Rorug03G0157600

Alcohol dehydrogenase GroES-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0000167
Physical Location & Seq
Forward (+)
12989356 .. 12991789
2434 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0157600.1

Sequence Viewer

Length: 498 bp
ATGGAGATCGGCGCCGGTCACAAATCGAAGATGCCGTGCCCAAACTCCGACCACATGGAGTCGGAAAAGTCTGAAGTGACCTCCTTCACCGAGTCATTCTCCAAATACCACATACCAAAGTTGAAAGATGCTTGGCCGCAGGTGGAATCGGCTTTACAAGAGCATGGAATTTCTTACACACTCAATCTGGGTGAGCTTTACATGACTGTCTCAACCACCCCAAGGACCAAAGATCCAGACATCATTCACAGGGCTAGGGAGATTATTGTGCTTCTGTCCAAAACTACTGTTCCGACATATGTGGTAATTAAGATATTGAATGGCGATATGCATCATGACCACATCAAAACTGGGTATCAAGAAGATGGGCTTGCCACAATACATGGGATCAAGAAGGAGCGATTTGATAAACGGAGGACCAGATTCTTTGAAAACGTAAAGGACCTTGCATGCCTGATGAGTTGTCATCTGTATGTTAACGTAAGGGAAACACTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
ADH_N ADH_zinc_N

Protein Analysis

165

Amino Acids

18.94

Weight (kDa)

7.16

Isoelectric Point (pI)

