Rorug06G0054700

Alcohol dehydrogenase GroES-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0000167
Physical Location & Seq
Reverse (-)
7535326 .. 7537269
1944 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0054700.1

Sequence Viewer

Length: 444 bp
ATGGCAACACACGGTGGCTCTTCCTCTTCTCCTCCTCCTCCTCAGGAAAACCCAATTGTAGAAGACGACTTAGACTTGCTATATGGAGCTGAATCGGGTTGGGTCGATGCTCGCACATCCTGCGATCACCTGCCTTCTCTCTCCTCCGATCTTGTTCACATTCCCACCCCTGATACTCACTGCAACAGATGCCAGCACCCAAATGAGAACTGGTTGTGTTTATGCTGTAAGGAAGTCCTCTGCAGCCGTTTTGTAAACAAGCATATGCTGCAGCATTATCAGCAGATAAATCATTGTGTTGCTCTTAGCTACAGTGATCTCTCGGTTTGGTGTTTCTCCTGCGATGCATATTTAGATGCTCAATTGATCCCACAACTGCGGCCTGTATATGAAACTGCATACCTGCTGAAGTTTGGCGAGGCCCCGCCAGTCCGTTCGGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
ADH_N ADH_zinc_N

Protein Analysis

147

Amino Acids

16.49

Weight (kDa)

5.13

Isoelectric Point (pI)

