Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005866.1

Orthogroup ID

OG0001014

Physical Location & Seq

Genomic Coordinates Forward (+)

70907 .. 72641

Gene Structure 1735 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005866.1_g000014.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

atgtcgccggactgcgacgtctgcacctgctgggcttgccagaatggcggctccaacagtgatcacgccgaagatctggtgtgcacgcattactggaaatctgatccctctccgtcgtcgttttgctattcctcttcagtcaaatacgttcctgtgccgtcgagctattccgagaagctacggcgggtcgtgactgcttcgattaagggtttcaccatcggcgccggcctcaaaggctgcctcgccgtcttctccatcctagctaaactcagaaagagaaagctcttagcctctcttaggactgagggtgcgattatgaataatgaagcaattgttgctgttttgaacgagaccttgagatatggtctgtttcttgggacttttgcaggcacatttgtttcagtggatgagattattgcttctttgggaggccaccgtaggcacgttccttgttattttatattcagcttcgcatggacagctaagtggagggctttgttagcagggcttatagcaggaccgtctatgcttcttaccgggcataacacgcagcatacgtgcttggctgtatacatacttatgagtgctgccatgttggccacgcgttgtgggattaaaagcaaacggtttggtcgtgtttgtagacctctcacttggaagcacggtgacattggagatattgttaaaaccaagacggcgaccatcgcggagccgcagttcgcgacagcaaaaacgtcaaggtacccggtctcattagtggacagccacaccattgcccagaacataagatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TMEM135_C_rich

Protein Analysis

263

Amino Acids

28.69

Weight (kDa)

9.43

Isoelectric Point (pI)

