Rh4AG152700

peroxisome organization

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0001014
Physical Location & Seq
Reverse (-)
38622229 .. 38623056
828 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG152700.1

Sequence Viewer

Length: 606 bp
ATGTTGCCGGACGGCGATGTCTGCACCTACTGCGCCAGCGAGAATGGCGGCTCCAACGGTGATCACGCCGAAGGTCTGGTGTGCGCGCATTACAGGAAATCTGATCCCTCTCAGTCGTCGTTTTGCTATTCCTCTTCACTCAAATACGTTCCTGTGCCGTCGAGCGATTCAGAGAAGCTACAACGGGTCATGACTGCTTCGATTAAGGGTTTTACCATTGGCGCTGGCCTCAAAGGTGGCCTCGCAGTCTTCTCCATCCTAGCTAGACTCAGAAAGAGAAAGCTCTTAGCCTCTCTCAGGACTGAGGGTGCGATTACGAATAATGAAGCAATTGTTACTGTTTTGAAGGAGACCTTGAGATATGGTCTGTTTCTTGGGATTTTTGCAGGCATATTTGTTTCAGTGGATGAGATTATTGCTTCTTTGGGAGGCCACCGTAGGCATGTTCCTTGTTCTTTTATATTCAGCTTCGCATGGACAGCTAAGTGGAGGGCTTTGTTAGCAGGGCTTATAGCAGGACTGTCTATGCTTCTTACCGGGCATAACACGCAGCATACGAGCTTGGCCGTATACATACTTATGCGTGCTACAGTGTTGTGGGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TMEM135_C_rich

Protein Analysis

201

Amino Acids

21.72

Weight (kDa)

9.18

Isoelectric Point (pI)

