Rh7DG343400

peroxisome organization

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0001014
Physical Location & Seq
Forward (+)
45332756 .. 45336814
4059 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG343400.1

Sequence Viewer

Length: 921 bp
ATGTCGCCGGACTGCGACGTCTGCACCTGCTGCGCATGCCAGAATGGCGACTCCAACGGTGATCACGCCGAAGATCTGGTGTGCGCGCATTACTGGAAATCCTATCCCTCTCCGTCGTCGTTTTGCTATTCCTCTTCGGTCAAATACGTTCCTGTGCCATCGAGCGATTCCAAGAAGCTACGGCGGGTCGTGACTGCTTTGATTAAGGGTTTCACTATCGGCGCCGGCCTCAAAGGCGGCCTCGCCGTCTTCACCATCCTAGCTAGACTCAGAAAGAGAAAGCTCTTAGCCTCTCTCAGGACTGAGGGTGCGATTATGAATAATGAAGCAATTGTTGCTGTTTTGAAGGAGACCTTGAGATATGGTCTGTTTCTTGGGACTTTTGCAATTGTTGCTGATTTGTTTCAGTGGATAAGATTATTACTTCTTTGGGAGGTCACCGTAGGCATGACAGCTAAGTGGAGGGCTTTGTTAGCAGGGCTTATAGCAGGACCGTCTATGCTTCTTACCGGGCATAACACGCAGCATACGAGCTTGGCTGTCTACATACTTATGAGTGCTGCCGTGTTGGCCACGCGTTGTGGGATTAAAAGCAAACGGTTTGGTCGTGTTTGTAGACCTCTCACTTGGAAGCACGGTGACATTTTCCTTATGTGTCTCTCCTCTTCGCAAATTCTAAGTGCACCATCATATGGGAAATCTGTAGTTGGGTGGGATGTGAGCTATGGAGCTGAATTTGTTCCTGTTCCTGACTCTATACTGATCATTCAAACAGCCACAAAGATGACTCCATCTGATGAACCATTAAAAGGGATTTCACAGTTTGTCGGAGCTTCAACAGGAACTTGGAATCTTAAAATCCGTGTCAAAGACACACTAAGTGATGGTCATGGTCACAATTCTCCTCCTCCGAGAGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TMEM135_C_rich

Protein Analysis

306

Amino Acids

33.16

Weight (kDa)

9.37

Isoelectric Point (pI)

