Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8298683.1

Orthogroup ID

OG0001014

Physical Location & Seq

Genomic Coordinates Reverse (-)

137 .. 554

Gene Structure 418 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8298683.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

atgtgtaatgtaccaatggtagcaatggggacgttcccgactggcctggccttggctattgagaagaaaagcaggcgtattgagatatcactctactgtctcgctcgagcgattgagagctttttcacctgcatggctgatactggatacttgccacaaacaaaaaaattgaagagagctgacgtggtgatctttagcttatcaaccgccatcataatgcattgctatgcagaggagagggaagtgttcagatccaagtacttgaatgttcttgactgggtttttggcgtcccacctcctccttgtgaaaccccccgctgcaaaaagagttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TMEM135_C_rich

Protein Analysis

110

Amino Acids

12.44

Weight (kDa)

8.98

Isoelectric Point (pI)

60.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001014)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G34630 AT1G34630 AT1G34630 AT1G34630 AT1G34630
fragaria_vesca	FvH4_5g37331 FvH4_5g37331
malus_domestica	MD08G1182800.v1.1
prunus_persica	Prupe.1G517000_v2.0.a1 Prupe.1G517000_v2.0.a1
pyrus_communis	pycom08g15660
rosa_chinensis	RchiOBHm_Chr3g0470741 RchiOBHm_Chr4g0408951 RchiOBHm_Chr7g0238981
rosa_laevigata	RLG00000000793 RLG00000007867 RLG00000014356 RLG00000015234 RLG00000016579 RLG00000020758
rosa_multiflora	Rmu_co8298683.1_g000001 Rmu_sc0002152.1_g000014 Rmu_sc0004132.1_g000004 Rmu_sc0004879.1_g000005 Rmu_sc0005866.1_g000014 Rmu_sc0010178.1_g000001 Rmu_sc0029797.1_g000001 Rmu_sc0032697.1_g000001 Rmu_sc0034117.1_g000001 Rmu_ssc0000233.1_g000066
rosa_roxburghii	Rroxscaffold_3G00221410 Rroxscaffold_3G00221420
rosa_rugosa	Rorug03G0157600 Rorug05G0148200 Rorug05G0232900 Rorug05G0238700 Rorug07G0324200.1
rosa_samantha	Rh1BG208000 Rh1DG234700 Rh2AG003700 Rh2AG216800 Rh2DG222500 Rh3AG161900 Rh3AG329400 Rh3BG186700 Rh3CG176900 Rh3DG308000 Rh4AG125400 Rh4AG152700 Rh4BG154900 Rh4CG133600 Rh4DG112900 Rh5AG299600 Rh7AG465300 Rh7AG479200 Rh7BG451800 Rh7CG251000 Rh7CG496300 Rh7DG343400 Rh7DG463900
rosa_wichuraiana	Rw7G040000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	137
Acc36I	ACCTGC	1 cut(s)	137
AciI	CCGC	2 cut(s)	207, 316
AclWI	GGATC	1 cut(s)	246
AcyI	GRCGYC	1 cut(s)	288
AfaI	GTAC	2 cut(s)	12, 260
AfiI	CCNNNNNNNGG	1 cut(s)	52
AgsI	TTSAA	2 cut(s)	172, 265
AjiI	CACGTC	1 cut(s)	184
AjnI	CCWGG	1 cut(s)	45
AluBI	AGCT	3 cut(s)	120, 179, 198
