Rh6CG080500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0000167
Physical Location & Seq
Forward (+)
8749180 .. 8755950
6771 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG080500.1

Sequence Viewer

Length: 399 bp
ATGCTTCGAATGGTCTCTCTCAAGGTGGAACTTGCTCTTGCGAGGGATGTATTTCTAGATAGCATCAGTGGGGTTGATGTTGAAGACCAATTGGTCCTGGAAGATGTTGAGGACGATCACGATGAAGCCGGCGATGCAGTTGAAGGTGAAGTCGCAGGTCCAAAGGCGGTGGGAGGAGGTGAAGAGGAAAGGGAGAGTGAAGATCAGAGAGTGGGTGGGAGTGCCTATGGCTGGGGATGGGAATGGGAGAATGATGAGAAGTTCGACGGCAAAGATTTGTGTCGATTTCAATGCGCTATCACCGGTTTAGAGCTACTCAATCACAATAAAGGATGCCTTTTTTCGGCTTTTGTCAAACCCCTAACTATTATAAGGATTGATGACGGACAGCCCGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

132

Amino Acids

14.51

Weight (kDa)

4.18

Isoelectric Point (pI)

29.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000167)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G37980 AT4G37980 AT4G37990
fragaria_vesca FvH4_1g19210 FvH4_1g19220 FvH4_1g19240 FvH4_1g19240 FvH4_1g19261 FvH4_1g19262 FvH4_1g19263 FvH4_1g19263 FvH4_1g19265 FvH4_1g19281 FvH4_1g19281 FvH4_7g07240 FvH4_7g07240 FvH4_7g07240
malus_domestica MD01G1042500.v1.1 MD01G1042600.v1.1 MD01G1042800.v1.1 MD01G1042900.v1.1 MD05G1034100.v1.1 MD10G1035900.v1.1 MD10G1036000.v1.1 MD10G1155000.v1.1 MD10G1155100.v1.1 MD10G1155200.v1.1 MD10G1155400.v1.1 MD10G1155700.v1.1 MD10G1155800.v1.1 MD15G1308800.v1.1 MD15G1308900.v1.1
prunus_persica Prupe.6G205600_v2.0.a1 Prupe.6G205700_v2.0.a1 Prupe.6G205800_v2.0.a1 Prupe.6G205900_v2.0.a1 Prupe.6G206300_v2.0.a1 Prupe.6G206800_v2.0.a1 Prupe.6G207100_v2.0.a1 Prupe.6G207200_v2.0.a1 Prupe.6G207300_v2.0.a1 Prupe.6G207400_v2.0.a1 Prupe.6G207500_v2.0.a1 Prupe.6G207600_v2.0.a1 Prupe.6G207700_v2.0.a1 Prupe.6G207900_v2.0.a1
pyrus_communis pycom01g06970 pycom01g06980 pycom01g06990 pycom05g02460 pycom08g00750 pycom10g13410 pycom15g27310 pycom15g27320
rosa_chinensis RchiOBHm_Chr1g0314861 RchiOBHm_Chr1g0345441 RchiOBHm_Chr1g0345451 RchiOBHm_Chr1g0345621 RchiOBHm_Chr1g0345751 RchiOBHm_Chr1g0345861 RchiOBHm_Chr1g0345871 RchiOBHm_Chr1g0345891 RchiOBHm_Chr2g0094851 RchiOBHm_Chr2g0110471 RchiOBHm_Chr2g0110511 RchiOBHm_Chr2g0110531 RchiOBHm_Chr2g0110541 RchiOBHm_Chr2g0110571 RchiOBHm_Chr5g0039381 RchiOBHm_Chr5g0039391 RchiOBHm_Chr6g0270311 RchiOBHm_Chr6g0270331 RchiOBHm_Chr6g0270411 RchiOBHm_Chr6g0270431
