RLG00000013797

Alcohol dehydrogenase GroES-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0000167
Physical Location & Seq
Forward (+)
41219091 .. 41221633
2543 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000013797

Sequence Viewer

Length: 921 bp
ATGGTGGCATCTTCAGAGCACGAACACCCCAAGAAGGCCCTTGGATGGGCTGCCAGAGACACATCTGGTGTCCTCTCTCCTTTCAAGTTCTCAAGAAGGGAAACTGGAGAGAAAGACGTGGCGTTCAAAGTTTTGGTCTGCGGTATATGCCATTCCGACCTTCACATGGTTAAGAACGAATGGGGCGTCTCTACCTATCCTCTTGTTCCCGGACATGAGATTGTGGGTAAAGTGACAGAAGTGGGGAGCAAAGTCCAAAAGTTTAAAGTTGGAGACAAAGTTGGTGTTGGGTGCTTGGTAGGCTCATGCAAATCTTGCGACAGCTGTGCTAACGATTTGGAAAATTACTGCCCTAAATCAATACAGACTTACGGCGCCAAGTACCTTGACGGAACCACCACATACGGCGGTTACTCTGACATCATGGTAGCGAATGAGGACTTTGTAATCCGTATTCCAGACAACCTGCCTCTTGATGGTGCTGCTCCTCTCCTCTGTGCCGGAATTACAACATATAGTCCCATGAGATATTTCGGACTTGACAAACCCGGCATGCATGTGGGGGTGGTTGGCCTTGGCGGTTTAGGTCACGTGGCGGTGAAGTTTGCCAAGGCTTTGGGGGTTAAGGTTACAGTGATCAGTACCTCCCCTAATAAGAAAGATGAAGCTATTAAACATCTCGGTGCTGATTCTTTCTTGGTCAGTCGTGACCAAGATCAGATGCAGGCTGCCATGGGAACATTGGATGGTATCATCGACACAGTTTCTGCAGCCCACCCTCTCCCACCTCTGATTAGTTTATTGAAGGTTAATGGAAAGCTTGTGATGGTTGGAGCACCAGAGAAGCCTCTTGATCTCCCAGTTTTTTCCTTGCTAATGGGTCGGACTTTATCCTTGTTATTCTGCATTTTAATTGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
ADH_N ADH_zinc_N

Protein Analysis

307

Amino Acids

32.56

Weight (kDa)

7.58

Isoelectric Point (pI)

