RLG00000017808

Dehydrogenase

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
Physical Location & Seq
Forward (+)
21587609 .. 21589843
2235 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000017808

Sequence Viewer

Length: 1086 bp
ATGGTGGCATCTCCAGACCAAGAACACCCCAAGAATTCCTTTGGATGGGCTGCCAGGGACACATCTGGTGTTCTCTCCCCATTCAATTTCTCAAGAAGGGAAACTGGTGAGAAAGATGTGGCCTTTAAAGTGTTGTACTGTGGGATATGCCATTCTGACCTTCACATGGCCAAGAATGAATGGGGTTCTACTACCTACCCTGTGGTTCCTGGGCATGAGATTGTTGGTGTAGTGACTGAGGTAGGGAGTAAAGTGCAGAACATCAAGGTTGGAGACAGGGTAGGTGTTGGATGCATGGTGGGATCTTGCCGATCTTGTGATAGTTGTGCCGATCACCTTGAAAACTACTGCCCCAAGATGATACTCACGTATGGTTCCAAGTACTTTGATGGAACCATGACGTACGGAGGTTACTCTGACATCATGGTGGCTGATGAGCATTTCATCGTTCGCATTCCTGAGAATCTCCCTCTTGATGGTGCTGCTCCCCTCCTATGTGCTGGCATTACAACTTACAGCCCCTTGAGACATTTTGGACTTGACAAACCTGGTATGCATGTGGGCGTGGTTGGTCTAGGCGGTCTAGGCCACGTGGCTGTGAAGTTTGCTAAGGCTCTGGGGGTTAAGGTTACAGTGATTAGTACCTCCCCTAAGAAGAAGGCAGAAGCTGTTGAACGACTCCATGCTGATTCATTTTTGGTCAGCAGTGACCAAAATGAGATGCAGGCCGCCATGGGCACAATGGATGGGATCATTGACACGGTTTCTGCATTCCACTCTCTCGTGCCTTTGATTGGTTTGTTGAAGGCTCATGGAAAACTTGTGATGGTTGGTGCACCAGAGAAGCCTCTTGAGCTTCCCGTTTTTCCTCTGATCATGGGAAGGAAGATTATAGGGGGTAGTTGTATTGGGGGTATGAAGGAGACACAGGAGATGATTGATTTTGCAGCCAAGCACAACATAACAGCTGACATTGAGGTTATCCCAATTGATTATCTGAACACTGCCATGGAGCGCCTTCTCAAAGCAGATGTCAGATATCGGTTTGTCATTGACATTGGAAACACATTGAAGGCCAGCTCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

362

Amino Acids

38.89

Weight (kDa)

6.35

Isoelectric Point (pI)