rosa_laevigata RLG00000000515 RLG00000013793 RLG00000013797 RLG00000013799 RLG00000016525 RLG00000017808 RLG00000017811 RLG00000017813 RLG00000017816 RLG00000017819 RLG00000017822 RLG00000017824 RLG00000017825 RLG00000028835
rosa_multiflora Rmu_co8225458.1_g000001 Rmu_sc0000389.1_g000006 Rmu_sc0000389.1_g000014 Rmu_sc0000389.1_g000023 Rmu_sc0001292.1_g000012 Rmu_sc0001292.1_g000026 Rmu_sc0002145.1_g000003 Rmu_sc0002329.1_g000033 Rmu_sc0002833.1_g000044 Rmu_sc0004316.1_g000012 Rmu_sc0004439.1_g000003 Rmu_sc0006422.1_g000028 Rmu_sc0009479.1_g000012 Rmu_sc0010489.1_g000009 Rmu_sc0010489.1_g000010 Rmu_sc0017837.1_g000003 Rmu_sc0032320.1_g000001
rosa_roxburghii Rroxscaffold_1G00050770 Rroxscaffold_2G00133110 Rroxscaffold_2G00133140 Rroxscaffold_2G00133200 Rroxscaffold_2G00133270 Rroxscaffold_2G00133290 Rroxscaffold_2G00133300 Rroxscaffold_2G00133350 Rroxscaffold_4G00292490 Rroxscaffold_4G00309020 Rroxscaffold_4G00331740 Rroxscaffold_4G00331800 Rroxscaffold_6G00404470 Rroxscaffold_7G00197950 Rroxscaffold_7G00197990 Rroxscaffold_7G00198020
rosa_rugosa Rorug01G0002500 Rorug02G0047200 Rorug02G0047300 Rorug02G0047300 Rorug02G0047400 Rorug02G0168000 Rorug02G0168000 Rorug02G0168100 Rorug02G0168100 Rorug02G0168400.1 Rorug03G0157600 Rorug03G0157700 Rorug05G0112600 Rorug06G0054600 Rorug06G0054700
rosa_samantha Rh1AG013300 Rh1AG195600 Rh1AG195700 Rh1AG196000 Rh1BG004900 Rh1BG114300 Rh2AG132300 Rh2BG095500 Rh2BG229700 Rh2BG229800 Rh2CG097400 Rh2CG221500 Rh2CG221800 Rh2CG222100 Rh2CG222200 Rh2CG222500 Rh2CG222600 Rh2CG345000 Rh5BG269700 Rh6AG172900 Rh6AG173100 Rh6CG080500 Rh6DG075900 Rh6DG164700 Rh6DG164900 Rh6DG165200 Rh6DG165300
rosa_wichuraiana Rw0G015390 Rw1G000600 Rw1G016130 Rw1G016190 Rw2G007140 Rw2G016970 Rw2G016990 Rw2G017000 Rw3G018910 Rw3G018920 Rw3G018930 Rw5G024830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 371
AasI GACNNNNNNGTC 1 cut(s) 92
Acc36I ACCTGC 1 cut(s) 146
AciI CCGC 1 cut(s) 167
AfiI CCNNNNNNNGG 2 cut(s) 231, 343
AgeI ACCGGT 1 cut(s) 302
AgsI TTSAA 3 cut(s) 83, 143, 290
AjnI CCWGG 1 cut(s) 96
AluBI AGCT 1 cut(s) 313