20.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ADH_N PF08240 37 - 154 7.1e-27 Alcohol dehydrogenase GroES-like domain
ADH_zinc_N PF00107 194 - 295 2.2e-18 Zinc-binding dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000167)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G37980 AT4G37980 AT4G37990
fragaria_vesca FvH4_1g19210 FvH4_1g19220 FvH4_1g19240 FvH4_1g19240 FvH4_1g19261 FvH4_1g19262 FvH4_1g19263 FvH4_1g19263 FvH4_1g19265 FvH4_1g19281 FvH4_1g19281 FvH4_7g07240 FvH4_7g07240 FvH4_7g07240
malus_domestica MD01G1042500.v1.1 MD01G1042600.v1.1 MD01G1042800.v1.1 MD01G1042900.v1.1 MD05G1034100.v1.1 MD10G1035900.v1.1 MD10G1036000.v1.1 MD10G1155000.v1.1 MD10G1155100.v1.1 MD10G1155200.v1.1 MD10G1155400.v1.1 MD10G1155700.v1.1 MD10G1155800.v1.1 MD15G1308800.v1.1 MD15G1308900.v1.1
prunus_persica Prupe.6G205600_v2.0.a1 Prupe.6G205700_v2.0.a1 Prupe.6G205800_v2.0.a1 Prupe.6G205900_v2.0.a1 Prupe.6G206300_v2.0.a1 Prupe.6G206800_v2.0.a1 Prupe.6G207100_v2.0.a1 Prupe.6G207200_v2.0.a1 Prupe.6G207300_v2.0.a1 Prupe.6G207400_v2.0.a1 Prupe.6G207500_v2.0.a1 Prupe.6G207600_v2.0.a1 Prupe.6G207700_v2.0.a1 Prupe.6G207900_v2.0.a1
pyrus_communis pycom01g06970 pycom01g06980 pycom01g06990 pycom05g02460 pycom08g00750 pycom10g13410 pycom15g27310 pycom15g27320
rosa_chinensis RchiOBHm_Chr1g0314861 RchiOBHm_Chr1g0345441 RchiOBHm_Chr1g0345451 RchiOBHm_Chr1g0345621 RchiOBHm_Chr1g0345751 RchiOBHm_Chr1g0345861 RchiOBHm_Chr1g0345871 RchiOBHm_Chr1g0345891 RchiOBHm_Chr2g0094851 RchiOBHm_Chr2g0110471 RchiOBHm_Chr2g0110511 RchiOBHm_Chr2g0110531 RchiOBHm_Chr2g0110541 RchiOBHm_Chr2g0110571 RchiOBHm_Chr5g0039381 RchiOBHm_Chr5g0039391 RchiOBHm_Chr6g0270311 RchiOBHm_Chr6g0270331 RchiOBHm_Chr6g0270411 RchiOBHm_Chr6g0270431
rosa_laevigata RLG00000000515 RLG00000013793 RLG00000013797 RLG00000013799 RLG00000016525 RLG00000017808 RLG00000017811 RLG00000017813 RLG00000017816 RLG00000017819 RLG00000017822 RLG00000017824 RLG00000017825 RLG00000028835
rosa_multiflora Rmu_co8225458.1_g000001 Rmu_sc0000389.1_g000006 Rmu_sc0000389.1_g000014 Rmu_sc0000389.1_g000023 Rmu_sc0001292.1_g000012 Rmu_sc0001292.1_g000026 Rmu_sc0002145.1_g000003 Rmu_sc0002329.1_g000033 Rmu_sc0002833.1_g000044 Rmu_sc0004316.1_g000012 Rmu_sc0004439.1_g000003 Rmu_sc0006422.1_g000028 Rmu_sc0009479.1_g000012 Rmu_sc0010489.1_g000009 Rmu_sc0010489.1_g000010 Rmu_sc0017837.1_g000003 Rmu_sc0032320.1_g000001