52.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KH_KRR1_1st PF17903 28 - 99 1.2e-13 Krr1 KH1 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000167)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G37980 AT4G37980 AT4G37990
fragaria_vesca FvH4_1g19210 FvH4_1g19220 FvH4_1g19240 FvH4_1g19240 FvH4_1g19261 FvH4_1g19262 FvH4_1g19263 FvH4_1g19263 FvH4_1g19265 FvH4_1g19281 FvH4_1g19281 FvH4_7g07240 FvH4_7g07240 FvH4_7g07240
malus_domestica MD01G1042500.v1.1 MD01G1042600.v1.1 MD01G1042800.v1.1 MD01G1042900.v1.1 MD05G1034100.v1.1 MD10G1035900.v1.1 MD10G1036000.v1.1 MD10G1155000.v1.1 MD10G1155100.v1.1 MD10G1155200.v1.1 MD10G1155400.v1.1 MD10G1155700.v1.1 MD10G1155800.v1.1 MD15G1308800.v1.1 MD15G1308900.v1.1
prunus_persica Prupe.6G205600_v2.0.a1 Prupe.6G205700_v2.0.a1 Prupe.6G205800_v2.0.a1 Prupe.6G205900_v2.0.a1 Prupe.6G206300_v2.0.a1 Prupe.6G206800_v2.0.a1 Prupe.6G207100_v2.0.a1 Prupe.6G207200_v2.0.a1 Prupe.6G207300_v2.0.a1 Prupe.6G207400_v2.0.a1 Prupe.6G207500_v2.0.a1 Prupe.6G207600_v2.0.a1 Prupe.6G207700_v2.0.a1 Prupe.6G207900_v2.0.a1
pyrus_communis pycom01g06970 pycom01g06980 pycom01g06990 pycom05g02460 pycom08g00750 pycom10g13410 pycom15g27310 pycom15g27320
rosa_chinensis RchiOBHm_Chr1g0314861 RchiOBHm_Chr1g0345441 RchiOBHm_Chr1g0345451 RchiOBHm_Chr1g0345621 RchiOBHm_Chr1g0345751 RchiOBHm_Chr1g0345861 RchiOBHm_Chr1g0345871 RchiOBHm_Chr1g0345891 RchiOBHm_Chr2g0094851 RchiOBHm_Chr2g0110471 RchiOBHm_Chr2g0110511 RchiOBHm_Chr2g0110531 RchiOBHm_Chr2g0110541 RchiOBHm_Chr2g0110571 RchiOBHm_Chr5g0039381 RchiOBHm_Chr5g0039391 RchiOBHm_Chr6g0270311 RchiOBHm_Chr6g0270331 RchiOBHm_Chr6g0270411 RchiOBHm_Chr6g0270431
rosa_laevigata RLG00000000515 RLG00000013793 RLG00000013797 RLG00000013799 RLG00000016525 RLG00000017808 RLG00000017811 RLG00000017813 RLG00000017816 RLG00000017819 RLG00000017822 RLG00000017824 RLG00000017825 RLG00000028835
rosa_multiflora Rmu_co8225458.1_g000001 Rmu_sc0000389.1_g000006 Rmu_sc0000389.1_g000014 Rmu_sc0000389.1_g000023 Rmu_sc0001292.1_g000012 Rmu_sc0001292.1_g000026 Rmu_sc0002145.1_g000003 Rmu_sc0002329.1_g000033 Rmu_sc0002833.1_g000044 Rmu_sc0004316.1_g000012 Rmu_sc0004439.1_g000003 Rmu_sc0006422.1_g000028 Rmu_sc0009479.1_g000012 Rmu_sc0010489.1_g000009 Rmu_sc0010489.1_g000010 Rmu_sc0017837.1_g000003 Rmu_sc0032320.1_g000001