45.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001014)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G34630 AT1G34630 AT1G34630 AT1G34630 AT1G34630
fragaria_vesca	FvH4_5g37331 FvH4_5g37331
malus_domestica	MD08G1182800.v1.1
prunus_persica	Prupe.1G517000_v2.0.a1 Prupe.1G517000_v2.0.a1
pyrus_communis	pycom08g15660
rosa_chinensis	RchiOBHm_Chr3g0470741 RchiOBHm_Chr4g0408951 RchiOBHm_Chr7g0238981
rosa_laevigata	RLG00000000793 RLG00000007867 RLG00000014356 RLG00000015234 RLG00000016579 RLG00000020758
rosa_multiflora	Rmu_co8298683.1_g000001 Rmu_sc0002152.1_g000014 Rmu_sc0004132.1_g000004 Rmu_sc0004879.1_g000005 Rmu_sc0005866.1_g000014 Rmu_sc0010178.1_g000001 Rmu_sc0029797.1_g000001 Rmu_sc0032697.1_g000001 Rmu_sc0034117.1_g000001 Rmu_ssc0000233.1_g000066
rosa_roxburghii	Rroxscaffold_3G00221410 Rroxscaffold_3G00221420
rosa_rugosa	Rorug03G0157600 Rorug05G0148200 Rorug05G0232900 Rorug05G0238700 Rorug07G0324200.1
rosa_samantha	Rh1BG208000 Rh1DG234700 Rh2AG003700 Rh2AG216800 Rh2DG222500 Rh3AG161900 Rh3AG329400 Rh3BG186700 Rh3CG176900 Rh3DG308000 Rh4AG125400 Rh4AG152700 Rh4BG154900 Rh4CG133600 Rh4DG112900 Rh5AG299600 Rh7AG465300 Rh7AG479200 Rh7BG451800 Rh7CG251000 Rh7CG496300 Rh7DG343400 Rh7DG463900
rosa_wichuraiana	Rw7G040000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	35
AasI	GACNNNNNNGTC	1 cut(s)	17
AatII	GACGTC	1 cut(s)	21
Acc36I	ACCTGC	1 cut(s)	35
Acc65I	GGTACC	1 cut(s)	741
AccB1I	GGYRCC	2 cut(s)	221, 741
AccI	GTMKAC	2 cut(s)	570, 643
AccII	CGCG	3 cut(s)	604, 707, 722
AciI	CCGC	4 cut(s)	48, 184, 707, 713
AclWI	GGATC	1 cut(s)	98
AcoI	YGGCCR	1 cut(s)	597
AcuI	CTGAAG	1 cut(s)	120
AcyI	GRCGYC	2 cut(s)	18, 222
AfaI	GTAC	1 cut(s)	743
AfiI	CCNNNNNNNGG	1 cut(s)	297
AflIII	ACRYGT	1 cut(s)	602
AgsI	TTSAA	1 cut(s)	346
AloI	GAACNNNNNNTCC	2 cut(s)	701, 733
AluBI	AGCT	6 cut(s)	165, 178, 263, 283, 468, 482
AluI	AGCT	6 cut(s)	165, 178, 263, 283, 468, 482
Alw21I	GWGCWC	1 cut(s)	86
Alw26I	GTCTC	2 cut(s)	344, 754
Alw44I	GTGCAC	1 cut(s)	82
AlwI	GGATC	1 cut(s)	98
AoxI	GGCC	3 cut(s)	226, 430, 597
ApaLI	GTGCAC	1 cut(s)	82
ApeKI	GCWGC	3 cut(s)	237, 550, 587
Asp718I	GGTACC	1 cut(s)	741
AspLEI	GCGC	1 cut(s)	224
AspS9I	GGNCC	1 cut(s)	518
AsuC2I	CCSGG	2 cut(s)	538, 746
AsuHPI	GGTGA	2 cut(s)	205, 677
AvaII	GGWCC	1 cut(s)	518
BaeGI	GKGCMC	1 cut(s)	86
BalI	TGGCCA	1 cut(s)	599
BanI	GGYRCC	2 cut(s)	221, 741
BbsI	GAAGAC	1 cut(s)	241
Bbv12I	GWGCWC	1 cut(s)	86
BbvI	GCAGC	3 cut(s)	224, 562, 574
BccI	CCATC	3 cut(s)	224, 263, 710
BceAI	ACGGC	4 cut(s)	142, 197, 230, 711