28.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ADH_N PF08240 37 - 154 1.9e-26 Alcohol dehydrogenase GroES-like domain
ADH_zinc_N PF00107 194 - 317 6.8e-20 Zinc-binding dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000167)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G37980 AT4G37980 AT4G37990
fragaria_vesca FvH4_1g19210 FvH4_1g19220 FvH4_1g19240 FvH4_1g19240 FvH4_1g19261 FvH4_1g19262 FvH4_1g19263 FvH4_1g19263 FvH4_1g19265 FvH4_1g19281 FvH4_1g19281 FvH4_7g07240 FvH4_7g07240 FvH4_7g07240
malus_domestica MD01G1042500.v1.1 MD01G1042600.v1.1 MD01G1042800.v1.1 MD01G1042900.v1.1 MD05G1034100.v1.1 MD10G1035900.v1.1 MD10G1036000.v1.1 MD10G1155000.v1.1 MD10G1155100.v1.1 MD10G1155200.v1.1 MD10G1155400.v1.1 MD10G1155700.v1.1 MD10G1155800.v1.1 MD15G1308800.v1.1 MD15G1308900.v1.1
prunus_persica Prupe.6G205600_v2.0.a1 Prupe.6G205700_v2.0.a1 Prupe.6G205800_v2.0.a1 Prupe.6G205900_v2.0.a1 Prupe.6G206300_v2.0.a1 Prupe.6G206800_v2.0.a1 Prupe.6G207100_v2.0.a1 Prupe.6G207200_v2.0.a1 Prupe.6G207300_v2.0.a1 Prupe.6G207400_v2.0.a1 Prupe.6G207500_v2.0.a1 Prupe.6G207600_v2.0.a1 Prupe.6G207700_v2.0.a1 Prupe.6G207900_v2.0.a1
pyrus_communis pycom01g06970 pycom01g06980 pycom01g06990 pycom05g02460 pycom08g00750 pycom10g13410 pycom15g27310 pycom15g27320
rosa_chinensis RchiOBHm_Chr1g0314861 RchiOBHm_Chr1g0345441 RchiOBHm_Chr1g0345451 RchiOBHm_Chr1g0345621 RchiOBHm_Chr1g0345751 RchiOBHm_Chr1g0345861 RchiOBHm_Chr1g0345871 RchiOBHm_Chr1g0345891 RchiOBHm_Chr2g0094851 RchiOBHm_Chr2g0110471 RchiOBHm_Chr2g0110511 RchiOBHm_Chr2g0110531 RchiOBHm_Chr2g0110541 RchiOBHm_Chr2g0110571 RchiOBHm_Chr5g0039381 RchiOBHm_Chr5g0039391 RchiOBHm_Chr6g0270311 RchiOBHm_Chr6g0270331 RchiOBHm_Chr6g0270411 RchiOBHm_Chr6g0270431
rosa_laevigata RLG00000000515 RLG00000013793 RLG00000013797 RLG00000013799 RLG00000016525 RLG00000017808 RLG00000017811 RLG00000017813 RLG00000017816 RLG00000017819 RLG00000017822 RLG00000017824 RLG00000017825 RLG00000028835
rosa_multiflora Rmu_co8225458.1_g000001 Rmu_sc0000389.1_g000006 Rmu_sc0000389.1_g000014 Rmu_sc0000389.1_g000023 Rmu_sc0001292.1_g000012 Rmu_sc0001292.1_g000026 Rmu_sc0002145.1_g000003 Rmu_sc0002329.1_g000033 Rmu_sc0002833.1_g000044 Rmu_sc0004316.1_g000012 Rmu_sc0004439.1_g000003 Rmu_sc0006422.1_g000028 Rmu_sc0009479.1_g000012 Rmu_sc0010489.1_g000009 Rmu_sc0010489.1_g000010 Rmu_sc0017837.1_g000003 Rmu_sc0032320.1_g000001