39.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GOLD_PATL1_C PF25099 234 - 269 5.2e-06 Patellin-1-like, C-terminal GOLD domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 35
AasI GACNNNNNNGTC 1 cut(s) 17
AatII GACGTC 1 cut(s) 21
Acc16I TGCGCA 1 cut(s) 34
Acc36I ACCTGC 1 cut(s) 35
AccB1I GGYRCC 1 cut(s) 221
AccB7I CCANNNNNTGG 1 cut(s) 692
AccI GTMKAC 2 cut(s) 543, 616
AccII CGCG 2 cut(s) 86, 577
AciI CCGC 2 cut(s) 184, 237
AcoI YGGCCR 1 cut(s) 570
AcsI RAATTY 2 cut(s) 672, 734
AcyI GRCGYC 2 cut(s) 18, 222
AdeI CACNNNGTG 1 cut(s) 881
AfiI CCNNNNNNNGG 3 cut(s) 297, 692, 809
AflIII ACRYGT 1 cut(s) 575
AgsI TTSAA 3 cut(s) 346, 770, 837
AluBI AGCT 9 cut(s) 178, 263, 283, 455, 534, 723, 731, 833, 917
AluI AGCT 9 cut(s) 178, 263, 283, 455, 534, 723, 731, 833, 917
Alw21I GWGCWC 1 cut(s) 685
Alw26I GTCTC 2 cut(s) 344, 662
Alw44I GTGCAC 1 cut(s) 681
AoxI GGCC 3 cut(s) 226, 238, 570
ApaLI GTGCAC 1 cut(s) 681
ApeKI GCWGC 3 cut(s) 30, 523, 560
ApoI RAATTY 2 cut(s) 672, 734
Asp700I GAANNNNTTC 1 cut(s) 738
AspLEI GCGC 4 cut(s) 35, 86, 88, 224
AspS9I GGNCC 1 cut(s) 491
AsuC2I CCSGG 1 cut(s) 511
AsuHPI GGTGA 4 cut(s) 71, 244, 430, 650
AvaII GGWCC 1 cut(s) 491
BaeGI GKGCMC 1 cut(s) 685
BalI TGGCCA 1 cut(s) 572
BanI GGYRCC 1 cut(s) 221
BbsI GAAGAC 1 cut(s) 241
Bbv12I GWGCWC 1 cut(s) 685
BbvI GCAGC 3 cut(s) 17, 535, 547
BccI CCATC 5 cut(s) 166, 263, 694, 799, 878
BceAI ACGGC 3 cut(s) 197, 230, 548
BclI TGATCA 2 cut(s) 61, 762
BcnI CCSGG 1 cut(s) 511
BcoDI GTCTC 2 cut(s) 344, 662
BfaI CTAG 2 cut(s) 260, 264
BfmI CTRYAG 1 cut(s) 702
BfoI RGCGCY 1 cut(s) 225
BfuAI ACCTGC 1 cut(s) 35
BglI GCCNNNNNGGC 3 cut(s) 45, 234, 569
BglII AGATCT 1 cut(s) 73
BisI GCNGC 4 cut(s) 31, 238, 524, 561
BlsI GCNGC 4 cut(s) 32, 239, 525, 562
Bme1390I CCNGG 1 cut(s) 511
Bme18I GGWCC 1 cut(s) 491
BmgT120I GGNCC 1 cut(s) 491
BmiI GGNNCC 1 cut(s) 223
BmrFI CCNGG 1 cut(s) 511
BpiI GAAGAC 1 cut(s) 241
BpuEI CTTGAG 1 cut(s) 376
BpuMI CCSGG 1 cut(s) 511
BsaHI GRCGYC 2 cut(s) 18, 222
BsaI GGTCTC 1 cut(s) 344
Bsc4I CCNNNNNNNGG 3 cut(s) 297, 692, 809
Bse118I RCCGGY 1 cut(s) 224
Bse1I ACTGG 1 cut(s) 98
BseGI GGATG 2 cut(s) 255, 721
BseLI CCNNNNNNNGG 3 cut(s) 297, 692, 809
BseMII CTCAG 3 cut(s) 283, 294, 310
BseNI ACTGG 1 cut(s) 98
BsePI GCGCGC 1 cut(s) 84
BseRI GAGGAG 3 cut(s) 652, 894, 897
BseSI GKGCMC 1 cut(s) 685
BseXI GCAGC 3 cut(s) 17, 535, 547