33.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 17
AccI GTMKAC 1 cut(s) 570
AccII CGCG 1 cut(s) 86
AciI CCGC 1 cut(s) 48
AclWI GGATC 1 cut(s) 98
AcoI YGGCCR 1 cut(s) 564
AfiI CCNNNNNNNGG 1 cut(s) 297
AgsI TTSAA 1 cut(s) 346
AluBI AGCT 6 cut(s) 178, 263, 283, 468, 482, 561
AluI AGCT 6 cut(s) 178, 263, 283, 468, 482, 561
Alw26I GTCTC 1 cut(s) 344
AlwI GGATC 1 cut(s) 98
AoxI GGCC 4 cut(s) 226, 238, 430, 564
ApeKI GCWGC 1 cut(s) 550
AspLEI GCGC 4 cut(s) 35, 86, 88, 224
AsuC2I CCSGG 1 cut(s) 538
AsuHPI GGTGA 1 cut(s) 71
BbsI GAAGAC 1 cut(s) 241
BbvI GCAGC 1 cut(s) 562
BccI CCATC 1 cut(s) 263
BceAI ACGGC 3 cut(s) 28, 142, 551
BclI TGATCA 1 cut(s) 61
BcnI CCSGG 1 cut(s) 538
BcoDI GTCTC 1 cut(s) 344
BfaI CTAG 2 cut(s) 260, 264
BfmI CTRYAG 1 cut(s) 588
BfoI RGCGCY 1 cut(s) 225
BisI GCNGC 2 cut(s) 49, 551
BlsI GCNGC 2 cut(s) 50, 552
Bme1390I CCNGG 1 cut(s) 538
BmiI GGNNCC 1 cut(s) 52
BmrFI CCNGG 1 cut(s) 538
BpiI GAAGAC 1 cut(s) 241
BpuEI CTTGAG 1 cut(s) 376
BpuMI CCSGG 1 cut(s) 538
BsaI GGTCTC 1 cut(s) 344
Bsc4I CCNNNNNNNGG 1 cut(s) 297
BseGI GGATG 2 cut(s) 255, 412
BseLI CCNNNNNNNGG 1 cut(s) 297
BseMII CTCAG 4 cut(s) 125, 283, 294, 310
BsePI GCGCGC 1 cut(s) 84
BseXI GCAGC 1 cut(s) 562
BsgI GTGCAG 1 cut(s) 7
Bsh1236I CGCG 1 cut(s) 86
BshFI GGCC 4 cut(s) 228, 240, 432, 566
BsiSI CCGG 2 cut(s) 8, 537
BslI CCNNNNNNNGG 1 cut(s) 297
BsmAI GTCTC 1 cut(s) 344
BsnI GGCC 4 cut(s) 228, 240, 432, 566
Bso31I GGTCTC 1 cut(s) 344
Bsp143I GATC 2 cut(s) 61, 103
BspACI CCGC 1 cut(s) 48
BspANI GGCC 4 cut(s) 228, 240, 432, 566
BspCNI CTCAG 4 cut(s) 124, 282, 295, 309
BspFNI CGCG 1 cut(s) 86
BspHI TCATGA 1 cut(s) 189
BspLI GGNNCC 1 cut(s) 52
BspPI GGATC 1 cut(s) 98
BspTNI GGTCTC 1 cut(s) 344
BssHII GCGCGC 1 cut(s) 84
BssMI GATC 2 cut(s) 61, 103
BssNAI GTATAC 1 cut(s) 571
Bst1107I GTATAC 1 cut(s) 571
Bst4CI ACNGT 5 cut(s) 59, 340, 437, 522, 592
Bst6I CTCTTC 1 cut(s) 139
BstAPI GCANNNNNTGC 1 cut(s) 30
BstC8I GCNNGC 5 cut(s) 37, 86, 226, 388, 585
BstDEI CTNAG 6 cut(s) 111, 269, 286, 296, 303, 483
BstENI CCTNNNNNAGG 1 cut(s) 295
BstF5I GGATG 2 cut(s) 255, 412
BstFNI CGCG 1 cut(s) 86
BstH2I RGCGCY 1 cut(s) 225
BstHHI GCGC 4 cut(s) 35, 86, 88, 224
BstKTI GATC 2 cut(s) 64, 106
BstMAI GTCTC 1 cut(s) 344
BstMBI GATC 2 cut(s) 61, 103
BstMWI GCNNNNNNNGC 6 cut(s) 21, 30, 45, 479, 500, 547
BstNSI RCATGY 1 cut(s) 446
BstSCI CCNGG 1 cut(s) 536
BstSFI CTRYAG 1 cut(s) 588
BstUI CGCG 1 cut(s) 86
BstV1I GCAGC 1 cut(s) 562
BstV2I GAAGAC 1 cut(s) 241
BstZ17I GTATAC 1 cut(s) 571
BsuRI GGCC 4 cut(s) 228, 240, 432, 566
BtgZI GCGATG 1 cut(s) 30
BtsCI GGATG 2 cut(s) 255, 412
BtsIMutI CAGTG 2 cut(s) 408, 597
Cac8I GCNNGC 5 cut(s) 37, 86, 226, 388, 585
CciI TCATGA 1 cut(s) 189
CfoI GCGC 4 cut(s) 35, 86, 88, 224
CviAII CATG 3 cut(s) 190, 443, 474
DdeI CTNAG 6 cut(s) 111, 269, 286, 296, 303, 483
DpnI GATC 2 cut(s) 63, 105
DpnII GATC 2 cut(s) 61, 103
DrdI GACNNNNNNGTC 1 cut(s) 17
DseDI GACNNNNNNGTC 1 cut(s) 17
EaeI YGGCCR 1 cut(s) 564
Eam1104I CTCTTC 1 cut(s) 139
EarI CTCTTC 1 cut(s) 139
Eco31I GGTCTC 1 cut(s) 344