rosa_roxburghii Rroxscaffold_1G00050770 Rroxscaffold_2G00133110 Rroxscaffold_2G00133140 Rroxscaffold_2G00133200 Rroxscaffold_2G00133270 Rroxscaffold_2G00133290 Rroxscaffold_2G00133300 Rroxscaffold_2G00133350 Rroxscaffold_4G00292490 Rroxscaffold_4G00309020 Rroxscaffold_4G00331740 Rroxscaffold_4G00331800 Rroxscaffold_6G00404470 Rroxscaffold_7G00197950 Rroxscaffold_7G00197990 Rroxscaffold_7G00198020
rosa_rugosa Rorug01G0002500 Rorug02G0047200 Rorug02G0047300 Rorug02G0047300 Rorug02G0047400 Rorug02G0168000 Rorug02G0168000 Rorug02G0168100 Rorug02G0168100 Rorug02G0168400.1 Rorug03G0157600 Rorug03G0157700 Rorug05G0112600 Rorug06G0054600 Rorug06G0054700
rosa_samantha Rh1AG013300 Rh1AG195600 Rh1AG195700 Rh1AG196000 Rh1BG004900 Rh1BG114300 Rh2AG132300 Rh2BG095500 Rh2BG229700 Rh2BG229800 Rh2CG097400 Rh2CG221500 Rh2CG221800 Rh2CG222100 Rh2CG222200 Rh2CG222500 Rh2CG222600 Rh2CG345000 Rh5BG269700 Rh6AG172900 Rh6AG173100 Rh6CG080500 Rh6DG075900 Rh6DG164700 Rh6DG164900 Rh6DG165200 Rh6DG165300
rosa_wichuraiana Rw0G015390 Rw1G000600 Rw1G016130 Rw1G016190 Rw2G007140 Rw2G016970 Rw2G016990 Rw2G017000 Rw3G018910 Rw3G018920 Rw3G018930 Rw5G024830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 579, 729
AclWI GGATC 2 cut(s) 310, 758
AcoI YGGCCR 1 cut(s) 168
AcsI RAATTY 1 cut(s) 34
AcvI CACGTG 1 cut(s) 592
AfaI GTAC 4 cut(s) 137, 383, 404, 643
AfiI CCNNNNNNNGG 4 cut(s) 45, 166, 476, 794
AgsI TTSAA 5 cut(s) 85, 341, 674, 805, 1072
AjnI CCWGG 3 cut(s) 53, 208, 547
AluBI AGCT 4 cut(s) 668, 856, 968, 1080
AluI AGCT 4 cut(s) 668, 856, 968, 1080
Alw21I GWGCWC 1 cut(s) 838
Alw26I GTCTC 3 cut(s) 267, 520, 917
Alw44I GTGCAC 1 cut(s) 834
AlwI GGATC 2 cut(s) 310, 758
AlwNI CAGNNNCTG 2 cut(s) 668, 1083
AoxI GGCC 5 cut(s) 120, 168, 586, 726, 1074
ApaLI GTGCAC 1 cut(s) 834
ApeKI GCWGC 3 cut(s) 50, 482, 947
ApoI RAATTY 1 cut(s) 34
ArsI GACNNNNNNTTYG 2 cut(s) 1017, 1049
AspLEI GCGC 1 cut(s) 1017
AsuHPI GGTGA 2 cut(s) 119, 326
BaeGI GKGCMC 2 cut(s) 740, 838
BaeI ACNNNNGTAYC 2 cut(s) 353, 386
BalI TGGCCA 1 cut(s) 170
BauI CACGAG 1 cut(s) 782
BbrPI CACGTG 1 cut(s) 592
Bbv12I GWGCWC 1 cut(s) 838
BbvI GCAGC 3 cut(s) 37, 469, 959
BccI CCATC 5 cut(s) 39, 383, 470, 740, 820
BciT130I CCWGG 3 cut(s) 55, 210, 549
BclI TGATCA 1 cut(s) 873
BcoDI GTCTC 3 cut(s) 267, 520, 917
BfaI CTAG 2 cut(s) 575, 584
BfoI RGCGCY 1 cut(s) 1018
BisI GCNGC 4 cut(s) 51, 483, 729, 948
BlsI GCNGC 4 cut(s) 52, 484, 730, 949