BsgI GTGCAG 1 cut(s) 7
Bsh1236I CGCG 2 cut(s) 86, 577
BshFI GGCC 3 cut(s) 228, 240, 572
BshNI GGYRCC 1 cut(s) 221
BsiHKAI GWGCWC 1 cut(s) 685
BsiSI CCGG 3 cut(s) 8, 225, 510
BslFI GGGAC 1 cut(s) 391
BslI CCNNNNNNNGG 3 cut(s) 297, 692, 809
BsmAI GTCTC 2 cut(s) 344, 662
BsmFI GGGAC 1 cut(s) 391
BsnI GGCC 3 cut(s) 228, 240, 572
Bso31I GGTCTC 1 cut(s) 344
Bsp1286I GDGCHC 1 cut(s) 685
Bsp143I GATC 3 cut(s) 61, 73, 762
BspACI CCGC 2 cut(s) 184, 237
BspANI GGCC 3 cut(s) 228, 240, 572
BspCNI CTCAG 3 cut(s) 282, 295, 309
BspFNI CGCG 2 cut(s) 86, 577
BspLI GGNNCC 1 cut(s) 223
BspMI ACCTGC 1 cut(s) 35
BspT107I GGYRCC 1 cut(s) 221
BspTNI GGTCTC 1 cut(s) 344
BsrFI RCCGGY 1 cut(s) 224
BsrI ACTGG 1 cut(s) 98
BssAI RCCGGY 1 cut(s) 224
BssHII GCGCGC 1 cut(s) 84
BssMI GATC 3 cut(s) 61, 73, 762
BssNI GRCGYC 2 cut(s) 18, 222
Bst4CI ACNGT 6 cut(s) 59, 442, 495, 600, 638, 822
Bst6I CTCTTC 2 cut(s) 139, 670
BstACI GRCGYC 2 cut(s) 18, 222
BstAPI GCANNNNNTGC 3 cut(s) 30, 335, 392
BstC8I GCNNGC 3 cut(s) 37, 86, 226
BstDEI CTNAG 7 cut(s) 269, 286, 296, 303, 456, 677, 878
BstEII GGTNACC 1 cut(s) 436
BstENI CCTNNNNNAGG 1 cut(s) 295
BstF5I GGATG 2 cut(s) 255, 721
BstFNI CGCG 2 cut(s) 86, 577
BstH2I RGCGCY 1 cut(s) 225
BstHHI GCGC 4 cut(s) 35, 86, 88, 224
BstKTI GATC 3 cut(s) 64, 76, 765
BstMAI GTCTC 2 cut(s) 344, 662
BstMBI GATC 3 cut(s) 61, 73, 762
BstNSI RCATGY 1 cut(s) 39
BstPI GGTNACC 1 cut(s) 436
BstSCI CCNGG 1 cut(s) 509
BstSFI CTRYAG 1 cut(s) 702
BstSLI GKGCMC 1 cut(s) 685
BstUI CGCG 2 cut(s) 86, 577
BstV1I GCAGC 3 cut(s) 17, 535, 547
BstV2I GAAGAC 1 cut(s) 241
BstX2I RGATCY 1 cut(s) 73
BstYI RGATCY 1 cut(s) 73
BsuRI GGCC 3 cut(s) 228, 240, 572
BtsCI GGATG 2 cut(s) 255, 721
BtsIMutI CAGTG 1 cut(s) 413
BveI ACCTGC 1 cut(s) 35
Cac8I GCNNGC 3 cut(s) 37, 86, 226
CfoI GCGC 4 cut(s) 35, 86, 88, 224
Cfr10I RCCGGY 1 cut(s) 224
Cfr13I GGNCC 1 cut(s) 491
CviAII CATG 3 cut(s) 36, 448, 890
DdeI CTNAG 7 cut(s) 269, 286, 296, 303, 456, 677, 878
DinI GGCGCC 1 cut(s) 223
DpnI GATC 3 cut(s) 63, 75, 764
DpnII GATC 3 cut(s) 61, 73, 762
DraIII CACNNNGTG 1 cut(s) 881
DrdI GACNNNNNNGTC 1 cut(s) 17
DseDI GACNNNNNNGTC 1 cut(s) 17
EaeI YGGCCR 1 cut(s) 570
Eam1104I CTCTTC 2 cut(s) 139, 670
EarI CTCTTC 2 cut(s) 139, 670
Eco31I GGTCTC 1 cut(s) 344
Eco47I GGWCC 1 cut(s) 491
Eco91I GGTNACC 1 cut(s) 436
EcoNI CCTNNNNNAGG 1 cut(s) 295
EcoO65I GGTNACC 1 cut(s) 436