rosa_roxburghii Rroxscaffold_1G00050770 Rroxscaffold_2G00133110 Rroxscaffold_2G00133140 Rroxscaffold_2G00133200 Rroxscaffold_2G00133270 Rroxscaffold_2G00133290 Rroxscaffold_2G00133300 Rroxscaffold_2G00133350 Rroxscaffold_4G00292490 Rroxscaffold_4G00309020 Rroxscaffold_4G00331740 Rroxscaffold_4G00331800 Rroxscaffold_6G00404470 Rroxscaffold_7G00197950 Rroxscaffold_7G00197990 Rroxscaffold_7G00198020
rosa_rugosa Rorug01G0002500 Rorug02G0047200 Rorug02G0047300 Rorug02G0047300 Rorug02G0047400 Rorug02G0168000 Rorug02G0168000 Rorug02G0168100 Rorug02G0168100 Rorug02G0168400.1 Rorug03G0157600 Rorug03G0157700 Rorug05G0112600 Rorug06G0054600 Rorug06G0054700
rosa_samantha Rh1AG013300 Rh1AG195600 Rh1AG195700 Rh1AG196000 Rh1BG004900 Rh1BG114300 Rh2AG132300 Rh2BG095500 Rh2BG229700 Rh2BG229800 Rh2CG097400 Rh2CG221500 Rh2CG221800 Rh2CG222100 Rh2CG222200 Rh2CG222500 Rh2CG222600 Rh2CG345000 Rh5BG269700 Rh6AG172900 Rh6AG173100 Rh6CG080500 Rh6DG075900 Rh6DG164700 Rh6DG164900 Rh6DG165200 Rh6DG165300
rosa_wichuraiana Rw0G015390 Rw1G000600 Rw1G016130 Rw1G016190 Rw2G007140 Rw2G016970 Rw2G016990 Rw2G017000 Rw3G018910 Rw3G018920 Rw3G018930 Rw5G024830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 130
Acc36I ACCTGC 1 cut(s) 130
AccB1I GGYRCC 1 cut(s) 11
AciI CCGC 1 cut(s) 137
AclWI GGATC 2 cut(s) 227, 395
AcoI YGGCCR 1 cut(s) 134
AcsI RAATTY 1 cut(s) 168
AcuI CTGAAG 1 cut(s) 93
AcyI GRCGYC 1 cut(s) 12
AfiI CCNNNNNNNGG 1 cut(s) 222
AgsI TTSAA 3 cut(s) 124, 319, 431
AluBI AGCT 1 cut(s) 196
AluI AGCT 1 cut(s) 196
Alw26I GTCTC 1 cut(s) 214
AlwI GGATC 2 cut(s) 227, 395
AoxI GGCC 1 cut(s) 134
ApoI RAATTY 1 cut(s) 168
AspLEI GCGC 1 cut(s) 14
AspS9I GGNCC 3 cut(s) 225, 417, 442
AsuHPI GGTGA 2 cut(s) 79, 203
AvaII GGWCC 3 cut(s) 225, 417, 442
BaeGI GKGCMC 1 cut(s) 41
BanI GGYRCC 1 cut(s) 11
BccI CCATC 1 cut(s) 359
BceAI ACGGC 1 cut(s) 19
BcoDI GTCTC 1 cut(s) 214
BfaI CTAG 1 cut(s) 255
BfoI RGCGCY 1 cut(s) 15
BfuAI ACCTGC 1 cut(s) 130
BisI GCNGC 1 cut(s) 137
BlsI GCNGC 1 cut(s) 138
Bme18I GGWCC 3 cut(s) 225, 417, 442
BmgT120I GGNCC 3 cut(s) 225, 417, 442
BmiI GGNNCC 1 cut(s) 13
BmrI ACTGGG 1 cut(s) 360
BmsI GCATC 3 cut(s) 21, 118, 340
BmuI ACTGGG 1 cut(s) 360
BplI GAGNNNNNCTC 2 cut(s) 83, 115
BsaBI GATNNNNATC 1 cut(s) 330
BsaHI GRCGYC 1 cut(s) 12
BsaJI CCNNGG 1 cut(s) 221
Bsc4I CCNNNNNNNGG 1 cut(s) 222
Bse118I RCCGGY 1 cut(s) 14
Bse1I ACTGG 1 cut(s) 355
Bse8I GATNNNNATC 1 cut(s) 330
BseDI CCNNGG 1 cut(s) 221
BseJI GATNNNNATC 1 cut(s) 330
BseLI CCNNNNNNNGG 1 cut(s) 222
BseNI ACTGG 1 cut(s) 355
BseSI GKGCMC 1 cut(s) 41
BshFI GGCC 1 cut(s) 136
BshNI GGYRCC 1 cut(s) 11
BsiSI CCGG 1 cut(s) 15
BslI CCNNNNNNNGG 1 cut(s) 222
BsmAI GTCTC 1 cut(s) 214
BsnI GGCC 1 cut(s) 136