BmcAI AGTACT 1 cut(s) 383
Bme1390I CCNGG 3 cut(s) 55, 210, 549
BmiI GGNNCC 3 cut(s) 207, 376, 394
BmrFI CCNGG 3 cut(s) 55, 210, 549
BmsI GCATC 3 cut(s) 17, 281, 711
Bpu10I CCTNAGC 1 cut(s) 609
BpuEI CTTGAG 3 cut(s) 76, 544, 872
BsaAI YACGTR 2 cut(s) 369, 592
BsaJI CCNNGG 4 cut(s) 54, 209, 732, 1008
BsaXI ACNNNNNCTCC 2 cut(s) 264, 294
Bsc4I CCNNNNNNNGG 4 cut(s) 45, 166, 476, 794
Bse1I ACTGG 1 cut(s) 109
BseBI CCWGG 3 cut(s) 55, 210, 549
BseDI CCNNGG 4 cut(s) 54, 209, 732, 1008
BseGI GGATG 3 cut(s) 50, 296, 751
BseLI CCNNNNNNNGG 4 cut(s) 45, 166, 476, 794
BseMII CTCAG 2 cut(s) 228, 450
BseNI ACTGG 1 cut(s) 109
BseSI GKGCMC 2 cut(s) 740, 838
BseXI GCAGC 3 cut(s) 37, 469, 959
BsgI GTGCAG 1 cut(s) 275
BshFI GGCC 5 cut(s) 122, 170, 588, 728, 1076
BsiHKAI GWGCWC 1 cut(s) 838
BsiWI CGTACG 1 cut(s) 402
BslFI GGGAC 1 cut(s) 71
BslI CCNNNNNNNGG 4 cut(s) 45, 166, 476, 794
BsmAI GTCTC 3 cut(s) 267, 520, 917
BsmFI GGGAC 1 cut(s) 71
BsmI GAATGC 2 cut(s) 453, 770
BsnI GGCC 5 cut(s) 122, 170, 588, 728, 1076
Bsp1286I GDGCHC 2 cut(s) 740, 838
Bsp143I GATC 5 cut(s) 302, 311, 331, 750, 873
Bsp19I CCATGG 2 cut(s) 732, 1008
BspACI CCGC 2 cut(s) 579, 729
BspANI GGCC 5 cut(s) 122, 170, 588, 728, 1076
BspCNI CTCAG 2 cut(s) 229, 451
BspLI GGNNCC 3 cut(s) 207, 376, 394
BspPI GGATC 2 cut(s) 310, 758
BsrI ACTGG 1 cut(s) 109
BssECI CCNNGG 4 cut(s) 54, 209, 732, 1008
BssMI GATC 5 cut(s) 302, 311, 331, 750, 873
BssSI CACGAG 1 cut(s) 782
BssT1I CCWWGG 2 cut(s) 732, 1008
Bst2BI CACGAG 1 cut(s) 782
Bst2UI CCWGG 3 cut(s) 55, 210, 549
Bst4CI ACNGT 3 cut(s) 140, 634, 763
BstBAI YACGTR 2 cut(s) 369, 592
BstC8I GCNNGC 3 cut(s) 502, 726, 1078
BstDEI CTNAG 4 cut(s) 237, 459, 609, 651
BstDSI CCRYGG 2 cut(s) 732, 1008
BstF5I GGATG 3 cut(s) 50, 296, 751
BstH2I RGCGCY 1 cut(s) 1018
BstHHI GCGC 1 cut(s) 1017
BstKTI GATC 5 cut(s) 305, 314, 334, 753, 876
BstMAI GTCTC 3 cut(s) 267, 520, 917
BstMBI GATC 5 cut(s) 302, 311, 331, 750, 873
BstMWI GCNNNNNNNGC 2 cut(s) 585, 853
BstNI CCWGG 3 cut(s) 55, 210, 549
BstNSI RCATGY 1 cut(s) 560
BstSCI CCNGG 3 cut(s) 53, 208, 547
BstSLI GKGCMC 2 cut(s) 740, 838
BstV1I GCAGC 3 cut(s) 37, 469, 959
BstX2I RGATCY 1 cut(s) 302
BstYI RGATCY 1 cut(s) 302
BsuRI GGCC 5 cut(s) 122, 170, 588, 728, 1076
BtgI CCRYGG 2 cut(s) 732, 1008
BtsCI GGATG 3 cut(s) 50, 296, 751
BtsI GCAGTG 2 cut(s) 712, 1002
BtsIMutI CAGTG 3 cut(s) 639, 712, 1002