56.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-UBP PF02148 61 - 120 7e-18 Zn-finger in ubiquitin-hydrolases and other protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000167)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G37980 AT4G37980 AT4G37990
fragaria_vesca FvH4_1g19210 FvH4_1g19220 FvH4_1g19240 FvH4_1g19240 FvH4_1g19261 FvH4_1g19262 FvH4_1g19263 FvH4_1g19263 FvH4_1g19265 FvH4_1g19281 FvH4_1g19281 FvH4_7g07240 FvH4_7g07240 FvH4_7g07240
malus_domestica MD01G1042500.v1.1 MD01G1042600.v1.1 MD01G1042800.v1.1 MD01G1042900.v1.1 MD05G1034100.v1.1 MD10G1035900.v1.1 MD10G1036000.v1.1 MD10G1155000.v1.1 MD10G1155100.v1.1 MD10G1155200.v1.1 MD10G1155400.v1.1 MD10G1155700.v1.1 MD10G1155800.v1.1 MD15G1308800.v1.1 MD15G1308900.v1.1
prunus_persica Prupe.6G205600_v2.0.a1 Prupe.6G205700_v2.0.a1 Prupe.6G205800_v2.0.a1 Prupe.6G205900_v2.0.a1 Prupe.6G206300_v2.0.a1 Prupe.6G206800_v2.0.a1 Prupe.6G207100_v2.0.a1 Prupe.6G207200_v2.0.a1 Prupe.6G207300_v2.0.a1 Prupe.6G207400_v2.0.a1 Prupe.6G207500_v2.0.a1 Prupe.6G207600_v2.0.a1 Prupe.6G207700_v2.0.a1 Prupe.6G207900_v2.0.a1
pyrus_communis pycom01g06970 pycom01g06980 pycom01g06990 pycom05g02460 pycom08g00750 pycom10g13410 pycom15g27310 pycom15g27320
rosa_chinensis RchiOBHm_Chr1g0314861 RchiOBHm_Chr1g0345441 RchiOBHm_Chr1g0345451 RchiOBHm_Chr1g0345621 RchiOBHm_Chr1g0345751 RchiOBHm_Chr1g0345861 RchiOBHm_Chr1g0345871 RchiOBHm_Chr1g0345891 RchiOBHm_Chr2g0094851 RchiOBHm_Chr2g0110471 RchiOBHm_Chr2g0110511 RchiOBHm_Chr2g0110531 RchiOBHm_Chr2g0110541 RchiOBHm_Chr2g0110571 RchiOBHm_Chr5g0039381 RchiOBHm_Chr5g0039391 RchiOBHm_Chr6g0270311 RchiOBHm_Chr6g0270331 RchiOBHm_Chr6g0270411 RchiOBHm_Chr6g0270431
rosa_laevigata RLG00000000515 RLG00000013793 RLG00000013797 RLG00000013799 RLG00000016525 RLG00000017808 RLG00000017811 RLG00000017813 RLG00000017816 RLG00000017819 RLG00000017822 RLG00000017824 RLG00000017825 RLG00000028835
rosa_multiflora Rmu_co8225458.1_g000001 Rmu_sc0000389.1_g000006 Rmu_sc0000389.1_g000014 Rmu_sc0000389.1_g000023 Rmu_sc0001292.1_g000012 Rmu_sc0001292.1_g000026 Rmu_sc0002145.1_g000003 Rmu_sc0002329.1_g000033 Rmu_sc0002833.1_g000044 Rmu_sc0004316.1_g000012 Rmu_sc0004439.1_g000003 Rmu_sc0006422.1_g000028 Rmu_sc0009479.1_g000012 Rmu_sc0010489.1_g000009 Rmu_sc0010489.1_g000010 Rmu_sc0017837.1_g000003 Rmu_sc0032320.1_g000001
rosa_roxburghii Rroxscaffold_1G00050770 Rroxscaffold_2G00133110 Rroxscaffold_2G00133140 Rroxscaffold_2G00133200 Rroxscaffold_2G00133270 Rroxscaffold_2G00133290 Rroxscaffold_2G00133300 Rroxscaffold_2G00133350 Rroxscaffold_4G00292490 Rroxscaffold_4G00309020 Rroxscaffold_4G00331740 Rroxscaffold_4G00331800 Rroxscaffold_6G00404470 Rroxscaffold_7G00197950 Rroxscaffold_7G00197990 Rroxscaffold_7G00198020
