MD10G1155800.v1.1

Dehydrogenase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
OG0000167
Physical Location & Seq
Reverse (-)
24380779 .. 24381326
548 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1155800.v1.1.491

Sequence Viewer

Length: 408 bp
ATGTTCAAAGTGTTATACTGTGGGATATGCCATTCGGACCTTCATGAGCCCAAGAACGAATGGGGAATGTCTAACTATCCATTGGTTCCCGGACATGAGATTGTTGGTGTAGTGACAGAGGTAGGGAGCAAAGTACAAAAATTCAATGTTGGAGACAAGGTAGGTGTTGGATGCATGGTGGGATCATGTAAATCTTGTGAAAGTTGTTCCAACAATCTTGAAAATTACTGCCCCAAATCGATACTTACTTACGGTTCCAAGTACTACGATGAAACCACCACATACGGAGGTTACTCTGACATCATGGTGGCCAATGAGCACTTTGTAGTCCGTATCCCAGACAACCTTTCCCTTGATGGAGCGGTTCCTCTCCTATGCGCTGAGCCCTTTGAGATATTTCGGACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
ADH_N ADH_zinc_N

Protein Analysis

136

Amino Acids

14.89

Weight (kDa)

5.08

Isoelectric Point (pI)

29.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ADH_N PF08240 3 - 114 7.4e-26 Alcohol dehydrogenase GroES-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000167)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G37980 AT4G37980 AT4G37990
fragaria_vesca FvH4_1g19210 FvH4_1g19220 FvH4_1g19240 FvH4_1g19240 FvH4_1g19261 FvH4_1g19262 FvH4_1g19263 FvH4_1g19263 FvH4_1g19265 FvH4_1g19281 FvH4_1g19281 FvH4_7g07240 FvH4_7g07240 FvH4_7g07240
malus_domestica MD01G1042500.v1.1 MD01G1042600.v1.1 MD01G1042800.v1.1 MD01G1042900.v1.1 MD05G1034100.v1.1 MD10G1035900.v1.1 MD10G1036000.v1.1 MD10G1155000.v1.1 MD10G1155100.v1.1 MD10G1155200.v1.1 MD10G1155400.v1.1 MD10G1155700.v1.1 MD10G1155800.v1.1 MD15G1308800.v1.1 MD15G1308900.v1.1
prunus_persica Prupe.6G205600_v2.0.a1 Prupe.6G205700_v2.0.a1 Prupe.6G205800_v2.0.a1 Prupe.6G205900_v2.0.a1 Prupe.6G206300_v2.0.a1 Prupe.6G206800_v2.0.a1 Prupe.6G207100_v2.0.a1 Prupe.6G207200_v2.0.a1 Prupe.6G207300_v2.0.a1 Prupe.6G207400_v2.0.a1 Prupe.6G207500_v2.0.a1 Prupe.6G207600_v2.0.a1 Prupe.6G207700_v2.0.a1 Prupe.6G207900_v2.0.a1
pyrus_communis pycom01g06970 pycom01g06980 pycom01g06990 pycom05g02460 pycom08g00750 pycom10g13410 pycom15g27310 pycom15g27320