Cac8I GCNNGC 3 cut(s) 502, 726, 1078
CaiI CAGNNNCTG 2 cut(s) 668, 1083
CfoI GCGC 1 cut(s) 1017
CsiI ACCWGGT 1 cut(s) 547
Csp6I GTAC 4 cut(s) 136, 382, 403, 642
CviQI GTAC 4 cut(s) 136, 382, 403, 642
DdeI CTNAG 4 cut(s) 237, 459, 609, 651
DpnI GATC 5 cut(s) 304, 313, 333, 752, 875
DpnII GATC 5 cut(s) 302, 311, 331, 750, 873
DraI TTTAAA 1 cut(s) 127
EaeI YGGCCR 1 cut(s) 168
Eco130I CCWWGG 2 cut(s) 732, 1008
Eco32I GATATC 1 cut(s) 1040
Eco72I CACGTG 1 cut(s) 592
EcoRI GAATTC 1 cut(s) 34
EcoRII CCWGG 3 cut(s) 53, 208, 547
EcoRV GATATC 1 cut(s) 1040
EcoT14I CCWWGG 2 cut(s) 732, 1008
EcoT22I ATGCAT 2 cut(s) 296, 558
ErhI CCWWGG 2 cut(s) 732, 1008
FalI AAGNNNNNCTT 2 cut(s) 23, 55
FaqI GGGAC 1 cut(s) 71
FbaI TGATCA 1 cut(s) 873
Fnu4HI GCNGC 4 cut(s) 51, 483, 729, 948
FokI GGATG 3 cut(s) 57, 303, 758
Fsp4HI GCNGC 4 cut(s) 51, 483, 729, 948
FspBI CTAG 2 cut(s) 575, 584
GlaI GCGC 1 cut(s) 1016
GluI GCNGC 4 cut(s) 51, 483, 729, 948
HaeII RGCGCY 1 cut(s) 1018
HaeIII GGCC 5 cut(s) 122, 170, 588, 728, 1076
HhaI GCGC 1 cut(s) 1017
Hin6I GCGC 1 cut(s) 1015
HinP1I GCGC 1 cut(s) 1015
HinfI GANTC 3 cut(s) 463, 678, 689
HphI GGTGA 2 cut(s) 119, 326
Hpy166II GTNNAC 1 cut(s) 836
Hpy188I TCNGA 5 cut(s) 157, 418, 873, 999, 1037
Hpy188III TCNNGA 6 cut(s) 14, 93, 458, 473, 851, 1083
Hpy8I GTNNAC 1 cut(s) 836
HpyAV CCTTC 8 cut(s) 90, 170, 652, 799, 876, 913, 1028, 1066
HpyCH4III ACNGT 3 cut(s) 140, 634, 763
HpyCH4IV ACGT 3 cut(s) 368, 401, 591
HpyCH4V TGCA 7 cut(s) 256, 294, 556, 724, 770, 836, 947
HpyF10VI GCNNNNNNNGC 2 cut(s) 585, 853
HpyF3I CTNAG 4 cut(s) 237, 459, 609, 651
HpySE526I ACGT 3 cut(s) 368, 401, 591
HspAI GCGC 1 cut(s) 1015
Ksp22I TGATCA 1 cut(s) 873
Kzo9I GATC 5 cut(s) 302, 311, 331, 750, 873
LmnI GCTCC 3 cut(s) 490, 1012, 1085
Lsp1109I GCAGC 3 cut(s) 37, 469, 959
LweI GCATC 3 cut(s) 17, 281, 711
MabI ACCWGGT 1 cut(s) 547
MaeI CTAG 2 cut(s) 575, 584
MaeII ACGT 3 cut(s) 368, 401, 591
MaeIII GTNAC 4 cut(s) 232, 410, 628, 707
MalI GATC 5 cut(s) 304, 313, 333, 752, 875
MboI GATC 5 cut(s) 302, 311, 331, 750, 873
MboII GAAGA 2 cut(s) 667, 898
MfeI CAATTG 1 cut(s) 987
MflI RGATCY 1 cut(s) 302
MhlI GDGCHC 2 cut(s) 740, 838
MlsI TGGCCA 1 cut(s) 170
MluCI AATT 3 cut(s) 34, 85, 987
MluNI TGGCCA 1 cut(s) 170
MlyI GAGTC 1 cut(s) 672
MmeI TCCRAC 2 cut(s) 250, 268
MnlI CCTC 8 cut(s) 232, 401, 480, 500, 655, 858, 879, 970
Mox20I TGGCCA 1 cut(s) 170
Mph1103I ATGCAT 2 cut(s) 296, 558