EcoNI CCTNNNNNAGG 1 cut(s) 295
FaeI CATG 3 cut(s) 193, 446, 477
FalI AAGNNNNNCTT 2 cut(s) 338, 370
FatI CATG 3 cut(s) 189, 442, 473
FbaI TGATCA 1 cut(s) 61
FblI GTMKAC 1 cut(s) 570
Fnu4HI GCNGC 2 cut(s) 49, 551
FokI GGATG 2 cut(s) 242, 419
Fsp4HI GCNGC 2 cut(s) 49, 551
FspBI CTAG 2 cut(s) 260, 264
GlaI GCGC 4 cut(s) 34, 85, 87, 223
GluI GCNGC 2 cut(s) 49, 551
HaeII RGCGCY 1 cut(s) 225
HaeIII GGCC 4 cut(s) 228, 240, 432, 566
HapII CCGG 2 cut(s) 8, 537
HhaI GCGC 4 cut(s) 35, 86, 88, 224
Hin1II CATG 3 cut(s) 193, 446, 477
Hin6I GCGC 4 cut(s) 33, 84, 86, 222
HinP1I GCGC 4 cut(s) 33, 84, 86, 222
HinfI GANTC 2 cut(s) 167, 267
HpaII CCGG 2 cut(s) 8, 537
HphI GGTGA 1 cut(s) 71
Hpy166II GTNNAC 1 cut(s) 571
Hpy188I TCNGA 3 cut(s) 103, 172, 272
Hpy188III TCNNGA 2 cut(s) 190, 298
Hpy8I GTNNAC 1 cut(s) 571
Hpy99I CGWCG 2 cut(s) 121, 163
HpyAV CCTTC 2 cut(s) 65, 340
HpyCH4III ACNGT 5 cut(s) 59, 340, 437, 522, 592
HpyCH4IV ACGT 1 cut(s) 147
HpyCH4V TGCA 2 cut(s) 24, 386
HpyF10VI GCNNNNNNNGC 6 cut(s) 21, 30, 45, 479, 500, 547
HpyF3I CTNAG 6 cut(s) 111, 269, 286, 296, 303, 483
HpySE526I ACGT 1 cut(s) 147
Hsp92II CATG 3 cut(s) 193, 446, 477
HspAI GCGC 4 cut(s) 33, 84, 86, 222
Ksp22I TGATCA 1 cut(s) 61
Kzo9I GATC 2 cut(s) 61, 103
LmnI GCTCC 1 cut(s) 56
Lsp1109I GCAGC 1 cut(s) 562
MaeI CTAG 2 cut(s) 260, 264
MaeII ACGT 1 cut(s) 147
MaeIII GTNAC 1 cut(s) 334
MalI GATC 2 cut(s) 63, 105
MboI GATC 2 cut(s) 61, 103
MboII GAAGA 2 cut(s) 126, 241
MfeI CAATTG 1 cut(s) 330
MluCI AATT 1 cut(s) 330
MlyI GAGTC 1 cut(s) 261
MmeI TCCRAC 1 cut(s) 78
MnlI CCTC 8 cut(s) 118, 142, 239, 251, 298, 301, 422, 483
MseI TTAA 2 cut(s) 204, 604
MslI CAYNNNNRTG 1 cut(s) 578
MspI CCGG 2 cut(s) 8, 537
MspR9I CCNGG 1 cut(s) 538
MunI CAATTG 1 cut(s) 330
MvnI CGCG 1 cut(s) 86
MwoI GCNNNNNNNGC 6 cut(s) 21, 30, 45, 479, 500, 547
NciI CCSGG 1 cut(s) 538
NdeII GATC 2 cut(s) 61, 103
NlaIII CATG 3 cut(s) 193, 446, 477
NlaIV GGNNCC 1 cut(s) 52
NspI RCATGY 1 cut(s) 446
PagI TCATGA 1 cut(s) 189
PauI GCGCGC 1 cut(s) 84
PcsI WCGNNNNNNNCGW 1 cut(s) 554
PfeI GAWTC 1 cut(s) 167
PkrI GCNGC 2 cut(s) 50, 552
PleI GAGTC 1 cut(s) 261
PpsI GAGTC 1 cut(s) 261
PspN4I GGNNCC 1 cut(s) 52
PteI GCGCGC 1 cut(s) 84
RseI CAYNNNNRTG 1 cut(s) 578
SaqAI TTAA 2 cut(s) 204, 604
SatI GCNGC 2 cut(s) 49, 551
Sau3AI GATC 2 cut(s) 61, 103
SchI GAGTC 1 cut(s) 261
ScrFI CCNGG 1 cut(s) 538
SfcI CTRYAG 1 cut(s) 588
SmiMI CAYNNNNRTG 1 cut(s) 578
SmlI CTYRAG 1 cut(s) 355
SmoI CTYRAG 1 cut(s) 355
Sse9I AATT 1 cut(s) 330
SsiI CCGC 1 cut(s) 48
SspMI CTAG 2 cut(s) 260, 264
StyD4I CCNGG 1 cut(s) 536
TaaI ACNGT 5 cut(s) 59, 340, 437, 522, 592
TaiI ACGT 1 cut(s) 150
TaqI TCGA 2 cut(s) 161, 200
TasI AATT 1 cut(s) 330
TauI GCSGC 1 cut(s) 51
TfiI GAWTC 1 cut(s) 167
Tru1I TTAA 2 cut(s) 204, 604
Tru9I TTAA 2 cut(s) 204, 604
TscAI CASTG 2 cut(s) 408, 597
TseI GCWGC 1 cut(s) 550
TspDTI ATGAA 1 cut(s) 339
TspRI CASTG 2 cut(s) 408, 597
XagI CCTNNNNNAGG 1 cut(s) 295
XceI RCATGY 1 cut(s) 446
XmiI GTMKAC 1 cut(s) 570
XspI CTAG 2 cut(s) 260, 264
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.