rosa_roxburghii Rroxscaffold_1G00050770 Rroxscaffold_2G00133110 Rroxscaffold_2G00133140 Rroxscaffold_2G00133200 Rroxscaffold_2G00133270 Rroxscaffold_2G00133290 Rroxscaffold_2G00133300 Rroxscaffold_2G00133350 Rroxscaffold_4G00292490 Rroxscaffold_4G00309020 Rroxscaffold_4G00331740 Rroxscaffold_4G00331800 Rroxscaffold_6G00404470 Rroxscaffold_7G00197950 Rroxscaffold_7G00197990 Rroxscaffold_7G00198020
rosa_rugosa Rorug01G0002500 Rorug02G0047200 Rorug02G0047300 Rorug02G0047300 Rorug02G0047400 Rorug02G0168000 Rorug02G0168000 Rorug02G0168100 Rorug02G0168100 Rorug02G0168400.1 Rorug03G0157600 Rorug03G0157700 Rorug05G0112600 Rorug06G0054600 Rorug06G0054700
rosa_samantha Rh1AG013300 Rh1AG195600 Rh1AG195700 Rh1AG196000 Rh1BG004900 Rh1BG114300 Rh2AG132300 Rh2BG095500 Rh2BG229700 Rh2BG229800 Rh2CG097400 Rh2CG221500 Rh2CG221800 Rh2CG222100 Rh2CG222200 Rh2CG222500 Rh2CG222600 Rh2CG345000 Rh5BG269700 Rh6AG172900 Rh6AG173100 Rh6CG080500 Rh6DG075900 Rh6DG164700 Rh6DG164900 Rh6DG165200 Rh6DG165300
rosa_wichuraiana Rw0G015390 Rw1G000600 Rw1G016130 Rw1G016190 Rw2G007140 Rw2G016970 Rw2G016990 Rw2G017000 Rw3G018910 Rw3G018920 Rw3G018930 Rw5G024830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 474
AccB1I GGYRCC 1 cut(s) 374
AciI CCGC 4 cut(s) 141, 408, 579, 596
AcvI CACGTG 1 cut(s) 592
AcyI GRCGYC 2 cut(s) 186, 375
AfaI GTAC 2 cut(s) 383, 643
AfiI CCNNNNNNNGG 5 cut(s) 34, 45, 46, 166, 476
AgsI TTSAA 3 cut(s) 85, 127, 805
AjiI CACGTC 1 cut(s) 118
AluBI AGCT 3 cut(s) 324, 668, 820
AluI AGCT 3 cut(s) 324, 668, 820
Alw21I GWGCWC 2 cut(s) 21, 838
Alw26I GTCTC 3 cut(s) 51, 193, 267
AlwNI CAGNNNCTG 1 cut(s) 767
AoxI GGCC 2 cut(s) 36, 571
ApeKI GCWGC 4 cut(s) 50, 482, 728, 770
ArsI GACNNNNNNTTYG 4 cut(s) 120, 152, 171, 203
AspLEI GCGC 1 cut(s) 377
AspS9I GGNCC 1 cut(s) 37
AsuC2I CCSGG 2 cut(s) 210, 549
AsuHPI GGTGA 1 cut(s) 610
BanI GGYRCC 1 cut(s) 374
BbrPI CACGTG 1 cut(s) 592
Bbv12I GWGCWC 2 cut(s) 21, 838
BbvI GCAGC 4 cut(s) 37, 469, 715, 782
BccI CCATC 4 cut(s) 39, 470, 740, 820
BceAI ACGGC 2 cut(s) 388, 421
BcgI CGANNNNNNTGC 2 cut(s) 308, 342
BclI TGATCA 1 cut(s) 636
BcnI CCSGG 2 cut(s) 210, 549
BcoDI GTCTC 3 cut(s) 51, 193, 267
BfmI CTRYAG 1 cut(s) 768
BfoI RGCGCY 1 cut(s) 378