rosa_chinensis RchiOBHm_Chr1g0314861 RchiOBHm_Chr1g0345441 RchiOBHm_Chr1g0345451 RchiOBHm_Chr1g0345621 RchiOBHm_Chr1g0345751 RchiOBHm_Chr1g0345861 RchiOBHm_Chr1g0345871 RchiOBHm_Chr1g0345891 RchiOBHm_Chr2g0094851 RchiOBHm_Chr2g0110471 RchiOBHm_Chr2g0110511 RchiOBHm_Chr2g0110531 RchiOBHm_Chr2g0110541 RchiOBHm_Chr2g0110571 RchiOBHm_Chr5g0039381 RchiOBHm_Chr5g0039391 RchiOBHm_Chr6g0270311 RchiOBHm_Chr6g0270331 RchiOBHm_Chr6g0270411 RchiOBHm_Chr6g0270431
rosa_laevigata RLG00000000515 RLG00000013793 RLG00000013797 RLG00000013799 RLG00000016525 RLG00000017808 RLG00000017811 RLG00000017813 RLG00000017816 RLG00000017819 RLG00000017822 RLG00000017824 RLG00000017825 RLG00000028835
rosa_multiflora Rmu_co8225458.1_g000001 Rmu_sc0000389.1_g000006 Rmu_sc0000389.1_g000014 Rmu_sc0000389.1_g000023 Rmu_sc0001292.1_g000012 Rmu_sc0001292.1_g000026 Rmu_sc0002145.1_g000003 Rmu_sc0002329.1_g000033 Rmu_sc0002833.1_g000044 Rmu_sc0004316.1_g000012 Rmu_sc0004439.1_g000003 Rmu_sc0006422.1_g000028 Rmu_sc0009479.1_g000012 Rmu_sc0010489.1_g000009 Rmu_sc0010489.1_g000010 Rmu_sc0017837.1_g000003 Rmu_sc0032320.1_g000001
rosa_roxburghii Rroxscaffold_1G00050770 Rroxscaffold_2G00133110 Rroxscaffold_2G00133140 Rroxscaffold_2G00133200 Rroxscaffold_2G00133270 Rroxscaffold_2G00133290 Rroxscaffold_2G00133300 Rroxscaffold_2G00133350 Rroxscaffold_4G00292490 Rroxscaffold_4G00309020 Rroxscaffold_4G00331740 Rroxscaffold_4G00331800 Rroxscaffold_6G00404470 Rroxscaffold_7G00197950 Rroxscaffold_7G00197990 Rroxscaffold_7G00198020
rosa_rugosa Rorug01G0002500 Rorug02G0047200 Rorug02G0047300 Rorug02G0047300 Rorug02G0047400 Rorug02G0168000 Rorug02G0168000 Rorug02G0168100 Rorug02G0168100 Rorug02G0168400.1 Rorug03G0157600 Rorug03G0157700 Rorug05G0112600 Rorug06G0054600 Rorug06G0054700
rosa_samantha Rh1AG013300 Rh1AG195600 Rh1AG195700 Rh1AG196000 Rh1BG004900 Rh1BG114300 Rh2AG132300 Rh2BG095500 Rh2BG229700 Rh2BG229800 Rh2CG097400 Rh2CG221500 Rh2CG221800 Rh2CG222100 Rh2CG222200 Rh2CG222500 Rh2CG222600 Rh2CG345000 Rh5BG269700 Rh6AG172900 Rh6AG173100 Rh6CG080500 Rh6DG075900 Rh6DG164700 Rh6DG164900 Rh6DG165200 Rh6DG165300
rosa_wichuraiana Rw0G015390 Rw1G000600 Rw1G016130 Rw1G016190 Rw2G007140 Rw2G016970 Rw2G016990 Rw2G017000 Rw3G018910 Rw3G018920 Rw3G018930 Rw5G024830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 362
AciI CCGC 1 cut(s) 362
AclWI GGATC 1 cut(s) 190
AcoI YGGCCR 1 cut(s) 309
AcsI RAATTY 1 cut(s) 140
AfaI GTAC 2 cut(s) 135, 263