Bsp1286I GDGCHC 1 cut(s) 41
Bsp143I GATC 3 cut(s) 6, 232, 387
BspACI CCGC 1 cut(s) 137
BspANI GGCC 1 cut(s) 136
BspHI TCATGA 1 cut(s) 334
BspLI GGNNCC 1 cut(s) 13
BspMI ACCTGC 1 cut(s) 130
BspPI GGATC 2 cut(s) 227, 395
BspT107I GGYRCC 1 cut(s) 11
BsrFI RCCGGY 1 cut(s) 14
BsrI ACTGG 1 cut(s) 355
BssAI RCCGGY 1 cut(s) 14
BssECI CCNNGG 1 cut(s) 221
BssMI GATC 3 cut(s) 6, 232, 387
BssNI GRCGYC 1 cut(s) 12
BssT1I CCWWGG 1 cut(s) 221
Bst4CI ACNGT 3 cut(s) 208, 289, 495
BstACI GRCGYC 1 cut(s) 12
BstC8I GCNNGC 2 cut(s) 372, 451
BstH2I RGCGCY 1 cut(s) 15
BstHHI GCGC 1 cut(s) 14
BstKTI GATC 3 cut(s) 9, 235, 390
BstMAI GTCTC 1 cut(s) 214
BstMBI GATC 3 cut(s) 6, 232, 387
BstNSI RCATGY 1 cut(s) 453
BstSLI GKGCMC 1 cut(s) 41
BstX2I RGATCY 1 cut(s) 232
BstYI RGATCY 1 cut(s) 232
BsuRI GGCC 1 cut(s) 136
BtsIMutI CAGTG 1 cut(s) 491
BveI ACCTGC 1 cut(s) 130
Cac8I GCNNGC 2 cut(s) 372, 451
CciI TCATGA 1 cut(s) 334
CfoI GCGC 1 cut(s) 14
Cfr10I RCCGGY 1 cut(s) 14
Cfr13I GGNCC 3 cut(s) 225, 417, 442
CviAII CATG 6 cut(s) 55, 164, 202, 335, 383, 450
CviJI RGCY 5 cut(s) 136, 152, 196, 254, 370
CviKI_1 RGCY 5 cut(s) 136, 152, 196, 254, 370
DinI GGCGCC 1 cut(s) 13
DpnI GATC 3 cut(s) 8, 234, 389
DpnII GATC 3 cut(s) 6, 232, 387
EaeI YGGCCR 1 cut(s) 134
Eco130I CCWWGG 1 cut(s) 221
Eco47I GGWCC 3 cut(s) 225, 417, 442
Eco57I CTGAAG 1 cut(s) 93
EcoO109I RGGNCCY 1 cut(s) 442
EcoT14I CCWWGG 1 cut(s) 221
EcoT22I ATGCAT 1 cut(s) 333
EgeI GGCGCC 1 cut(s) 13
EheI GGCGCC 1 cut(s) 13
ErhI CCWWGG 1 cut(s) 221
FaeI CATG 6 cut(s) 58, 167, 205, 338, 386, 453
FalI AAGNNNNNCTT 2 cut(s) 354, 386
FatI CATG 6 cut(s) 54, 163, 201, 334, 382, 449
FauNDI CATATG 1 cut(s) 298
Fnu4HI GCNGC 1 cut(s) 137
Fsp4HI GCNGC 1 cut(s) 137
FspBI CTAG 1 cut(s) 255
GlaI GCGC 1 cut(s) 13
GluI GCNGC 1 cut(s) 137
HaeII RGCGCY 1 cut(s) 15
HaeIII GGCC 1 cut(s) 136
HapII CCGG 1 cut(s) 15
HhaI GCGC 1 cut(s) 14
Hin1I GRCGYC 1 cut(s) 12
Hin1II CATG 6 cut(s) 58, 167, 205, 338, 386, 453
Hin6I GCGC 1 cut(s) 12
HinP1I GCGC 1 cut(s) 12
HincII GTYRAC 1 cut(s) 478
HindII GTYRAC 1 cut(s) 478
HinfI GANTC 4 cut(s) 59, 92, 146, 423
HpaI GTTAAC 1 cut(s) 478
HpaII CCGG 1 cut(s) 15
HphI GGTGA 2 cut(s) 79, 203
Hpy166II GTNNAC 1 cut(s) 478
Hpy188I TCNGA 4 cut(s) 49, 64, 73, 294
Hpy188III TCNNGA 4 cut(s) 236, 335, 359, 391
Hpy8I GTNNAC 1 cut(s) 478
HpyAV CCTTC 2 cut(s) 94, 388
HpyCH4III ACNGT 3 cut(s) 208, 289, 495
HpyCH4IV ACGT 2 cut(s) 435, 480
HpyCH4V TGCA 2 cut(s) 331, 449
HpySE526I ACGT 2 cut(s) 435, 480
Hsp92I GRCGYC 1 cut(s) 12