BfuAI ACCTGC 1 cut(s) 474
BisI GCNGC 4 cut(s) 51, 483, 729, 771
BlsI GCNGC 4 cut(s) 52, 484, 730, 772
Bme1390I CCNGG 2 cut(s) 210, 549
BmgBI CACGTC 1 cut(s) 118
BmgT120I GGNCC 1 cut(s) 37
BmiI GGNNCC 2 cut(s) 376, 394
BmrFI CCNGG 2 cut(s) 210, 549
BmrI ACTGGG 1 cut(s) 854
BmsI GCATC 2 cut(s) 17, 711
BmuI ACTGGG 1 cut(s) 854
BpmI CTGGAG 1 cut(s) 126
BpuEI CTTGAG 1 cut(s) 76
BpuMI CCSGG 2 cut(s) 210, 549
BsaAI YACGTR 1 cut(s) 592
BsaHI GRCGYC 2 cut(s) 186, 375
BsaJI CCNNGG 4 cut(s) 40, 574, 609, 732
BsaXI ACNNNNNCTCC 2 cut(s) 264, 294
Bsc4I CCNNNNNNNGG 5 cut(s) 34, 45, 46, 166, 476
Bse1I ACTGG 2 cut(s) 109, 860
BseDI CCNNGG 4 cut(s) 40, 574, 609, 732
BseGI GGATG 2 cut(s) 50, 751
BseLI CCNNNNNNNGG 5 cut(s) 34, 45, 46, 166, 476
BseNI ACTGG 2 cut(s) 109, 860
BseRI GAGGAG 2 cut(s) 477, 482
BseXI GCAGC 4 cut(s) 37, 469, 715, 782
BshFI GGCC 2 cut(s) 38, 573
BshNI GGYRCC 1 cut(s) 374
BsiHKAI GWGCWC 2 cut(s) 21, 838
BsiSI CCGG 3 cut(s) 210, 501, 549
BslFI GGGAC 1 cut(s) 504
BslI CCNNNNNNNGG 5 cut(s) 34, 45, 46, 166, 476
BsmAI GTCTC 3 cut(s) 51, 193, 267
BsmBI CGTCTC 1 cut(s) 193
BsmFI GGGAC 1 cut(s) 504
BsnI GGCC 2 cut(s) 38, 573
Bsp1286I GDGCHC 2 cut(s) 21, 838
Bsp143I GATC 3 cut(s) 636, 715, 853
Bsp19I CCATGG 1 cut(s) 732
BspACI CCGC 4 cut(s) 141, 408, 579, 596
BspANI GGCC 2 cut(s) 38, 573
BspLI GGNNCC 2 cut(s) 376, 394
BspMAI CTGCAG 1 cut(s) 772
BspMI ACCTGC 1 cut(s) 474
BspT107I GGYRCC 1 cut(s) 374
BsrI ACTGG 2 cut(s) 109, 860
BssECI CCNNGG 4 cut(s) 40, 574, 609, 732
BssMI GATC 3 cut(s) 636, 715, 853
BssNI GRCGYC 2 cut(s) 186, 375
BssT1I CCWWGG 4 cut(s) 40, 574, 609, 732
Bst4CI ACNGT 2 cut(s) 634, 763
BstACI GRCGYC 2 cut(s) 186, 375
BstAPI GCANNNNNTGC 1 cut(s) 315
BstBAI YACGTR 1 cut(s) 592
BstC8I GCNNGC 2 cut(s) 554, 726
BstDSI CCRYGG 1 cut(s) 732
BstF5I GGATG 2 cut(s) 50, 751
BstH2I RGCGCY 1 cut(s) 378
BstHHI GCGC 1 cut(s) 377
BstKTI GATC 3 cut(s) 639, 718, 856
BstMAI GTCTC 3 cut(s) 51, 193, 267
BstMBI GATC 3 cut(s) 636, 715, 853
BstMWI GCNNNNNNNGC 3 cut(s) 147, 300, 315
BstNSI RCATGY 2 cut(s) 556, 560
BstSCI CCNGG 2 cut(s) 208, 547
BstSFI CTRYAG 1 cut(s) 768
BstV1I GCAGC 4 cut(s) 37, 469, 715, 782
BstXI CCANNNNNNTGG 1 cut(s) 616
BsuRI GGCC 2 cut(s) 38, 573
BtgI CCRYGG 1 cut(s) 732
BtrI CACGTC 1 cut(s) 118
BtsCI GGATG 2 cut(s) 50, 751