EgeI GGCGCC 1 cut(s) 223
EheI GGCGCC 1 cut(s) 223
FaeI CATG 3 cut(s) 39, 451, 893
FalI AAGNNNNNCTT 2 cut(s) 338, 370
FaqI GGGAC 1 cut(s) 391
FatI CATG 3 cut(s) 35, 447, 889
FauI CCCGC 1 cut(s) 177
FauNDI CATATG 1 cut(s) 691
FbaI TGATCA 2 cut(s) 61, 762
FblI GTMKAC 2 cut(s) 543, 616
Fnu4HI GCNGC 4 cut(s) 31, 238, 524, 561
FokI GGATG 2 cut(s) 242, 728
Fsp4HI GCNGC 4 cut(s) 31, 238, 524, 561
FspBI CTAG 2 cut(s) 260, 264
FspI TGCGCA 1 cut(s) 34
GlaI GCGC 4 cut(s) 34, 85, 87, 223
GluI GCNGC 4 cut(s) 31, 238, 524, 561
HaeII RGCGCY 1 cut(s) 225
HaeIII GGCC 3 cut(s) 228, 240, 572
HapII CCGG 3 cut(s) 8, 225, 510
HhaI GCGC 4 cut(s) 35, 86, 88, 224
Hin1I GRCGYC 2 cut(s) 18, 222
Hin1II CATG 3 cut(s) 39, 451, 893
Hin6I GCGC 4 cut(s) 33, 84, 86, 222
HinP1I GCGC 4 cut(s) 33, 84, 86, 222
HinfI GANTC 6 cut(s) 50, 167, 267, 752, 787, 850
HpaII CCGG 3 cut(s) 8, 225, 510
HphI GGTGA 4 cut(s) 71, 244, 430, 650
Hpy166II GTNNAC 3 cut(s) 544, 617, 683
Hpy188I TCNGA 4 cut(s) 272, 796, 830, 912
Hpy188III TCNNGA 3 cut(s) 190, 298, 749
Hpy8I GTNNAC 3 cut(s) 544, 617, 683
Hpy99I CGWCG 3 cut(s) 20, 118, 121
HpyAV CCTTC 1 cut(s) 340
HpyCH4III ACNGT 6 cut(s) 59, 442, 495, 600, 638, 822
HpyCH4IV ACGT 2 cut(s) 18, 147
HpyCH4V TGCA 3 cut(s) 24, 386, 683
HpyF3I CTNAG 7 cut(s) 269, 286, 296, 303, 456, 677, 878
HpySE526I ACGT 2 cut(s) 18, 147
Hsp92I GRCGYC 2 cut(s) 18, 222
Hsp92II CATG 3 cut(s) 39, 451, 893
HspAI GCGC 4 cut(s) 33, 84, 86, 222
KasI GGCGCC 1 cut(s) 221
KroI GCCGGC 1 cut(s) 224
KroNI GCCGGC 1 cut(s) 226
Ksp22I TGATCA 2 cut(s) 61, 762
Kzo9I GATC 3 cut(s) 61, 73, 762
LmnI GCTCC 2 cut(s) 728, 830
Lsp1109I GCAGC 3 cut(s) 17, 535, 547
MaeI CTAG 2 cut(s) 260, 264
MaeII ACGT 2 cut(s) 18, 147
MaeIII GTNAC 4 cut(s) 190, 436, 638, 893
MalI GATC 3 cut(s) 63, 75, 764
MboI GATC 3 cut(s) 61, 73, 762
MboII GAAGA 4 cut(s) 83, 126, 241, 657
MfeI CAATTG 2 cut(s) 330, 387
MflI RGATCY 1 cut(s) 73
MhlI GDGCHC 1 cut(s) 685
MlsI TGGCCA 1 cut(s) 572
MluCI AATT 5 cut(s) 330, 387, 672, 734, 898
MluI ACGCGT 1 cut(s) 575
MluNI TGGCCA 1 cut(s) 572
Mly113I GGCGCC 1 cut(s) 222
MlyI GAGTC 4 cut(s) 44, 261, 746, 781
MmeI TCCRAC 2 cut(s) 78, 808
Mox20I TGGCCA 1 cut(s) 572
MroNI GCCGGC 1 cut(s) 224
MroXI GAANNNNTTC 1 cut(s) 738
MscI TGGCCA 1 cut(s) 572
MseI TTAA 5 cut(s) 204, 588, 806, 855, 919
MslI CAYNNNNRTG 2 cut(s) 551, 782
Msp20I TGGCCA 1 cut(s) 572
MspI CCGG 3 cut(s) 8, 225, 510