BclI	TGATCA	1 cut(s)	61
BcnI	CCSGG	2 cut(s)	538, 746
BcoDI	GTCTC	2 cut(s)	344, 754
BfaI	CTAG	1 cut(s)	260
BfoI	RGCGCY	1 cut(s)	225
BfuAI	ACCTGC	1 cut(s)	35
BglI	GCCNNNNNGGC	3 cut(s)	45, 234, 596
BglII	AGATCT	1 cut(s)	73
BisI	GCNGC	5 cut(s)	49, 238, 551, 588, 713
BlsI	GCNGC	5 cut(s)	50, 239, 552, 589, 714
Bme1390I	CCNGG	2 cut(s)	538, 746
Bme18I	GGWCC	1 cut(s)	518
BmgT120I	GGNCC	1 cut(s)	518
BmiI	GGNNCC	4 cut(s)	52, 223, 711, 743
BmrFI	CCNGG	2 cut(s)	538, 746
BpiI	GAAGAC	1 cut(s)	241
BpuEI	CTTGAG	1 cut(s)	376
BpuMI	CCSGG	2 cut(s)	538, 746
BsaAI	YACGTR	1 cut(s)	558
BsaHI	GRCGYC	2 cut(s)	18, 222
BsaI	GGTCTC	2 cut(s)	344, 754
BsaXI	ACNNNNNCTCC	4 cut(s)	666, 696, 701, 731
Bsc4I	CCNNNNNNNGG	1 cut(s)	297
Bse118I	RCCGGY	1 cut(s)	224
Bse1I	ACTGG	1 cut(s)	98
Bse3DI	GCAATG	1 cut(s)	771
BseGI	GGATG	2 cut(s)	255, 412
BseLI	CCNNNNNNNGG	1 cut(s)	297
BseMI	GCAATG	1 cut(s)	771
BseMII	CTCAG	2 cut(s)	283, 294
BseNI	ACTGG	1 cut(s)	98
BseSI	GKGCMC	1 cut(s)	86
BseXI	GCAGC	3 cut(s)	224, 562, 574
BseYI	CCCAGC	1 cut(s)	30
BsgI	GTGCAG	1 cut(s)	7
Bsh1236I	CGCG	3 cut(s)	604, 707, 722
BshFI	GGCC	3 cut(s)	228, 432, 599
BshNI	GGYRCC	2 cut(s)	221, 741
BsiHKAI	GWGCWC	1 cut(s)	86
BsiSI	CCGG	4 cut(s)	8, 225, 537, 746
BslFI	GGGAC	1 cut(s)	391
BslI	CCNNNNNNNGG	1 cut(s)	297
BsmAI	GTCTC	2 cut(s)	344, 754
BsmFI	GGGAC	1 cut(s)	391
BsnI	GGCC	3 cut(s)	228, 432, 599
Bso31I	GGTCTC	2 cut(s)	344, 754
Bsp1286I	GDGCHC	1 cut(s)	86
Bsp143I	GATC	3 cut(s)	61, 73, 103
Bsp68I	TCGCGA	1 cut(s)	722
BspACI	CCGC	4 cut(s)	48, 184, 707, 713
BspANI	GGCC	3 cut(s)	228, 432, 599
BspCNI	CTCAG	2 cut(s)	282, 295
BspFNI	CGCG	3 cut(s)	604, 707, 722
BspLI	GGNNCC	4 cut(s)	52, 223, 711, 743
BspMI	ACCTGC	1 cut(s)	35
BspPI	GGATC	1 cut(s)	98
BspT107I	GGYRCC	2 cut(s)	221, 741
BspTNI	GGTCTC	2 cut(s)	344, 754
BsrDI	GCAATG	1 cut(s)	771
BsrFI	RCCGGY	1 cut(s)	224
BsrI	ACTGG	1 cut(s)	98
BssAI	RCCGGY	1 cut(s)	224
BssMI	GATC	3 cut(s)	61, 73, 103
BssNAI	GTATAC	1 cut(s)	571
BssNI	GRCGYC	2 cut(s)	18, 222
Bst1107I	GTATAC	1 cut(s)	571
Bst4CI	ACNGT	5 cut(s)	59, 437, 522, 627, 665
Bst6I	CTCTTC	1 cut(s)	139
BstACI	GRCGYC	2 cut(s)	18, 222
BstAPI	GCANNNNNTGC	1 cut(s)	335
BstBAI	YACGTR	1 cut(s)	558
BstC8I	GCNNGC	4 cut(s)	37, 86, 226, 388
BstDEI	CTNAG	5 cut(s)	269, 286, 296, 303, 483
BstENI	CCTNNNNNAGG	1 cut(s)	295
BstF5I	GGATG	2 cut(s)	255, 412
BstFNI	CGCG	3 cut(s)	604, 707, 722
BstH2I	RGCGCY	1 cut(s)	225
BstHHI	GCGC	1 cut(s)	224
BstKTI	GATC	3 cut(s)	64, 76, 106
BstMAI	GTCTC	2 cut(s)	344, 754
BstMBI	GATC	3 cut(s)	61, 73, 103
BstSCI	CCNGG	2 cut(s)	536, 744