AluI AGCT 1 cut(s) 313
Alw26I GTCTC 1 cut(s) 19
ArsI GACNNNNNNTTYG 1 cut(s) 378
AsiGI ACCGGT 1 cut(s) 302
AspLEI GCGC 1 cut(s) 296
AspS9I GGNCC 2 cut(s) 94, 158
AsuHPI GGTGA 3 cut(s) 158, 191, 292
AsuII TTCGAA 1 cut(s) 7
AvaII GGWCC 2 cut(s) 94, 158
BbsI GAAGAC 1 cut(s) 90
BccI CCATC 1 cut(s) 231
BceAI ACGGC 1 cut(s) 283
BcgI CGANNNNNNTGC 2 cut(s) 273, 307
BciT130I CCWGG 1 cut(s) 98
BcoDI GTCTC 1 cut(s) 19
BfaI CTAG 1 cut(s) 56
BfuAI ACCTGC 1 cut(s) 146
Bme1390I CCNGG 1 cut(s) 98
Bme18I GGWCC 2 cut(s) 94, 158
BmgT120I GGNCC 2 cut(s) 94, 158
BmrFI CCNGG 1 cut(s) 98
BmsI GCATC 3 cut(s) 72, 124, 323
BpiI GAAGAC 1 cut(s) 90
Bpu14I TTCGAA 1 cut(s) 7
BpuEI CTTGAG 1 cut(s) 5
BsaI GGTCTC 1 cut(s) 19
BsaWI WCCGGW 1 cut(s) 302
Bsc4I CCNNNNNNNGG 2 cut(s) 231, 343
Bse118I RCCGGY 2 cut(s) 128, 302
BseBI CCWGG 1 cut(s) 98
BseGI GGATG 3 cut(s) 52, 242, 338
BseLI CCNNNNNNNGG 2 cut(s) 231, 343
BseRI GAGGAG 1 cut(s) 189
BseYI CCCAGC 1 cut(s) 231
BshTI ACCGGT 1 cut(s) 302
BsiSI CCGG 2 cut(s) 129, 303
BslI CCNNNNNNNGG 2 cut(s) 231, 343
BsmAI GTCTC 1 cut(s) 19
Bso31I GGTCTC 1 cut(s) 19
Bsp119I TTCGAA 1 cut(s) 7
Bsp143I GATC 2 cut(s) 115, 202
BspACI CCGC 1 cut(s) 167
BspMI ACCTGC 1 cut(s) 146
BspT104I TTCGAA 1 cut(s) 7
BspTNI GGTCTC 1 cut(s) 19
BsrFI RCCGGY 2 cut(s) 128, 302
BssAI RCCGGY 2 cut(s) 128, 302
BssMI GATC 2 cut(s) 115, 202
Bst2UI CCWGG 1 cut(s) 98
Bst6I CTCTTC 1 cut(s) 177
BstBI TTCGAA 1 cut(s) 7
BstC8I GCNNGC 1 cut(s) 130
BstF5I GGATG 3 cut(s) 52, 242, 338
BstHHI GCGC 1 cut(s) 296
BstKTI GATC 2 cut(s) 118, 205
BstMAI GTCTC 1 cut(s) 19
BstMBI GATC 2 cut(s) 115, 202
BstMWI GCNNNNNNNGC 1 cut(s) 134
BstNI CCWGG 1 cut(s) 98
BstSCI CCNGG 1 cut(s) 96
BstV2I GAAGAC 1 cut(s) 90
BtgZI GCGATG 1 cut(s) 147
BtsCI GGATG 3 cut(s) 52, 242, 338
BtsIMutI CAGTG 1 cut(s) 73
BveI ACCTGC 1 cut(s) 146
Cac8I GCNNGC 1 cut(s) 130
CfoI GCGC 1 cut(s) 296
Cfr10I RCCGGY 2 cut(s) 128, 302
Cfr13I GGNCC 2 cut(s) 94, 158
CspAI ACCGGT 1 cut(s) 302
CspCI CAANNNNNGTGG 2 cut(s) 150, 185
CviJI RGCY 5 cut(s) 128, 231, 313, 347, 391
CviKI_1 RGCY 5 cut(s) 128, 231, 313, 347, 391
DpnI GATC 2 cut(s) 117, 204
DpnII GATC 2 cut(s) 115, 202
DrdI GACNNNNNNGTC 1 cut(s) 92
DseDI GACNNNNNNGTC 1 cut(s) 92