rosa_rugosa Rorug01G0002500 Rorug02G0047200 Rorug02G0047300 Rorug02G0047300 Rorug02G0047400 Rorug02G0168000 Rorug02G0168000 Rorug02G0168100 Rorug02G0168100 Rorug02G0168400.1 Rorug03G0157600 Rorug03G0157700 Rorug05G0112600 Rorug06G0054600 Rorug06G0054700
rosa_samantha Rh1AG013300 Rh1AG195600 Rh1AG195700 Rh1AG196000 Rh1BG004900 Rh1BG114300 Rh2AG132300 Rh2BG095500 Rh2BG229700 Rh2BG229800 Rh2CG097400 Rh2CG221500 Rh2CG221800 Rh2CG222100 Rh2CG222200 Rh2CG222500 Rh2CG222600 Rh2CG345000 Rh5BG269700 Rh6AG172900 Rh6AG173100 Rh6CG080500 Rh6DG075900 Rh6DG164700 Rh6DG164900 Rh6DG165200 Rh6DG165300
rosa_wichuraiana Rw0G015390 Rw1G000600 Rw1G016130 Rw1G016190 Rw2G007140 Rw2G016970 Rw2G016990 Rw2G017000 Rw3G018910 Rw3G018920 Rw3G018930 Rw5G024830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 138
Acc36I ACCTGC 2 cut(s) 138, 411
AciI CCGC 2 cut(s) 379, 425
AclWI GGATC 1 cut(s) 361
AcuI CTGAAG 1 cut(s) 428
AdeI CACNNNGTG 1 cut(s) 14
AluBI AGCT 2 cut(s) 89, 309
AluI AGCT 2 cut(s) 89, 309
AlwI GGATC 1 cut(s) 361
AoxI GGCC 2 cut(s) 380, 420
ApeKI GCWGC 3 cut(s) 243, 268, 271
AspS9I GGNCC 1 cut(s) 421
AsuHPI GGTGA 1 cut(s) 119
AxyI CCTNAGG 1 cut(s) 42
BbsI GAAGAC 1 cut(s) 69
BbvI GCAGC 3 cut(s) 255, 255, 283
BceAI ACGGC 1 cut(s) 231
BfmI CTRYAG 3 cut(s) 241, 269, 310
BfuAI ACCTGC 2 cut(s) 138, 411
BisI GCNGC 4 cut(s) 244, 269, 272, 380
BlsI GCNGC 4 cut(s) 245, 270, 273, 381
BmgT120I GGNCC 1 cut(s) 421
BmiI GGNNCC 1 cut(s) 423
BmsI GCATC 4 cut(s) 97, 179, 334, 346
BpiI GAAGAC 1 cut(s) 69
Bse1I ACTGG 2 cut(s) 215, 428
Bse21I CCTNAGG 1 cut(s) 42
BseGI GGATG 1 cut(s) 116
BseMII CTCAG 1 cut(s) 56
BseNI ACTGG 2 cut(s) 215, 428
BseRI GAGGAG 5 cut(s) 21, 24, 27, 30, 133
BseXI GCAGC 3 cut(s) 255, 255, 283
BshFI GGCC 2 cut(s) 382, 422
BsnI GGCC 2 cut(s) 382, 422
Bsp143I GATC 4 cut(s) 124, 148, 316, 366
BspACI CCGC 2 cut(s) 379, 425
BspANI GGCC 2 cut(s) 382, 422
BspCNI CTCAG 1 cut(s) 55
BspLI GGNNCC 1 cut(s) 423
BspMAI CTGCAG 2 cut(s) 245, 273
BspMI ACCTGC 2 cut(s) 138, 411
BspPI GGATC 1 cut(s) 361
BspQI GCTCTTC 1 cut(s) 25
BsrI ACTGG 2 cut(s) 215, 428
BssMI GATC 4 cut(s) 124, 148, 316, 366
Bst4CI ACNGT 2 cut(s) 14, 314
Bst6I CTCTTC 2 cut(s) 25, 31
BstAPI GCANNNNNTGC 3 cut(s) 120, 189, 268
BstC8I GCNNGC 2 cut(s) 112, 194
BstDEI CTNAG 3 cut(s) 42, 70, 305
BstF5I GGATG 1 cut(s) 116
BstKTI GATC 4 cut(s) 127, 151, 319, 369
BstMBI GATC 4 cut(s) 124, 148, 316, 366
BstMWI GCNNNNNNNGC 4 cut(s) 120, 189, 268, 280
BstSFI CTRYAG 3 cut(s) 241, 269, 310
BstV1I GCAGC 3 cut(s) 255, 255, 283
BstV2I GAAGAC 1 cut(s) 69
Bsu36I CCTNAGG 1 cut(s) 42
BsuRI GGCC 2 cut(s) 382, 422
BtgZI GCGATG 1 cut(s) 357
BtsCI GGATG 1 cut(s) 116
BtsI GCAGTG 1 cut(s) 178
BtsIMutI CAGTG 2 cut(s) 178, 319
BveI ACCTGC 2 cut(s) 138, 411
Cac8I GCNNGC 2 cut(s) 112, 194
Cfr13I GGNCC 1 cut(s) 421
