MD10G1155100.v1.1

Dehydrogenase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
OG0000167
Physical Location & Seq
Reverse (-)
24287593 .. 24289512
1920 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1155100.v1.1.491

Sequence Viewer

Length: 594 bp
ATGGAGCGGCTCCTCTCCTATATATGCGATGGGATTACAACTTACAACCCTTTGAGATATTTCGGACTTGACAAACCAGGTATGTATGTGGGTGTGGTGGGTTCAGGTGGTCTAGGCCATGGGGTTAAGGTTAGTGTCATCAGTACCTCCCCTAATAAGAAGGATAAAGCAATTGAACATCTCTGCGCTAATTTGTTTTTGGTCAGCCGCAATGAAGATCAGATGCATGCTGCCGTGGGGACATTGGATGGTATCATTGACACGATTTCTGCACTCCACCCTCTATTGCCTTTGATTGGTTTGTTGAAGTCTCACGGAAAGCTAGTGATGCCACTGGTTGGAGCACCAGAGAAGCCTCTTGAGCTTCTTGTTTATCTTTTGCTCGTGGGAAGGAAAATTGTAGCTGACAGTACCATTGGGGGCATGAAGGAGACGCAAGAGATGATTGATTTCGCAGCCAAGCACAACATAACAGCTGATATTGAGGTTATCCCAATGGATTATGTGAACACTGCCATGGAGCGTCTTCTTAAAGCAGATGTCAGTTATCGATTTGTCATCGATATTGGAAACACATTGAAGTCTACCTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
ADH_N ADH_zinc_N

Protein Analysis

198

Amino Acids

21.4

Weight (kDa)

6.29

Isoelectric Point (pI)