Eam1104I CTCTTC 1 cut(s) 177
EarI CTCTTC 1 cut(s) 177
Eco31I GGTCTC 1 cut(s) 19
Eco47I GGWCC 2 cut(s) 94, 158
EcoRII CCWGG 1 cut(s) 96
FaiI YATR 2 cut(s) 228, 371
FalI AAGNNNNNCTT 2 cut(s) 321, 353
FokI GGATG 3 cut(s) 59, 249, 345
FspBI CTAG 1 cut(s) 56
GlaI GCGC 1 cut(s) 295
GsaI CCCAGC 1 cut(s) 235
HapII CCGG 2 cut(s) 129, 303
HhaI GCGC 1 cut(s) 296
Hin6I GCGC 1 cut(s) 294
HinP1I GCGC 1 cut(s) 294
HpaII CCGG 2 cut(s) 129, 303
HphI GGTGA 3 cut(s) 158, 191, 292
Hpy188I TCNGA 1 cut(s) 207
Hpy188III TCNNGA 2 cut(s) 56, 119
Hpy99I CGWCG 1 cut(s) 269
HpyAV CCTTC 1 cut(s) 137
HpyCH4V TGCA 1 cut(s) 137
HpyF10VI GCNNNNNNNGC 1 cut(s) 134
HspAI GCGC 1 cut(s) 294
KroI GCCGGC 1 cut(s) 128
KroNI GCCGGC 1 cut(s) 130
Kzo9I GATC 2 cut(s) 115, 202
LpnPI CCDG 6 cut(s) 83, 110, 141, 142, 217, 316
LweI GCATC 3 cut(s) 72, 124, 323
MaeI CTAG 1 cut(s) 56
MalI GATC 2 cut(s) 117, 204
MboI GATC 2 cut(s) 115, 202
MboII GAAGA 4 cut(s) 95, 113, 194, 212
MfeI CAATTG 1 cut(s) 89
MluCI AATT 1 cut(s) 89
MnlI CCTC 5 cut(s) 36, 103, 167, 170, 178
MroNI GCCGGC 1 cut(s) 128
MspI CCGG 2 cut(s) 129, 303
MspR9I CCNGG 1 cut(s) 98
MunI CAATTG 1 cut(s) 89
MvaI CCWGG 1 cut(s) 98
MwoI GCNNNNNNNGC 1 cut(s) 134
NaeI GCCGGC 1 cut(s) 130
NdeII GATC 2 cut(s) 115, 202
NgoMIV GCCGGC 1 cut(s) 128
NspV TTCGAA 1 cut(s) 7
PcsI WCGNNNNNNNCGW 1 cut(s) 390
PdiI GCCGGC 1 cut(s) 130
PfoI TCCNGGA 1 cut(s) 96
PinAI ACCGGT 1 cut(s) 302
PsiI TTATAA 1 cut(s) 371
Psp6I CCWGG 1 cut(s) 96
PspFI CCCAGC 1 cut(s) 231
PspGI CCWGG 1 cut(s) 96
PspPI GGNCC 2 cut(s) 94, 158
Sau3AI GATC 2 cut(s) 115, 202
Sau96I GGNCC 2 cut(s) 94, 158
ScrFI CCNGG 1 cut(s) 98
SetI ASST 5 cut(s) 27, 148, 160, 181, 315
SfaNI GCATC 3 cut(s) 72, 124, 323
SfuI TTCGAA 1 cut(s) 7
SinI GGWCC 2 cut(s) 94, 158
SmlI CTYRAG 1 cut(s) 20
SmoI CTYRAG 1 cut(s) 20
Sse9I AATT 1 cut(s) 89
SsiI CCGC 1 cut(s) 167
SspMI CTAG 1 cut(s) 56
StyD4I CCNGG 1 cut(s) 96
TaqI TCGA 3 cut(s) 7, 264, 283
TasI AATT 1 cut(s) 89
TscAI CASTG 1 cut(s) 73
TspDTI ATGAA 1 cut(s) 138
TspGWI ACGGA 1 cut(s) 399
TspRI CASTG 1 cut(s) 73
VpaK11BI GGWCC 2 cut(s) 94, 158
XbaI TCTAGA 1 cut(s) 55
XspI CTAG 1 cut(s) 56
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.