AgsI TTSAA 3 cut(s) 7, 145, 221
Alw21I GWGCWC 1 cut(s) 321
Alw26I GTCTC 1 cut(s) 147
AlwI GGATC 1 cut(s) 190
AoxI GGCC 1 cut(s) 309
ApoI RAATTY 1 cut(s) 140
AspLEI GCGC 1 cut(s) 380
AspS9I GGNCC 1 cut(s) 37
AsuC2I CCSGG 1 cut(s) 90
AvaII GGWCC 1 cut(s) 37
BalI TGGCCA 1 cut(s) 311
BanII GRGCYC 2 cut(s) 51, 387
Bbv12I GWGCWC 1 cut(s) 321
BccI CCATC 1 cut(s) 350
BciVI GTATCC 1 cut(s) 344
BcnI CCSGG 1 cut(s) 90
BcoDI GTCTC 1 cut(s) 147
BfuI GTATCC 1 cut(s) 344
BlpI GCTNAGC 1 cut(s) 381
BmcAI AGTACT 1 cut(s) 263
Bme1390I CCNGG 1 cut(s) 90
Bme18I GGWCC 1 cut(s) 37
BmgT120I GGNCC 1 cut(s) 37
BmiI GGNNCC 3 cut(s) 87, 256, 366
BmrFI CCNGG 1 cut(s) 90
BmsI GCATC 1 cut(s) 161
Bpu1102I GCTNAGC 1 cut(s) 381
BpuMI CCSGG 1 cut(s) 90
Bsa29I ATCGAT 1 cut(s) 239
BsaXI ACNNNNNCTCC 2 cut(s) 144, 174
BseCI ATCGAT 1 cut(s) 239
BseGI GGATG 1 cut(s) 176
BseMII CTCAG 1 cut(s) 372
BshFI GGCC 1 cut(s) 311
BshVI ATCGAT 1 cut(s) 239
BsiHKAI GWGCWC 1 cut(s) 321
BsiSI CCGG 1 cut(s) 90
BsmAI GTCTC 1 cut(s) 147
BsnI GGCC 1 cut(s) 311
Bsp1286I GDGCHC 3 cut(s) 51, 321, 387
Bsp143I GATC 1 cut(s) 182
Bsp1720I GCTNAGC 1 cut(s) 381
BspACI CCGC 1 cut(s) 362
BspANI GGCC 1 cut(s) 311
BspCNI CTCAG 1 cut(s) 373
BspDI ATCGAT 1 cut(s) 239
BspHI TCATGA 1 cut(s) 43
BspLI GGNNCC 3 cut(s) 87, 256, 366
BspPI GGATC 1 cut(s) 190
BsrBI CCGCTC 1 cut(s) 362
BssMI GATC 1 cut(s) 182
Bst4CI ACNGT 2 cut(s) 20, 254
BstDEI CTNAG 1 cut(s) 381
BstF5I GGATG 1 cut(s) 176
BstHHI GCGC 1 cut(s) 380
BstKTI GATC 1 cut(s) 185
BstMAI GTCTC 1 cut(s) 147
BstMBI GATC 1 cut(s) 182
BstSCI CCNGG 1 cut(s) 88
Bsu15I ATCGAT 1 cut(s) 239
BsuI GTATCC 1 cut(s) 344
BsuRI GGCC 1 cut(s) 311
BsuTUI ATCGAT 1 cut(s) 239
BtsCI GGATG 1 cut(s) 176
CciI TCATGA 1 cut(s) 43
CfoI GCGC 1 cut(s) 380
Cfr13I GGNCC 1 cut(s) 37
ClaI ATCGAT 1 cut(s) 239
Csp6I GTAC 2 cut(s) 134, 262
CviAII CATG 5 cut(s) 44, 95, 175, 186, 304
CviJI RGCY 3 cut(s) 49, 311, 385
CviKI_1 RGCY 3 cut(s) 49, 311, 385
CviQI GTAC 2 cut(s) 134, 262
DdeI CTNAG 1 cut(s) 381
DpnI GATC 1 cut(s) 184
DpnII GATC 1 cut(s) 182
EaeI YGGCCR 1 cut(s) 309
Eco24I GRGCYC 2 cut(s) 51, 387
Eco47I GGWCC 1 cut(s) 37
EcoT22I ATGCAT 1 cut(s) 176
EcoT38I GRGCYC 2 cut(s) 51, 387
FaeI CATG 5 cut(s) 47, 98, 178, 189, 307
FaiI YATR 9 cut(s) 16, 28, 45, 96, 176, 187, 283, 305, 376