21.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ADH_zinc_N PF00107 40 - 153 6.9e-06 Zinc-binding dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000167)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G37980 AT4G37980 AT4G37990
fragaria_vesca FvH4_1g19210 FvH4_1g19220 FvH4_1g19240 FvH4_1g19240 FvH4_1g19261 FvH4_1g19262 FvH4_1g19263 FvH4_1g19263 FvH4_1g19265 FvH4_1g19281 FvH4_1g19281 FvH4_7g07240 FvH4_7g07240 FvH4_7g07240
malus_domestica MD01G1042500.v1.1 MD01G1042600.v1.1 MD01G1042800.v1.1 MD01G1042900.v1.1 MD05G1034100.v1.1 MD10G1035900.v1.1 MD10G1036000.v1.1 MD10G1155000.v1.1 MD10G1155100.v1.1 MD10G1155200.v1.1 MD10G1155400.v1.1 MD10G1155700.v1.1 MD10G1155800.v1.1 MD15G1308800.v1.1 MD15G1308900.v1.1
prunus_persica Prupe.6G205600_v2.0.a1 Prupe.6G205700_v2.0.a1 Prupe.6G205800_v2.0.a1 Prupe.6G205900_v2.0.a1 Prupe.6G206300_v2.0.a1 Prupe.6G206800_v2.0.a1 Prupe.6G207100_v2.0.a1 Prupe.6G207200_v2.0.a1 Prupe.6G207300_v2.0.a1 Prupe.6G207400_v2.0.a1 Prupe.6G207500_v2.0.a1 Prupe.6G207600_v2.0.a1 Prupe.6G207700_v2.0.a1 Prupe.6G207900_v2.0.a1
pyrus_communis pycom01g06970 pycom01g06980 pycom01g06990 pycom05g02460 pycom08g00750 pycom10g13410 pycom15g27310 pycom15g27320
rosa_chinensis RchiOBHm_Chr1g0314861 RchiOBHm_Chr1g0345441 RchiOBHm_Chr1g0345451 RchiOBHm_Chr1g0345621 RchiOBHm_Chr1g0345751 RchiOBHm_Chr1g0345861 RchiOBHm_Chr1g0345871 RchiOBHm_Chr1g0345891 RchiOBHm_Chr2g0094851 RchiOBHm_Chr2g0110471 RchiOBHm_Chr2g0110511 RchiOBHm_Chr2g0110531 RchiOBHm_Chr2g0110541 RchiOBHm_Chr2g0110571 RchiOBHm_Chr5g0039381 RchiOBHm_Chr5g0039391 RchiOBHm_Chr6g0270311 RchiOBHm_Chr6g0270331 RchiOBHm_Chr6g0270411 RchiOBHm_Chr6g0270431
rosa_laevigata RLG00000000515 RLG00000013793 RLG00000013797 RLG00000013799 RLG00000016525 RLG00000017808 RLG00000017811 RLG00000017813 RLG00000017816 RLG00000017819 RLG00000017822 RLG00000017824 RLG00000017825 RLG00000028835
rosa_multiflora Rmu_co8225458.1_g000001 Rmu_sc0000389.1_g000006 Rmu_sc0000389.1_g000014 Rmu_sc0000389.1_g000023 Rmu_sc0001292.1_g000012 Rmu_sc0001292.1_g000026 Rmu_sc0002145.1_g000003 Rmu_sc0002329.1_g000033 Rmu_sc0002833.1_g000044 Rmu_sc0004316.1_g000012 Rmu_sc0004439.1_g000003 Rmu_sc0006422.1_g000028 Rmu_sc0009479.1_g000012 Rmu_sc0010489.1_g000009 Rmu_sc0010489.1_g000010 Rmu_sc0017837.1_g000003 Rmu_sc0032320.1_g000001