BtsIMutI CAGTG 1 cut(s) 639
BveI ACCTGC 1 cut(s) 474
Cac8I GCNNGC 2 cut(s) 554, 726
CaiI CAGNNNCTG 1 cut(s) 767
CfoI GCGC 1 cut(s) 377
Cfr13I GGNCC 1 cut(s) 37
CseI GACGC 1 cut(s) 175
Csp6I GTAC 2 cut(s) 382, 642
CviAII CATG 8 cut(s) 166, 215, 306, 424, 523, 553, 557, 733
CviQI GTAC 2 cut(s) 382, 642
DinI GGCGCC 1 cut(s) 376
DpnI GATC 3 cut(s) 638, 717, 855
DpnII GATC 3 cut(s) 636, 715, 853
DraI TTTAAA 1 cut(s) 265
Eco130I CCWWGG 4 cut(s) 40, 574, 609, 732
Eco72I CACGTG 1 cut(s) 592
EcoO109I RGGNCCY 1 cut(s) 37
EcoT14I CCWWGG 4 cut(s) 40, 574, 609, 732
EcoT22I ATGCAT 1 cut(s) 558
EgeI GGCGCC 1 cut(s) 376
EheI GGCGCC 1 cut(s) 376
ErhI CCWWGG 4 cut(s) 40, 574, 609, 732
Esp3I CGTCTC 1 cut(s) 193
FaeI CATG 8 cut(s) 169, 218, 309, 427, 526, 556, 560, 736
FaqI GGGAC 1 cut(s) 504
FatI CATG 8 cut(s) 165, 214, 305, 423, 522, 552, 556, 732
FbaI TGATCA 1 cut(s) 636
Fnu4HI GCNGC 4 cut(s) 51, 483, 729, 771
FokI GGATG 2 cut(s) 57, 758
Fsp4HI GCNGC 4 cut(s) 51, 483, 729, 771
GlaI GCGC 1 cut(s) 376
GluI GCNGC 4 cut(s) 51, 483, 729, 771
GsuI CTGGAG 1 cut(s) 126
HaeII RGCGCY 1 cut(s) 378
HaeIII GGCC 2 cut(s) 38, 573
HapII CCGG 3 cut(s) 210, 501, 549
HgaI GACGC 1 cut(s) 175
HhaI GCGC 1 cut(s) 377
Hin1I GRCGYC 2 cut(s) 186, 375
Hin1II CATG 8 cut(s) 169, 218, 309, 427, 526, 556, 560, 736
Hin6I GCGC 1 cut(s) 375
HinP1I GCGC 1 cut(s) 375
HindIII AAGCTT 1 cut(s) 818
HinfI GANTC 1 cut(s) 689
HpaII CCGG 3 cut(s) 210, 501, 549
HphI GGTGA 1 cut(s) 610
Hpy188I TCNGA 7 cut(s) 16, 157, 418, 536, 720, 792, 885
Hpy188III TCNNGA 5 cut(s) 93, 458, 473, 707, 851
HpyAV CCTTC 4 cut(s) 28, 90, 170, 799
HpyCH4III ACNGT 2 cut(s) 634, 763
HpyCH4IV ACGT 2 cut(s) 117, 591
HpyCH4V TGCA 5 cut(s) 309, 556, 724, 770, 906
HpyF10VI GCNNNNNNNGC 3 cut(s) 147, 300, 315
HpySE526I ACGT 2 cut(s) 117, 591
Hsp92I GRCGYC 2 cut(s) 186, 375
Hsp92II CATG 8 cut(s) 169, 218, 309, 427, 526, 556, 560, 736
HspAI GCGC 1 cut(s) 375
KasI GGCGCC 1 cut(s) 374
Ksp22I TGATCA 1 cut(s) 636
Kzo9I GATC 3 cut(s) 636, 715, 853
LmnI GCTCC 3 cut(s) 246, 490, 833
Lsp1109I GCAGC 4 cut(s) 37, 469, 715, 782
LweI GCATC 2 cut(s) 17, 711
MaeII ACGT 2 cut(s) 117, 591
MaeIII GTNAC 5 cut(s) 232, 410, 587, 628, 707
MalI GATC 3 cut(s) 638, 717, 855
MboI GATC 3 cut(s) 636, 715, 853
MboII GAAGA 1 cut(s) 3
MhlI GDGCHC 2 cut(s) 21, 838