FatI CATG 5 cut(s) 43, 94, 174, 185, 303
FokI GGATG 1 cut(s) 183
FriOI GRGCYC 2 cut(s) 51, 387
GlaI GCGC 1 cut(s) 379
HaeIII GGCC 1 cut(s) 311
HapII CCGG 1 cut(s) 90
HhaI GCGC 1 cut(s) 380
Hin1II CATG 5 cut(s) 47, 98, 178, 189, 307
Hin6I GCGC 1 cut(s) 378
HinP1I GCGC 1 cut(s) 378
HpaII CCGG 1 cut(s) 90
Hpy188I TCNGA 3 cut(s) 37, 298, 402
Hpy188III TCNNGA 2 cut(s) 44, 218
HpyAV CCTTC 1 cut(s) 50
HpyCH4III ACNGT 2 cut(s) 20, 254
HpyCH4V TGCA 1 cut(s) 174
HpyF3I CTNAG 1 cut(s) 381
Hsp92II CATG 5 cut(s) 47, 98, 178, 189, 307
HspAI GCGC 1 cut(s) 378
Kzo9I GATC 1 cut(s) 182
LmnI GCTCC 2 cut(s) 126, 359
LpnPI CCDG 2 cut(s) 103, 351
LweI GCATC 1 cut(s) 161
MaeIII GTNAC 2 cut(s) 112, 290
MalI GATC 1 cut(s) 184
MbiI CCGCTC 1 cut(s) 362
MboI GATC 1 cut(s) 182
MhlI GDGCHC 3 cut(s) 51, 321, 387
MlsI TGGCCA 1 cut(s) 311
MluCI AATT 2 cut(s) 140, 223
MluNI TGGCCA 1 cut(s) 311
MmeI TCCRAC 3 cut(s) 130, 148, 234
MnlI CCTC 3 cut(s) 112, 281, 378
Mox20I TGGCCA 1 cut(s) 311
Mph1103I ATGCAT 1 cut(s) 176
MscI TGGCCA 1 cut(s) 311
MslI CAYNNNNRTG 1 cut(s) 305
Msp20I TGGCCA 1 cut(s) 311
MspI CCGG 1 cut(s) 90
MspR9I CCNGG 1 cut(s) 90
NciI CCSGG 1 cut(s) 90
NdeII GATC 1 cut(s) 182
NlaIII CATG 5 cut(s) 47, 98, 178, 189, 307
NlaIV GGNNCC 3 cut(s) 87, 256, 366
NmuCI GTSAC 1 cut(s) 112
NsiI ATGCAT 1 cut(s) 176
PagI TCATGA 1 cut(s) 43
PfoI TCCNGGA 1 cut(s) 88
PspN4I GGNNCC 3 cut(s) 87, 256, 366
PspPI GGNCC 1 cut(s) 37
RsaI GTAC 2 cut(s) 135, 263
RsaNI GTAC 2 cut(s) 134, 262
RseI CAYNNNNRTG 1 cut(s) 305
Sau3AI GATC 1 cut(s) 182
Sau96I GGNCC 1 cut(s) 37
ScaI AGTACT 1 cut(s) 263
ScrFI CCNGG 1 cut(s) 90
SduI GDGCHC 3 cut(s) 51, 321, 387
SetI ASST 6 cut(s) 42, 123, 162, 166, 292, 348
SfaNI GCATC 1 cut(s) 161
SinI GGWCC 1 cut(s) 37
SmiMI CAYNNNNRTG 1 cut(s) 305
Sse9I AATT 2 cut(s) 140, 223
SsiI CCGC 1 cut(s) 362
StyD4I CCNGG 1 cut(s) 88
TaaI ACNGT 2 cut(s) 20, 254
TaqI TCGA 1 cut(s) 239
TasI AATT 2 cut(s) 140, 223
TatI WGTACW 2 cut(s) 133, 261
TseFI GTSAC 1 cut(s) 112
Tsp45I GTSAC 1 cut(s) 112
TspDTI ATGAA 2 cut(s) 32, 285
TspGWI ACGGA 2 cut(s) 300, 320
VpaK11BI GGWCC 1 cut(s) 37
XapI RAATTY 1 cut(s) 140
ZrmI AGTACT 1 cut(s) 263
Zsp2I ATGCAT 1 cut(s) 176
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.