rosa_roxburghii Rroxscaffold_1G00050770 Rroxscaffold_2G00133110 Rroxscaffold_2G00133140 Rroxscaffold_2G00133200 Rroxscaffold_2G00133270 Rroxscaffold_2G00133290 Rroxscaffold_2G00133300 Rroxscaffold_2G00133350 Rroxscaffold_4G00292490 Rroxscaffold_4G00309020 Rroxscaffold_4G00331740 Rroxscaffold_4G00331800 Rroxscaffold_6G00404470 Rroxscaffold_7G00197950 Rroxscaffold_7G00197990 Rroxscaffold_7G00198020
rosa_rugosa Rorug01G0002500 Rorug02G0047200 Rorug02G0047300 Rorug02G0047300 Rorug02G0047400 Rorug02G0168000 Rorug02G0168000 Rorug02G0168100 Rorug02G0168100 Rorug02G0168400.1 Rorug03G0157600 Rorug03G0157700 Rorug05G0112600 Rorug06G0054600 Rorug06G0054700
rosa_samantha Rh1AG013300 Rh1AG195600 Rh1AG195700 Rh1AG196000 Rh1BG004900 Rh1BG114300 Rh2AG132300 Rh2BG095500 Rh2BG229700 Rh2BG229800 Rh2CG097400 Rh2CG221500 Rh2CG221800 Rh2CG222100 Rh2CG222200 Rh2CG222500 Rh2CG222600 Rh2CG345000 Rh5BG269700 Rh6AG172900 Rh6AG173100 Rh6CG080500 Rh6DG075900 Rh6DG164700 Rh6DG164900 Rh6DG165200 Rh6DG165300
rosa_wichuraiana Rw0G015390 Rw1G000600 Rw1G016130 Rw1G016190 Rw2G007140 Rw2G016970 Rw2G016990 Rw2G017000 Rw3G018910 Rw3G018920 Rw3G018930 Rw5G024830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 338
AccBSI CCGCTC 1 cut(s) 7
AccI GTMKAC 1 cut(s) 584
AciI CCGC 2 cut(s) 7, 208
AfaI GTAC 2 cut(s) 145, 412
AfiI CCNNNNNNNGG 2 cut(s) 296, 338
AgsI TTSAA 3 cut(s) 176, 307, 580
AjnI CCWGG 1 cut(s) 76
AluBI AGCT 4 cut(s) 322, 364, 404, 476
AluI AGCT 4 cut(s) 322, 364, 404, 476
Alw21I GWGCWC 1 cut(s) 346
Alw26I GTCTC 2 cut(s) 315, 425
AoxI GGCC 1 cut(s) 115
ApeKI GCWGC 2 cut(s) 230, 455
AspLEI GCGC 1 cut(s) 188
BauI CACGAG 1 cut(s) 383
BbsI GAAGAC 1 cut(s) 518
Bbv12I GWGCWC 1 cut(s) 346
BbvI GCAGC 2 cut(s) 217, 467
BccI CCATC 2 cut(s) 23, 242
BceAI ACGGC 1 cut(s) 218
BciT130I CCWGG 1 cut(s) 78
BcoDI GTCTC 2 cut(s) 315, 425
BfaI CTAG 2 cut(s) 113, 323
BisI GCNGC 4 cut(s) 8, 208, 231, 456
BlsI GCNGC 4 cut(s) 9, 209, 232, 457
Bme1390I CCNGG 1 cut(s) 78
BmiI GGNNCC 1 cut(s) 11
BmrFI CCNGG 1 cut(s) 78
BmsI GCATC 2 cut(s) 213, 318
BpiI GAAGAC 1 cut(s) 518
BpuEI CTTGAG 1 cut(s) 380
Bsa29I ATCGAT 2 cut(s) 550, 561
BsaJI CCNNGG 3 cut(s) 118, 234, 516
Bsc4I CCNNNNNNNGG 2 cut(s) 296, 338
Bse1I ACTGG 1 cut(s) 339
Bse3DI GCAATG 1 cut(s) 217
BseBI CCWGG 1 cut(s) 78
BseCI ATCGAT 2 cut(s) 550, 561
BseDI CCNNGG 3 cut(s) 118, 234, 516
BseGI GGATG 1 cut(s) 253
BseLI CCNNNNNNNGG 2 cut(s) 296, 338
BseMI GCAATG 1 cut(s) 217
BseNI ACTGG 1 cut(s) 339
BseXI GCAGC 2 cut(s) 217, 467
BsgI GTGCAG 1 cut(s) 255
BshFI GGCC 1 cut(s) 117