CviJI RGCY 6 cut(s) 18, 89, 246, 309, 382, 422
CviKI_1 RGCY 6 cut(s) 18, 89, 246, 309, 382, 422
DdeI CTNAG 3 cut(s) 42, 70, 305
DpnI GATC 4 cut(s) 126, 150, 318, 368
DpnII GATC 4 cut(s) 124, 148, 316, 366
DraIII CACNNNGTG 1 cut(s) 14
Eam1104I CTCTTC 2 cut(s) 25, 31
EarI CTCTTC 2 cut(s) 25, 31
Eco57I CTGAAG 1 cut(s) 428
Eco81I CCTNAGG 1 cut(s) 42
EcoO109I RGGNCCY 1 cut(s) 421
EcoT22I ATGCAT 1 cut(s) 349
FaiI YATR 9 cut(s) 82, 84, 223, 264, 266, 349, 388, 390, 400
FauI CCCGC 1 cut(s) 432
FauNDI CATATG 1 cut(s) 264
Fnu4HI GCNGC 4 cut(s) 244, 269, 272, 380
FokI GGATG 1 cut(s) 103
Fsp4HI GCNGC 4 cut(s) 244, 269, 272, 380
GluI GCNGC 4 cut(s) 244, 269, 272, 380
HaeIII GGCC 2 cut(s) 382, 422
HinfI GANTC 1 cut(s) 92
HphI GGTGA 1 cut(s) 119
Hpy166II GTNNAC 2 cut(s) 157, 256
Hpy188I TCNGA 1 cut(s) 148
Hpy188III TCNNGA 1 cut(s) 44
Hpy8I GTNNAC 2 cut(s) 157, 256
HpyAV CCTTC 1 cut(s) 144
HpyCH4III ACNGT 2 cut(s) 14, 314
HpyCH4V TGCA 5 cut(s) 183, 243, 271, 347, 398
HpyF10VI GCNNNNNNNGC 4 cut(s) 120, 189, 268, 280
HpyF3I CTNAG 3 cut(s) 42, 70, 305
Kzo9I GATC 4 cut(s) 124, 148, 316, 366
LguI GCTCTTC 1 cut(s) 25
LmnI GCTCC 1 cut(s) 86
LpnPI CCDG 9 cut(s) 29, 133, 143, 183, 196, 206, 352, 396, 416
Lsp1109I GCAGC 3 cut(s) 255, 255, 283
LweI GCATC 4 cut(s) 97, 179, 334, 346
MalI GATC 4 cut(s) 126, 150, 318, 368
MboI GATC 4 cut(s) 124, 148, 316, 366
MboII GAAGA 3 cut(s) 12, 18, 74
MfeI CAATTG 2 cut(s) 54, 362
MluCI AATT 2 cut(s) 54, 362
MnlI CCTC 8 cut(s) 34, 42, 45, 48, 51, 154, 248, 412
Mph1103I ATGCAT 1 cut(s) 349
MseI TTAA 1 cut(s) 442
MslI CAYNNNNRTG 1 cut(s) 201
MunI CAATTG 2 cut(s) 54, 362
MwoI GCNNNNNNNGC 4 cut(s) 120, 189, 268, 280
NdeI CATATG 1 cut(s) 264
NdeII GATC 4 cut(s) 124, 148, 316, 366
NlaIV GGNNCC 1 cut(s) 423
NsiI ATGCAT 1 cut(s) 349
PaqCI CACCTGC 1 cut(s) 138
PciSI GCTCTTC 1 cut(s) 25
PfeI GAWTC 1 cut(s) 92
PkrI GCNGC 4 cut(s) 245, 270, 273, 381
PspN4I GGNNCC 1 cut(s) 423
PspPI GGNCC 1 cut(s) 421
PstI CTGCAG 2 cut(s) 245, 273
RseI CAYNNNNRTG 1 cut(s) 201
SapI GCTCTTC 1 cut(s) 25
SaqAI TTAA 1 cut(s) 442
SatI GCNGC 4 cut(s) 244, 269, 272, 380
Sau3AI GATC 4 cut(s) 124, 148, 316, 366
Sau96I GGNCC 1 cut(s) 421
SetI ASST 4 cut(s) 91, 132, 311, 405
SfaNI GCATC 4 cut(s) 97, 179, 334, 346
SfcI CTRYAG 3 cut(s) 241, 269, 310
SmiMI CAYNNNNRTG 1 cut(s) 201
Sse9I AATT 2 cut(s) 54, 362
SsiI CCGC 2 cut(s) 379, 425
TaaI ACNGT 2 cut(s) 14, 314
TaqI TCGA 1 cut(s) 105
TasI AATT 2 cut(s) 54, 362
TauI GCSGC 1 cut(s) 382
TfiI GAWTC 1 cut(s) 92
Tru1I TTAA 1 cut(s) 442
Tru9I TTAA 1 cut(s) 442
TscAI CASTG 2 cut(s) 185, 319
TseI GCWGC 3 cut(s) 243, 268, 271
TspDTI ATGAA 1 cut(s) 405
TspGWI ACGGA 1 cut(s) 422
TspRI CASTG 2 cut(s) 185, 319
XcmI CCANNNNNNNNNTGG 1 cut(s) 207
Zsp2I ATGCAT 1 cut(s) 349
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.