Rroxscaffold_2G00133290

Alcohol dehydrogenase GroES-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000167
Physical Location & Seq
Reverse (-)
70392164 .. 70402493
10330 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00133290.1

Sequence Viewer

Length: 858 bp
ATGGGGTTGCAGCTCGCTACAGAAAACCTGCAGCTGTTGCATGTCGGGTTGCTGCCCGAACCTGCAACCCCGACCTCCTCCCACCTCGAACGCTGCCCAGATCAAGAAATGGTGGCATCTTCAGAGCACGAACACCCCCAAGAGGGCCCTTGGATGGGCTGTCAGAGACACATGCATCTGGTGTCCTCTCTCCTTTTAAGTTCTCAAGAAGCTGAACTTGAAGAGGCTAACAAGTCTATATCTTTGCCTTCAGAGACTGAATTTGTGACACATGATGATAGTTGCAGAAGCAATGGTGTGGGGAGCAAAGTCCAAAAGTTTAAAGTTGGAGACAAAGTTGGTGTTAGGTGCTTGGTAGGCTCATGCAAATCTTGCGACAACCGTGCTAACGATTTGGAAAATTACCGCCCTAAATCAATACAGACTTATCTGGCGCCAAGTACCTTGACGGAACCACCACATATGGTGGTTATTCTCGACATCATGGTAGCGAATGAGGACTTTGCTACCATGGGAACATTGGATGGTATCATCGACACGCTTCTGCAGCTCACCCTCTCCCACCTCTCGATTAGTTTATTGAAGGTTAATGGAAAGCTTGTGATGGTTGGAGCGCCGAGAAGCCTCTTGAGCTCCCAGTTTTTCCTTGCTAATGGGAAGATTTTAGCCGGTAGTAATATCGGAGGTATCAAGGAGACACAAGAGATGATAGATTTGGCAGCCAAACACAACATAACGGCCGACATCGAAGTTATCCCCATCGATTATTTGAACACCGCCATGGAGCGTCTTGCCAAAGGAGATGTTAGATACCGGTTTGTCATCGATATCGGAAACACATTAAAGTCGGCCACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
ADH_N ADH_zinc_N

Protein Analysis

285

Amino Acids

31.09

Weight (kDa)

5.35

Isoelectric Point (pI)

