
XspI	CTAG	2 cut(s)	251, 255
ZraI	GACGTC	1 cut(s)	19

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.