Hsp92II CATG 6 cut(s) 58, 167, 205, 338, 386, 453
HspAI GCGC 1 cut(s) 12
KasI GGCGCC 1 cut(s) 11
KspAI GTTAAC 1 cut(s) 478
Kzo9I GATC 3 cut(s) 6, 232, 387
LmnI GCTCC 1 cut(s) 397
LpnPI CCDG 8 cut(s) 28, 125, 173, 235, 249, 336, 433, 467
LweI GCATC 3 cut(s) 21, 118, 340
MaeI CTAG 1 cut(s) 255
MaeII ACGT 2 cut(s) 435, 480
MaeIII GTNAC 2 cut(s) 17, 76
MalI GATC 3 cut(s) 8, 234, 389
MboI GATC 3 cut(s) 6, 232, 387
MboII GAAGA 2 cut(s) 40, 374
MflI RGATCY 1 cut(s) 232
MhlI GDGCHC 1 cut(s) 41
MluCI AATT 2 cut(s) 168, 306
Mly113I GGCGCC 1 cut(s) 12
MlyI GAGTC 2 cut(s) 68, 101
MmeI TCCRAC 3 cut(s) 42, 72, 317
MnlI CCTC 2 cut(s) 91, 408
Mph1103I ATGCAT 1 cut(s) 333
MseI TTAA 2 cut(s) 309, 477
MslI CAYNNNNRTG 1 cut(s) 471
MspI CCGG 1 cut(s) 15
NarI GGCGCC 1 cut(s) 12
NdeI CATATG 1 cut(s) 298
NdeII GATC 3 cut(s) 6, 232, 387
NlaIII CATG 6 cut(s) 58, 167, 205, 338, 386, 453
NlaIV GGNNCC 1 cut(s) 13
NmuCI GTSAC 2 cut(s) 17, 76
NsiI ATGCAT 1 cut(s) 333
NspI RCATGY 1 cut(s) 453
PaeI GCATGC 1 cut(s) 453
PagI TCATGA 1 cut(s) 334
PaqCI CACCTGC 1 cut(s) 130
PcsI WCGNNNNNNNCGW 1 cut(s) 32
PfeI GAWTC 2 cut(s) 146, 423
PkrI GCNGC 1 cut(s) 138
PleI GAGTC 2 cut(s) 67, 100
PluTI GGCGCC 1 cut(s) 15
PpsI GAGTC 2 cut(s) 67, 100
PpuMI RGGWCCY 1 cut(s) 442
Psp5II RGGWCCY 1 cut(s) 442
PspN4I GGNNCC 1 cut(s) 13
PspPI GGNCC 3 cut(s) 225, 417, 442
PspPPI RGGWCCY 1 cut(s) 442
PsuI RGATCY 1 cut(s) 232
RseI CAYNNNNRTG 1 cut(s) 471
SaqAI TTAA 2 cut(s) 309, 477
SatI GCNGC 1 cut(s) 137
Sau3AI GATC 3 cut(s) 6, 232, 387
Sau96I GGNCC 3 cut(s) 225, 417, 442
SchI GAGTC 2 cut(s) 68, 101
SduI GDGCHC 1 cut(s) 41
SetI ASST 6 cut(s) 83, 144, 198, 438, 447, 483
SfaNI GCATC 3 cut(s) 21, 118, 340
SfoI GGCGCC 1 cut(s) 13
SinI GGWCC 3 cut(s) 225, 417, 442
SmiMI CAYNNNNRTG 1 cut(s) 471
SphI GCATGC 1 cut(s) 453
Sse9I AATT 2 cut(s) 168, 306
SsiI CCGC 1 cut(s) 137
SspDI GGCGCC 1 cut(s) 11
SspMI CTAG 1 cut(s) 255
StyI CCWWGG 1 cut(s) 221
TaaI ACNGT 3 cut(s) 208, 289, 495
TaiI ACGT 2 cut(s) 438, 483
TaqI TCGA 1 cut(s) 26
TasI AATT 2 cut(s) 168, 306
TauI GCSGC 1 cut(s) 139
TfiI GAWTC 2 cut(s) 146, 423
Tru1I TTAA 2 cut(s) 309, 477
Tru9I TTAA 2 cut(s) 309, 477
TscAI CASTG 1 cut(s) 498
TseFI GTSAC 2 cut(s) 17, 76
Tsp45I GTSAC 2 cut(s) 17, 76
TspGWI ACGGA 1 cut(s) 427
TspRI CASTG 1 cut(s) 498
VpaK11BI GGWCC 3 cut(s) 225, 417, 442
XapI RAATTY 1 cut(s) 168
XceI RCATGY 1 cut(s) 453
XcmI CCANNNNNNNNNTGG 1 cut(s) 347
XspI CTAG 1 cut(s) 255
Zsp2I ATGCAT 1 cut(s) 333
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.