AluI	AGCT	3 cut(s)	120, 179, 198
Alw26I	GTCTC	1 cut(s)	104
AlwI	GGATC	1 cut(s)	246
Ama87I	CYCGRG	1 cut(s)	105
AoxI	GGCC	2 cut(s)	43, 48
ApeKI	GCWGC	1 cut(s)	318
ArsI	GACNNNNNNTTYG	2 cut(s)	266, 298
AsuHPI	GGTGA	2 cut(s)	118, 199
AvaI	CYCGRG	1 cut(s)	105
BbvI	GCAGC	1 cut(s)	305
BccI	CCATC	1 cut(s)	218
BciT130I	CCWGG	1 cut(s)	47
BciVI	GTATCC	1 cut(s)	140
BcoDI	GTCTC	1 cut(s)	104
BfuAI	ACCTGC	1 cut(s)	137
BfuI	GTATCC	1 cut(s)	140
BisI	GCNGC	1 cut(s)	319
BlsI	GCNGC	1 cut(s)	320
BmcAI	AGTACT	1 cut(s)	260
Bme1390I	CCNGG	1 cut(s)	47
BmeT110I	CYCGRG	1 cut(s)	105
BmgBI	CACGTC	1 cut(s)	184
BmrFI	CCNGG	1 cut(s)	47
BmrI	ACTGGG	1 cut(s)	286
BmuI	ACTGGG	1 cut(s)	286
BsaHI	GRCGYC	1 cut(s)	288
BsaJI	CCNNGG	1 cut(s)	51
Bsc4I	CCNNNNNNNGG	1 cut(s)	52
Bse1I	ACTGG	3 cut(s)	46, 148, 281
Bse3DI	GCAATG	2 cut(s)	30, 220
BseBI	CCWGG	1 cut(s)	47
BseDI	CCNNGG	1 cut(s)	51
BseLI	CCNNNNNNNGG	1 cut(s)	52
BseMI	GCAATG	2 cut(s)	30, 220
BseNI	ACTGG	3 cut(s)	46, 148, 281
BseRI	GAGGAG	2 cut(s)	248, 288
BseXI	GCAGC	1 cut(s)	305
BshFI	GGCC	2 cut(s)	45, 50
BsiHKCI	CYCGRG	1 cut(s)	105
BslFI	GGGAC	2 cut(s)	43, 275
BslI	CCNNNNNNNGG	1 cut(s)	52
BsmAI	GTCTC	1 cut(s)	104
BsmFI	GGGAC	2 cut(s)	43, 275
BsnI	GGCC	2 cut(s)	45, 50
BsoBI	CYCGRG	1 cut(s)	105
Bsp143I	GATC	2 cut(s)	189, 251
BspACI	CCGC	2 cut(s)	207, 316
BspANI	GGCC	2 cut(s)	45, 50
BspMI	ACCTGC	1 cut(s)	137
BspPI	GGATC	1 cut(s)	246
BsrDI	GCAATG	2 cut(s)	30, 220
BsrI	ACTGG	3 cut(s)	46, 148, 281
BssECI	CCNNGG	1 cut(s)	51
BssMI	GATC	2 cut(s)	189, 251
BssNI	GRCGYC	1 cut(s)	288
BssT1I	CCWWGG	1 cut(s)	51
Bst2UI	CCWGG	1 cut(s)	47
Bst4CI	ACNGT	1 cut(s)	98
Bst6I	CTCTTC	1 cut(s)	167
BstACI	GRCGYC	1 cut(s)	288
BstC8I	GCNNGC	1 cut(s)	74
BstKTI	GATC	2 cut(s)	192, 254
BstMAI	GTCTC	1 cut(s)	104
BstMBI	GATC	2 cut(s)	189, 251
BstNI	CCWGG	1 cut(s)	47
BstSCI	CCNGG	1 cut(s)	45
BstV1I	GCAGC	1 cut(s)	305
BstX2I	RGATCY	1 cut(s)	251
BstYI	RGATCY	1 cut(s)	251
BsuI	GTATCC	1 cut(s)	140
BsuRI	GGCC	2 cut(s)	45, 50
BtrI	CACGTC	1 cut(s)	184
BveI	ACCTGC	1 cut(s)	137
Cac8I	GCNNGC	1 cut(s)	74
CseI	GACGC	1 cut(s)	277
Csp6I	GTAC	2 cut(s)	11, 259
CviAII	CATG	1 cut(s)	133
CviJI	RGCY	7 cut(s)	45, 50, 56, 120, 137, 179, 198
CviKI_1	RGCY	7 cut(s)	45, 50, 56, 120, 137, 179, 198
CviQI	GTAC	2 cut(s)	11, 259
DpnI	GATC	2 cut(s)	191, 253
DpnII	GATC	2 cut(s)	189, 251
Eam1104I	CTCTTC	1 cut(s)	167
EarI	CTCTTC	1 cut(s)	167
Eco130I	CCWWGG	1 cut(s)	51