BshVI ATCGAT 2 cut(s) 550, 561
BsiHKAI GWGCWC 1 cut(s) 346
BslFI GGGAC 1 cut(s) 253
BslI CCNNNNNNNGG 2 cut(s) 296, 338
BsmAI GTCTC 2 cut(s) 315, 425
BsmBI CGTCTC 1 cut(s) 425
BsmFI GGGAC 1 cut(s) 253
BsnI GGCC 1 cut(s) 117
Bsp1286I GDGCHC 1 cut(s) 346
Bsp143I GATC 1 cut(s) 217
Bsp19I CCATGG 2 cut(s) 118, 516
BspACI CCGC 2 cut(s) 7, 208
BspANI GGCC 1 cut(s) 117
BspDI ATCGAT 2 cut(s) 550, 561
BspLI GGNNCC 1 cut(s) 11
BsrBI CCGCTC 1 cut(s) 7
BsrDI GCAATG 1 cut(s) 217
BsrI ACTGG 1 cut(s) 339
BssECI CCNNGG 3 cut(s) 118, 234, 516
BssMI GATC 1 cut(s) 217
BssSI CACGAG 1 cut(s) 383
BssT1I CCWWGG 2 cut(s) 118, 516
Bst2BI CACGAG 1 cut(s) 383
Bst2UI CCWGG 1 cut(s) 78
Bst4CI ACNGT 1 cut(s) 410
BstC8I GCNNGC 1 cut(s) 228
BstDSI CCRYGG 3 cut(s) 118, 234, 516
BstF5I GGATG 1 cut(s) 253
BstHHI GCGC 1 cut(s) 188
BstKTI GATC 1 cut(s) 220
BstMAI GTCTC 2 cut(s) 315, 425
BstMBI GATC 1 cut(s) 217
BstMWI GCNNNNNNNGC 2 cut(s) 328, 361
BstNI CCWGG 1 cut(s) 78
BstNSI RCATGY 1 cut(s) 230
BstSCI CCNGG 1 cut(s) 76
BstV1I GCAGC 2 cut(s) 217, 467
BstV2I GAAGAC 1 cut(s) 518
Bsu15I ATCGAT 2 cut(s) 550, 561
BsuRI GGCC 1 cut(s) 117
BsuTUI ATCGAT 2 cut(s) 550, 561
BtgI CCRYGG 3 cut(s) 118, 234, 516
BtgZI GCGATG 1 cut(s) 42
BtsCI GGATG 1 cut(s) 253
BtsI GCAGTG 1 cut(s) 510
BtsIMutI CAGTG 2 cut(s) 332, 510
Cac8I GCNNGC 1 cut(s) 228
CfoI GCGC 1 cut(s) 188
ClaI ATCGAT 2 cut(s) 550, 561
CseI GACGC 2 cut(s) 442, 512
CsiI ACCWGGT 1 cut(s) 76
Csp6I GTAC 2 cut(s) 144, 411
CviAII CATG 4 cut(s) 119, 227, 424, 517
CviJI RGCY 9 cut(s) 10, 117, 207, 322, 355, 364, 404, 458, 476
CviKI_1 RGCY 9 cut(s) 10, 117, 207, 322, 355, 364, 404, 458, 476
CviQI GTAC 2 cut(s) 144, 411
DpnI GATC 1 cut(s) 219
DpnII GATC 1 cut(s) 217
Eco130I CCWWGG 2 cut(s) 118, 516
EcoRII CCWGG 1 cut(s) 76
EcoT14I CCWWGG 2 cut(s) 118, 516
EcoT22I ATGCAT 1 cut(s) 228
ErhI CCWWGG 2 cut(s) 118, 516
Esp3I CGTCTC 1 cut(s) 425
FaeI CATG 4 cut(s) 122, 230, 427, 520
FalI AAGNNNNNCTT 1 cut(s) 572
FaqI GGGAC 1 cut(s) 253
FatI CATG 4 cut(s) 118, 226, 423, 516
FblI GTMKAC 1 cut(s) 584
Fnu4HI GCNGC 4 cut(s) 8, 208, 231, 456
FokI GGATG 1 cut(s) 260
Fsp4HI GCNGC 4 cut(s) 8, 208, 231, 456
FspBI CTAG 2 cut(s) 113, 323
GlaI GCGC 1 cut(s) 187
GluI GCNGC 4 cut(s) 8, 208, 231, 456
HaeIII GGCC 1 cut(s) 117
HgaI GACGC 2 cut(s) 442, 512
HhaI GCGC 1 cut(s) 188
Hin1II CATG 4 cut(s) 122, 230, 427, 520
Hin6I GCGC 1 cut(s) 186
HinP1I GCGC 1 cut(s) 186