BstSLI	GKGCMC	1 cut(s)	86
BstUI	CGCG	3 cut(s)	604, 707, 722
BstV1I	GCAGC	3 cut(s)	224, 562, 574
BstV2I	GAAGAC	1 cut(s)	241
BstX2I	RGATCY	1 cut(s)	73
BstYI	RGATCY	1 cut(s)	73
BstZ17I	GTATAC	1 cut(s)	571
BsuRI	GGCC	3 cut(s)	228, 432, 599
BtgZI	GCGATG	1 cut(s)	688
BtsCI	GGATG	2 cut(s)	255, 412
BtsIMutI	CAGTG	2 cut(s)	64, 408
BtuMI	TCGCGA	1 cut(s)	722
BveI	ACCTGC	1 cut(s)	35
Cac8I	GCNNGC	4 cut(s)	37, 86, 226, 388
CfoI	GCGC	1 cut(s)	224
Cfr10I	RCCGGY	1 cut(s)	224
Cfr13I	GGNCC	1 cut(s)	518
Csp6I	GTAC	1 cut(s)	742
CviAII	CATG	2 cut(s)	474, 592
CviQI	GTAC	1 cut(s)	742
DdeI	CTNAG	5 cut(s)	269, 286, 296, 303, 483
DinI	GGCGCC	1 cut(s)	223
DpnI	GATC	3 cut(s)	63, 75, 105
DpnII	GATC	3 cut(s)	61, 73, 103
DrdI	GACNNNNNNGTC	1 cut(s)	17
DseDI	GACNNNNNNGTC	1 cut(s)	17
EaeI	YGGCCR	1 cut(s)	597
Eam1104I	CTCTTC	1 cut(s)	139
EarI	CTCTTC	1 cut(s)	139
Eco31I	GGTCTC	2 cut(s)	344, 754
Eco47I	GGWCC	1 cut(s)	518
Eco57I	CTGAAG	1 cut(s)	120
EcoNI	CCTNNNNNAGG	1 cut(s)	295
EgeI	GGCGCC	1 cut(s)	223
EheI	GGCGCC	1 cut(s)	223
FaeI	CATG	2 cut(s)	477, 595
FaqI	GGGAC	1 cut(s)	391
FatI	CATG	2 cut(s)	473, 591
FauI	CCCGC	1 cut(s)	177
FbaI	TGATCA	1 cut(s)	61
FblI	GTMKAC	2 cut(s)	570, 643
Fnu4HI	GCNGC	5 cut(s)	49, 238, 551, 588, 713
FokI	GGATG	2 cut(s)	242, 419
Fsp4HI	GCNGC	5 cut(s)	49, 238, 551, 588, 713
FspBI	CTAG	1 cut(s)	260
GlaI	GCGC	1 cut(s)	223
GluI	GCNGC	5 cut(s)	49, 238, 551, 588, 713
GsaI	CCCAGC	1 cut(s)	34
HaeII	RGCGCY	1 cut(s)	225
HaeIII	GGCC	3 cut(s)	228, 432, 599
HapII	CCGG	4 cut(s)	8, 225, 537, 746
HhaI	GCGC	1 cut(s)	224
Hin1I	GRCGYC	2 cut(s)	18, 222
Hin1II	CATG	2 cut(s)	477, 595
Hin6I	GCGC	1 cut(s)	222
HinP1I	GCGC	1 cut(s)	222
HpaII	CCGG	4 cut(s)	8, 225, 537, 746
HphI	GGTGA	2 cut(s)	205, 677
Hpy166II	GTNNAC	4 cut(s)	84, 571, 644, 760
Hpy188I	TCNGA	3 cut(s)	103, 172, 272
Hpy188III	TCNNGA	2 cut(s)	190, 721
Hpy8I	GTNNAC	4 cut(s)	84, 571, 644, 760
Hpy99I	CGWCG	4 cut(s)	20, 118, 121, 163
HpyCH4III	ACNGT	5 cut(s)	59, 437, 522, 627, 665
HpyCH4IV	ACGT	5 cut(s)	18, 147, 444, 557, 734
HpyCH4V	TGCA	3 cut(s)	24, 84, 386
HpyF3I	CTNAG	5 cut(s)	269, 286, 296, 303, 483
HpySE526I	ACGT	5 cut(s)	18, 147, 444, 557, 734
Hsp92I	GRCGYC	2 cut(s)	18, 222
Hsp92II	CATG	2 cut(s)	477, 595
HspAI	GCGC	1 cut(s)	222
KasI	GGCGCC	1 cut(s)	221
KpnI	GGTACC	1 cut(s)	745
KroI	GCCGGC	1 cut(s)	224
KroNI	GCCGGC	1 cut(s)	226
Ksp22I	TGATCA	1 cut(s)	61
Kzo9I	GATC	3 cut(s)	61, 73, 103
LmnI	GCTCC	2 cut(s)	56, 709
Lsp1109I	GCAGC	3 cut(s)	224, 562, 574
MaeI	CTAG	1 cut(s)	260
MaeII	ACGT	5 cut(s)	18, 147, 444, 557, 734