Eco32I	GATATC	1 cut(s)	87
Eco88I	CYCGRG	1 cut(s)	105
EcoRII	CCWGG	1 cut(s)	45
EcoRV	GATATC	1 cut(s)	87
EcoT14I	CCWWGG	1 cut(s)	51
EcoT22I	ATGCAT	1 cut(s)	222
ErhI	CCWWGG	1 cut(s)	51
FaeI	CATG	1 cut(s)	136
FaiI	YATR	3 cut(s)	134, 215, 228
FaqI	GGGAC	2 cut(s)	43, 275
FatI	CATG	1 cut(s)	132
FauI	CCCGC	1 cut(s)	323
Fnu4HI	GCNGC	1 cut(s)	319
Fsp4HI	GCNGC	1 cut(s)	319
GluI	GCNGC	1 cut(s)	319
HaeIII	GGCC	2 cut(s)	45, 50
HgaI	GACGC	1 cut(s)	277
Hin1I	GRCGYC	1 cut(s)	288
Hin1II	CATG	1 cut(s)	136
HphI	GGTGA	2 cut(s)	118, 199
Hpy188I	TCNGA	1 cut(s)	251
Hpy188III	TCNNGA	2 cut(s)	37, 272
HpyCH4III	ACNGT	1 cut(s)	98
HpyCH4IV	ACGT	2 cut(s)	32, 183
HpyCH4V	TGCA	4 cut(s)	132, 220, 230, 321
HpySE526I	ACGT	2 cut(s)	32, 183
Hsp92I	GRCGYC	1 cut(s)	288
Hsp92II	CATG	1 cut(s)	136
Kzo9I	GATC	2 cut(s)	189, 251
LpnPI	CCDG	7 cut(s)	27, 32, 58, 59, 129, 142, 262
Lsp1109I	GCAGC	1 cut(s)	305
MaeII	ACGT	2 cut(s)	32, 183
MalI	GATC	2 cut(s)	191, 253
MboI	GATC	2 cut(s)	189, 251
MboII	GAAGA	2 cut(s)	76, 184
MflI	RGATCY	1 cut(s)	251
MluCI	AATT	1 cut(s)	167
MnlI	CCTC	4 cut(s)	226, 231, 306, 309
Mph1103I	ATGCAT	1 cut(s)	222
MseI	TTAA	1 cut(s)	331
MslI	CAYNNNNRTG	3 cut(s)	131, 215, 225
MspA1I	CMGCKG	1 cut(s)	318
MspR9I	CCNGG	1 cut(s)	47
MvaI	CCWGG	1 cut(s)	47
NdeII	GATC	2 cut(s)	189, 251
NlaIII	CATG	1 cut(s)	136
NsiI	ATGCAT	1 cut(s)	222
PaeR7I	CTCGAG	1 cut(s)	105
PaqCI	CACCTGC	1 cut(s)	137
PkrI	GCNGC	1 cut(s)	320
Psp6I	CCWGG	1 cut(s)	45
PspGI	CCWGG	1 cut(s)	45
PspXI	VCTCGAGB	1 cut(s)	105
PsuI	RGATCY	1 cut(s)	251
RsaI	GTAC	2 cut(s)	12, 260
RsaNI	GTAC	2 cut(s)	11, 259
RseI	CAYNNNNRTG	3 cut(s)	131, 215, 225
SaqAI	TTAA	1 cut(s)	331
SatI	GCNGC	1 cut(s)	319
Sau3AI	GATC	2 cut(s)	189, 251
ScaI	AGTACT	1 cut(s)	260
ScrFI	CCNGG	1 cut(s)	47
SetI	ASST	7 cut(s)	35, 122, 131, 181, 186, 200, 298
Sfr274I	CTCGAG	1 cut(s)	105
SlaI	CTCGAG	1 cut(s)	105
SmiMI	CAYNNNNRTG	3 cut(s)	131, 215, 225
SmlI	CTYRAG	1 cut(s)	105
SmoI	CTYRAG	1 cut(s)	105
Sse9I	AATT	1 cut(s)	167
SsiI	CCGC	2 cut(s)	207, 316
StyD4I	CCNGG	1 cut(s)	45
StyI	CCWWGG	1 cut(s)	51
TaaI	ACNGT	1 cut(s)	98
TaiI	ACGT	2 cut(s)	35, 186
TaqI	TCGA	1 cut(s)	106
TasI	AATT	1 cut(s)	167
TatI	WGTACW	1 cut(s)	258
Tru1I	TTAA	1 cut(s)	331
Tru9I	TTAA	1 cut(s)	331
TseI	GCWGC	1 cut(s)	318
XhoI	CTCGAG	1 cut(s)	105
ZrmI	AGTACT	1 cut(s)	260
Zsp2I	ATGCAT	1 cut(s)	222

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.