Hpy166II GTNNAC 2 cut(s) 508, 585
Hpy188I TCNGA 2 cut(s) 65, 222
Hpy188III TCNNGA 1 cut(s) 359
Hpy8I GTNNAC 2 cut(s) 508, 585
HpyAV CCTTC 3 cut(s) 154, 384, 421
HpyCH4III ACNGT 1 cut(s) 410
HpyCH4V TGCA 2 cut(s) 226, 272
HpyF10VI GCNNNNNNNGC 2 cut(s) 328, 361
Hsp92II CATG 4 cut(s) 122, 230, 427, 520
HspAI GCGC 1 cut(s) 186
Kzo9I GATC 1 cut(s) 217
LmnI GCTCC 4 cut(s) 4, 15, 341, 520
LpnPI CCDG 5 cut(s) 63, 90, 90, 320, 360
Lsp1109I GCAGC 2 cut(s) 217, 467
LweI GCATC 2 cut(s) 213, 318
MabI ACCWGGT 1 cut(s) 76
MaeI CTAG 2 cut(s) 113, 323
MalI GATC 1 cut(s) 219
MbiI CCGCTC 1 cut(s) 7
MboI GATC 1 cut(s) 217
MboII GAAGA 2 cut(s) 227, 518
MfeI CAATTG 1 cut(s) 171
MhlI GDGCHC 1 cut(s) 346
MluCI AATT 3 cut(s) 171, 190, 396
MmeI TCCRAC 1 cut(s) 319
MnlI CCTC 5 cut(s) 23, 157, 291, 366, 478
Mph1103I ATGCAT 1 cut(s) 228
MseI TTAA 2 cut(s) 126, 531
MslI CAYNNNNRTG 1 cut(s) 515
MspA1I CMGCKG 1 cut(s) 476
MspR9I CCNGG 1 cut(s) 78
MunI CAATTG 1 cut(s) 171
MvaI CCWGG 1 cut(s) 78
MwoI GCNNNNNNNGC 2 cut(s) 328, 361
NcoI CCATGG 2 cut(s) 118, 516
NdeII GATC 1 cut(s) 217
NlaIII CATG 4 cut(s) 122, 230, 427, 520
NlaIV GGNNCC 1 cut(s) 11
NsiI ATGCAT 1 cut(s) 228
NspI RCATGY 1 cut(s) 230
PaeI GCATGC 1 cut(s) 230
PflMI CCANNNNNTGG 1 cut(s) 338
PkrI GCNGC 4 cut(s) 9, 209, 232, 457
Psp6I CCWGG 1 cut(s) 76
PspGI CCWGG 1 cut(s) 76
PspN4I GGNNCC 1 cut(s) 11
PvuII CAGCTG 1 cut(s) 476
RsaI GTAC 2 cut(s) 145, 412
RsaNI GTAC 2 cut(s) 144, 411
RseI CAYNNNNRTG 1 cut(s) 515
SaqAI TTAA 2 cut(s) 126, 531
SatI GCNGC 4 cut(s) 8, 208, 231, 456
Sau3AI GATC 1 cut(s) 217
ScrFI CCNGG 1 cut(s) 78
SduI GDGCHC 1 cut(s) 346
SexAI ACCWGGT 1 cut(s) 76
SfaNI GCATC 2 cut(s) 213, 318
SmiMI CAYNNNNRTG 1 cut(s) 515
SmlI CTYRAG 1 cut(s) 359
SmoI CTYRAG 1 cut(s) 359
SphI GCATGC 1 cut(s) 230
Sse9I AATT 3 cut(s) 171, 190, 396
SsiI CCGC 2 cut(s) 7, 208
SspMI CTAG 2 cut(s) 113, 323
StyD4I CCNGG 1 cut(s) 76
StyI CCWWGG 2 cut(s) 118, 516
TaaI ACNGT 1 cut(s) 410
TaqI TCGA 2 cut(s) 550, 561
TasI AATT 3 cut(s) 171, 190, 396
TauI GCSGC 2 cut(s) 10, 210
Tru1I TTAA 2 cut(s) 126, 531
Tru9I TTAA 2 cut(s) 126, 531
TscAI CASTG 2 cut(s) 339, 517
TseI GCWGC 2 cut(s) 230, 455
TspDTI ATGAA 2 cut(s) 228, 440
TspGWI ACGGA 1 cut(s) 330
TspRI CASTG 2 cut(s) 339, 517
Van91I CCANNNNNTGG 1 cut(s) 338
XceI RCATGY 1 cut(s) 230
XmiI GTMKAC 1 cut(s) 584
XspI CTAG 2 cut(s) 113, 323
Zsp2I ATGCAT 1 cut(s) 228
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.