MaeIII	GTNAC	2 cut(s)	190, 665
MalI	GATC	3 cut(s)	63, 75, 105
MboI	GATC	3 cut(s)	61, 73, 103
MboII	GAAGA	3 cut(s)	83, 126, 241
MfeI	CAATTG	1 cut(s)	330
MflI	RGATCY	1 cut(s)	73
MhlI	GDGCHC	1 cut(s)	86
MlsI	TGGCCA	1 cut(s)	599
MluCI	AATT	1 cut(s)	330
MluI	ACGCGT	1 cut(s)	602
MluNI	TGGCCA	1 cut(s)	599
Mly113I	GGCGCC	1 cut(s)	222
MmeI	TCCRAC	1 cut(s)	78
MnlI	CCTC	9 cut(s)	118, 142, 239, 251, 298, 301, 422, 483, 657
Mox20I	TGGCCA	1 cut(s)	599
MroNI	GCCGGC	1 cut(s)	224
MscI	TGGCCA	1 cut(s)	599
MseI	TTAA	3 cut(s)	204, 615, 684
MslI	CAYNNNNRTG	1 cut(s)	578
Msp20I	TGGCCA	1 cut(s)	599
MspI	CCGG	4 cut(s)	8, 225, 537, 746
MspR9I	CCNGG	2 cut(s)	538, 746
MunI	CAATTG	1 cut(s)	330
MvnI	CGCG	3 cut(s)	604, 707, 722
NaeI	GCCGGC	1 cut(s)	226
NarI	GGCGCC	1 cut(s)	222
NciI	CCSGG	2 cut(s)	538, 746
NdeII	GATC	3 cut(s)	61, 73, 103
NgoMIV	GCCGGC	1 cut(s)	224
NlaIII	CATG	2 cut(s)	477, 595
NlaIV	GGNNCC	4 cut(s)	52, 223, 711, 743
NmuCI	GTSAC	2 cut(s)	190, 665
NruI	TCGCGA	1 cut(s)	722
PaqCI	CACCTGC	1 cut(s)	35
PcsI	WCGNNNNNNNCGW	2 cut(s)	554, 631
PdiI	GCCGGC	1 cut(s)	226
PkrI	GCNGC	5 cut(s)	50, 239, 552, 589, 714
PluTI	GGCGCC	1 cut(s)	225
Ppu21I	YACGTR	1 cut(s)	558
PspFI	CCCAGC	1 cut(s)	30
PspN4I	GGNNCC	4 cut(s)	52, 223, 711, 743
PspPI	GGNCC	1 cut(s)	518
PsuI	RGATCY	1 cut(s)	73
RruI	TCGCGA	1 cut(s)	722
RsaI	GTAC	1 cut(s)	743
RsaNI	GTAC	1 cut(s)	742
RseI	CAYNNNNRTG	1 cut(s)	578
SaqAI	TTAA	3 cut(s)	204, 615, 684
SatI	GCNGC	5 cut(s)	49, 238, 551, 588, 713
Sau3AI	GATC	3 cut(s)	61, 73, 103
Sau96I	GGNCC	1 cut(s)	518
ScrFI	CCNGG	2 cut(s)	538, 746
SduI	GDGCHC	1 cut(s)	86
SfoI	GGCGCC	1 cut(s)	223
SinI	GGWCC	1 cut(s)	518
SmiMI	CAYNNNNRTG	1 cut(s)	578
SmlI	CTYRAG	1 cut(s)	355
SmoI	CTYRAG	1 cut(s)	355
Sse9I	AATT	1 cut(s)	330
SsiI	CCGC	4 cut(s)	48, 184, 707, 713
SspDI	GGCGCC	1 cut(s)	221
SspMI	CTAG	1 cut(s)	260
StyD4I	CCNGG	2 cut(s)	536, 744
TaaI	ACNGT	5 cut(s)	59, 437, 522, 627, 665
TaiI	ACGT	5 cut(s)	21, 150, 447, 560, 737
TaqI	TCGA	2 cut(s)	161, 200
TasI	AATT	1 cut(s)	330
TauI	GCSGC	2 cut(s)	51, 715
Tru1I	TTAA	3 cut(s)	204, 615, 684
Tru9I	TTAA	3 cut(s)	204, 615, 684
TscAI	CASTG	2 cut(s)	64, 408
TseFI	GTSAC	2 cut(s)	190, 665
TseI	GCWGC	3 cut(s)	237, 550, 587
Tsp45I	GTSAC	2 cut(s)	190, 665
TspDTI	ATGAA	2 cut(s)	332, 339
TspGWI	ACGGA	1 cut(s)	102
TspRI	CASTG	2 cut(s)	64, 408
VneI	GTGCAC	1 cut(s)	82
VpaK11BI	GGWCC	1 cut(s)	518
XagI	CCTNNNNNAGG	1 cut(s)	295
XmiI	GTMKAC	2 cut(s)	570, 643
XspI	CTAG	1 cut(s)	260
ZraI	GACGTC	1 cut(s)	19

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.