MluCI AATT 3 cut(s) 343, 504, 912
Mly113I GGCGCC 1 cut(s) 375
MmeI TCCRAC 4 cut(s) 180, 250, 811, 863
Mph1103I ATGCAT 1 cut(s) 558
MseI TTAA 6 cut(s) 171, 264, 624, 672, 810, 911
MslI CAYNNNNRTG 2 cut(s) 557, 681
MspA1I CMGCKG 1 cut(s) 324
MspI CCGG 3 cut(s) 210, 501, 549
MspR9I CCNGG 2 cut(s) 210, 549
MwoI GCNNNNNNNGC 3 cut(s) 147, 300, 315
NarI GGCGCC 1 cut(s) 375
NciI CCSGG 2 cut(s) 210, 549
NcoI CCATGG 1 cut(s) 732
NdeII GATC 3 cut(s) 636, 715, 853
NlaIII CATG 8 cut(s) 169, 218, 309, 427, 526, 556, 560, 736
NlaIV GGNNCC 2 cut(s) 376, 394
NmuCI GTSAC 3 cut(s) 232, 587, 707
NsiI ATGCAT 1 cut(s) 558
NspI RCATGY 2 cut(s) 556, 560
PaeI GCATGC 1 cut(s) 556
PcsI WCGNNNNNNNCGW 1 cut(s) 183
PfeI GAWTC 1 cut(s) 689
PfoI TCCNGGA 1 cut(s) 208
PkrI GCNGC 4 cut(s) 52, 484, 730, 772
PluTI GGCGCC 1 cut(s) 378
PmaCI CACGTG 1 cut(s) 592
PmlI CACGTG 1 cut(s) 592
Ppu21I YACGTR 1 cut(s) 592
PspCI CACGTG 1 cut(s) 592
PspN4I GGNNCC 2 cut(s) 376, 394
PspPI GGNCC 1 cut(s) 37
PstI CTGCAG 1 cut(s) 772
PstNI CAGNNNCTG 1 cut(s) 767
PvuII CAGCTG 1 cut(s) 324
RsaI GTAC 2 cut(s) 383, 643
RsaNI GTAC 2 cut(s) 382, 642
RseI CAYNNNNRTG 2 cut(s) 557, 681
SaqAI TTAA 6 cut(s) 171, 264, 624, 672, 810, 911
SatI GCNGC 4 cut(s) 51, 483, 729, 771
Sau3AI GATC 3 cut(s) 636, 715, 853
Sau96I GGNCC 1 cut(s) 37
ScrFI CCNGG 2 cut(s) 210, 549
SduI GDGCHC 2 cut(s) 21, 838
SfaNI GCATC 2 cut(s) 17, 711
SfcI CTRYAG 1 cut(s) 768
SfoI GGCGCC 1 cut(s) 376
SmiMI CAYNNNNRTG 2 cut(s) 557, 681
SmlI CTYRAG 1 cut(s) 91
SmoI CTYRAG 1 cut(s) 91
SphI GCATGC 1 cut(s) 556
Sse9I AATT 3 cut(s) 343, 504, 912
SsiI CCGC 4 cut(s) 141, 408, 579, 596
SspDI GGCGCC 1 cut(s) 374
StyD4I CCNGG 2 cut(s) 208, 547
StyI CCWWGG 4 cut(s) 40, 574, 609, 732
TaaI ACNGT 2 cut(s) 634, 763
TaiI ACGT 2 cut(s) 120, 594
TaqI TCGA 1 cut(s) 756
TasI AATT 3 cut(s) 343, 504, 912
TfiI GAWTC 1 cut(s) 689
Tru1I TTAA 6 cut(s) 171, 264, 624, 672, 810, 911
Tru9I TTAA 6 cut(s) 171, 264, 624, 672, 810, 911
TscAI CASTG 1 cut(s) 639
TseFI GTSAC 3 cut(s) 232, 587, 707
TseI GCWGC 4 cut(s) 50, 482, 728, 770
Tsp45I GTSAC 3 cut(s) 232, 587, 707
TspDTI ATGAA 1 cut(s) 678
TspGWI ACGGA 2 cut(s) 405, 440
TspRI CASTG 1 cut(s) 639
XceI RCATGY 2 cut(s) 556, 560
XcmI CCANNNNNNNNNTGG 1 cut(s) 739
Zsp2I ATGCAT 1 cut(s) 558
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.