MscI TGGCCA 1 cut(s) 170
MseI TTAA 2 cut(s) 126, 624
MslI CAYNNNNRTG 2 cut(s) 425, 1007
Msp20I TGGCCA 1 cut(s) 170
MspA1I CMGCKG 1 cut(s) 968
MspR9I CCNGG 3 cut(s) 55, 210, 549
MunI CAATTG 1 cut(s) 987
Mva1269I GAATGC 2 cut(s) 453, 770
MvaI CCWGG 3 cut(s) 55, 210, 549
MwoI GCNNNNNNNGC 2 cut(s) 585, 853
NcoI CCATGG 2 cut(s) 732, 1008
NdeII GATC 5 cut(s) 302, 311, 331, 750, 873
NlaIV GGNNCC 3 cut(s) 207, 376, 394
NmuCI GTSAC 2 cut(s) 232, 707
NsiI ATGCAT 2 cut(s) 296, 558
NspI RCATGY 1 cut(s) 560
PctI GAATGC 2 cut(s) 453, 770
PfeI GAWTC 2 cut(s) 463, 689
Pfl23II CGTACG 1 cut(s) 402
PkrI GCNGC 4 cut(s) 52, 484, 730, 949
PleI GAGTC 1 cut(s) 672
PmaCI CACGTG 1 cut(s) 592
PmlI CACGTG 1 cut(s) 592
PpsI GAGTC 1 cut(s) 672
Ppu21I YACGTR 2 cut(s) 369, 592
Psp6I CCWGG 3 cut(s) 53, 208, 547
PspCI CACGTG 1 cut(s) 592
PspGI CCWGG 3 cut(s) 53, 208, 547
PspLI CGTACG 1 cut(s) 402
PspN4I GGNNCC 3 cut(s) 207, 376, 394
PstNI CAGNNNCTG 2 cut(s) 668, 1083
PsuI RGATCY 1 cut(s) 302
PvuII CAGCTG 1 cut(s) 968
RsaI GTAC 4 cut(s) 137, 383, 404, 643
RsaNI GTAC 4 cut(s) 136, 382, 403, 642
RseI CAYNNNNRTG 2 cut(s) 425, 1007
SaqAI TTAA 2 cut(s) 126, 624
SatI GCNGC 4 cut(s) 51, 483, 729, 948
Sau3AI GATC 5 cut(s) 302, 311, 331, 750, 873
ScaI AGTACT 1 cut(s) 383
SchI GAGTC 1 cut(s) 672
ScrFI CCNGG 3 cut(s) 55, 210, 549
SduI GDGCHC 2 cut(s) 740, 838
SexAI ACCWGGT 1 cut(s) 547
SfaNI GCATC 3 cut(s) 17, 281, 711
SmiMI CAYNNNNRTG 2 cut(s) 425, 1007
SmlI CTYRAG 3 cut(s) 91, 523, 851
SmoI CTYRAG 3 cut(s) 91, 523, 851
Sse9I AATT 3 cut(s) 34, 85, 987
SsiI CCGC 2 cut(s) 579, 729
SspMI CTAG 2 cut(s) 575, 584
StyD4I CCNGG 3 cut(s) 53, 208, 547
StyI CCWWGG 2 cut(s) 732, 1008
TaaI ACNGT 3 cut(s) 140, 634, 763
TaiI ACGT 3 cut(s) 371, 404, 594
TasI AATT 3 cut(s) 34, 85, 987
TatI WGTACW 2 cut(s) 135, 381
TauI GCSGC 1 cut(s) 731
TfiI GAWTC 2 cut(s) 463, 689
Tru1I TTAA 2 cut(s) 126, 624
Tru9I TTAA 2 cut(s) 126, 624
TscAI CASTG 3 cut(s) 639, 712, 1009
TseFI GTSAC 2 cut(s) 232, 707
TseI GCWGC 3 cut(s) 50, 482, 947
Tsp45I GTSAC 2 cut(s) 232, 707
TspDTI ATGAA 4 cut(s) 192, 433, 681, 932
TspGWI ACGGA 1 cut(s) 420
TspRI CASTG 3 cut(s) 639, 712, 1009
VneI GTGCAC 1 cut(s) 834
XapI RAATTY 1 cut(s) 34
XceI RCATGY 1 cut(s) 560
XcmI CCANNNNNNNNNTGG 1 cut(s) 739
XspI CTAG 2 cut(s) 575, 584
ZrmI AGTACT 1 cut(s) 383
Zsp2I ATGCAT 2 cut(s) 296, 558
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.