MspR9I CCNGG 1 cut(s) 511
MunI CAATTG 2 cut(s) 330, 387
MvnI CGCG 2 cut(s) 86, 577
NaeI GCCGGC 1 cut(s) 226
NarI GGCGCC 1 cut(s) 222
NciI CCSGG 1 cut(s) 511
NdeI CATATG 1 cut(s) 691
NdeII GATC 3 cut(s) 61, 73, 762
NgoMIV GCCGGC 1 cut(s) 224
NlaIII CATG 3 cut(s) 39, 451, 893
NlaIV GGNNCC 1 cut(s) 223
NmuCI GTSAC 4 cut(s) 190, 436, 638, 893
NsbI TGCGCA 1 cut(s) 34
NspI RCATGY 1 cut(s) 39
PaeI GCATGC 1 cut(s) 39
PaqCI CACCTGC 1 cut(s) 35
PauI GCGCGC 1 cut(s) 84
PcsI WCGNNNNNNNCGW 2 cut(s) 527, 604
PdiI GCCGGC 1 cut(s) 226
PdmI GAANNNNTTC 1 cut(s) 738
PfeI GAWTC 2 cut(s) 167, 850
PflMI CCANNNNNTGG 1 cut(s) 692
PkrI GCNGC 4 cut(s) 32, 239, 525, 562
PleI GAGTC 4 cut(s) 44, 261, 746, 781
PluTI GGCGCC 1 cut(s) 225
PpsI GAGTC 4 cut(s) 44, 261, 746, 781
PspEI GGTNACC 1 cut(s) 436
PspN4I GGNNCC 1 cut(s) 223
PspPI GGNCC 1 cut(s) 491
PsuI RGATCY 1 cut(s) 73
PteI GCGCGC 1 cut(s) 84
RseI CAYNNNNRTG 2 cut(s) 551, 782
SaqAI TTAA 5 cut(s) 204, 588, 806, 855, 919
SatI GCNGC 4 cut(s) 31, 238, 524, 561
Sau3AI GATC 3 cut(s) 61, 73, 762
Sau96I GGNCC 1 cut(s) 491
SchI GAGTC 4 cut(s) 44, 261, 746, 781
ScrFI CCNGG 1 cut(s) 511
SduI GDGCHC 1 cut(s) 685
SfcI CTRYAG 1 cut(s) 702
SfoI GGCGCC 1 cut(s) 223
SinI GGWCC 1 cut(s) 491
SmiMI CAYNNNNRTG 2 cut(s) 551, 782
SmlI CTYRAG 1 cut(s) 355
SmoI CTYRAG 1 cut(s) 355
SphI GCATGC 1 cut(s) 39
Sse9I AATT 5 cut(s) 330, 387, 672, 734, 898
SsiI CCGC 2 cut(s) 184, 237
SspDI GGCGCC 1 cut(s) 221
SspMI CTAG 2 cut(s) 260, 264
StyD4I CCNGG 1 cut(s) 509
TaaI ACNGT 6 cut(s) 59, 442, 495, 600, 638, 822
TaiI ACGT 2 cut(s) 21, 150
TaqI TCGA 1 cut(s) 161
TaqII GACCGA 1 cut(s) 127
TasI AATT 5 cut(s) 330, 387, 672, 734, 898
TauI GCSGC 1 cut(s) 240
TfiI GAWTC 2 cut(s) 167, 850
Tru1I TTAA 5 cut(s) 204, 588, 806, 855, 919
Tru9I TTAA 5 cut(s) 204, 588, 806, 855, 919
TscAI CASTG 1 cut(s) 413
TseFI GTSAC 4 cut(s) 190, 436, 638, 893
TseI GCWGC 3 cut(s) 30, 523, 560
Tsp45I GTSAC 4 cut(s) 190, 436, 638, 893
TspDTI ATGAA 3 cut(s) 332, 339, 813
TspGWI ACGGA 2 cut(s) 102, 851
TspRI CASTG 1 cut(s) 413
Van91I CCANNNNNTGG 1 cut(s) 692
VneI GTGCAC 1 cut(s) 681
VpaK11BI GGWCC 1 cut(s) 491
XagI CCTNNNNNAGG 1 cut(s) 295
XapI RAATTY 2 cut(s) 672, 734
XceI RCATGY 1 cut(s) 39
XmiI GTMKAC 2 cut(s) 543, 616
XmnI GAANNNNTTC 1 cut(s) 738
XspI CTAG 2 cut(s) 260, 264
ZraI GACGTC 1 cut(s) 19
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.