40.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000167)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G37980 AT4G37980 AT4G37990
fragaria_vesca FvH4_1g19210 FvH4_1g19220 FvH4_1g19240 FvH4_1g19240 FvH4_1g19261 FvH4_1g19262 FvH4_1g19263 FvH4_1g19263 FvH4_1g19265 FvH4_1g19281 FvH4_1g19281 FvH4_7g07240 FvH4_7g07240 FvH4_7g07240
malus_domestica MD01G1042500.v1.1 MD01G1042600.v1.1 MD01G1042800.v1.1 MD01G1042900.v1.1 MD05G1034100.v1.1 MD10G1035900.v1.1 MD10G1036000.v1.1 MD10G1155000.v1.1 MD10G1155100.v1.1 MD10G1155200.v1.1 MD10G1155400.v1.1 MD10G1155700.v1.1 MD10G1155800.v1.1 MD15G1308800.v1.1 MD15G1308900.v1.1
prunus_persica Prupe.6G205600_v2.0.a1 Prupe.6G205700_v2.0.a1 Prupe.6G205800_v2.0.a1 Prupe.6G205900_v2.0.a1 Prupe.6G206300_v2.0.a1 Prupe.6G206800_v2.0.a1 Prupe.6G207100_v2.0.a1 Prupe.6G207200_v2.0.a1 Prupe.6G207300_v2.0.a1 Prupe.6G207400_v2.0.a1 Prupe.6G207500_v2.0.a1 Prupe.6G207600_v2.0.a1 Prupe.6G207700_v2.0.a1 Prupe.6G207900_v2.0.a1
pyrus_communis pycom01g06970 pycom01g06980 pycom01g06990 pycom05g02460 pycom08g00750 pycom10g13410 pycom15g27310 pycom15g27320
rosa_chinensis RchiOBHm_Chr1g0314861 RchiOBHm_Chr1g0345441 RchiOBHm_Chr1g0345451 RchiOBHm_Chr1g0345621 RchiOBHm_Chr1g0345751 RchiOBHm_Chr1g0345861 RchiOBHm_Chr1g0345871 RchiOBHm_Chr1g0345891 RchiOBHm_Chr2g0094851 RchiOBHm_Chr2g0110471 RchiOBHm_Chr2g0110511 RchiOBHm_Chr2g0110531 RchiOBHm_Chr2g0110541 RchiOBHm_Chr2g0110571 RchiOBHm_Chr5g0039381 RchiOBHm_Chr5g0039391 RchiOBHm_Chr6g0270311 RchiOBHm_Chr6g0270331 RchiOBHm_Chr6g0270411 RchiOBHm_Chr6g0270431
rosa_laevigata RLG00000000515 RLG00000013793 RLG00000013797 RLG00000013799 RLG00000016525 RLG00000017808 RLG00000017811 RLG00000017813 RLG00000017816 RLG00000017819 RLG00000017822 RLG00000017824 RLG00000017825 RLG00000028835
rosa_multiflora Rmu_co8225458.1_g000001 Rmu_sc0000389.1_g000006 Rmu_sc0000389.1_g000014 Rmu_sc0000389.1_g000023 Rmu_sc0001292.1_g000012 Rmu_sc0001292.1_g000026 Rmu_sc0002145.1_g000003 Rmu_sc0002329.1_g000033 Rmu_sc0002833.1_g000044 Rmu_sc0004316.1_g000012 Rmu_sc0004439.1_g000003 Rmu_sc0006422.1_g000028 Rmu_sc0009479.1_g000012 Rmu_sc0010489.1_g000009 Rmu_sc0010489.1_g000010 Rmu_sc0017837.1_g000003 Rmu_sc0032320.1_g000001
rosa_roxburghii Rroxscaffold_1G00050770 Rroxscaffold_2G00133110 Rroxscaffold_2G00133140 Rroxscaffold_2G00133200 Rroxscaffold_2G00133270 Rroxscaffold_2G00133290 Rroxscaffold_2G00133300 Rroxscaffold_2G00133350 Rroxscaffold_4G00292490 Rroxscaffold_4G00309020 Rroxscaffold_4G00331740 Rroxscaffold_4G00331800 Rroxscaffold_6G00404470 Rroxscaffold_7G00197950 Rroxscaffold_7G00197990 Rroxscaffold_7G00198020
rosa_rugosa Rorug01G0002500 Rorug02G0047200 Rorug02G0047300 Rorug02G0047300 Rorug02G0047400 Rorug02G0168000 Rorug02G0168000 Rorug02G0168100 Rorug02G0168100 Rorug02G0168400.1 Rorug03G0157600 Rorug03G0157700 Rorug05G0112600 Rorug06G0054600 Rorug06G0054700
rosa_samantha Rh1AG013300 Rh1AG195600 Rh1AG195700 Rh1AG196000 Rh1BG004900 Rh1BG114300 Rh2AG132300 Rh2BG095500 Rh2BG229700 Rh2BG229800 Rh2CG097400 Rh2CG221500 Rh2CG221800 Rh2CG222100 Rh2CG222200 Rh2CG222500 Rh2CG222600 Rh2CG345000 Rh5BG269700 Rh6AG172900 Rh6AG173100 Rh6CG080500 Rh6DG075900 Rh6DG164700 Rh6DG164900 Rh6DG165200 Rh6DG165300
rosa_wichuraiana Rw0G015390 Rw1G000600 Rw1G016130 Rw1G016190 Rw2G007140 Rw2G016970 Rw2G016990 Rw2G017000 Rw3G018910 Rw3G018920 Rw3G018930 Rw5G024830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 36, 70
AccB1I GGYRCC 1 cut(s) 433
AciI CCGC 2 cut(s) 406, 777
AcoI YGGCCR 2 cut(s) 738, 849
AcsI RAATTY 1 cut(s) 260
AcuI CTGAAG 2 cut(s) 105, 234
AcyI GRCGYC 1 cut(s) 434
AfaI GTAC 1 cut(s) 442
AfiI CCNNNNNNNGG 4 cut(s) 142, 143, 154, 155
AgeI ACCGGT 1 cut(s) 813
AgsI TTSAA 3 cut(s) 221, 583, 772
AluBI AGCT 6 cut(s) 13, 34, 212, 550, 598, 633
AluI AGCT 6 cut(s) 13, 34, 212, 550, 598, 633
Alw21I GWGCWC 2 cut(s) 129, 635
Alw26I GTCTC 4 cut(s) 160, 248, 324, 689
AlwNI CAGNNNCTG 1 cut(s) 257
AoxI GGCC 3 cut(s) 145, 738, 849
ApaI GGGCCC 1 cut(s) 149
ApeKI GCWGC 6 cut(s) 10, 31, 52, 93, 547, 719
ApoI RAATTY 1 cut(s) 260
AsiGI ACCGGT 1 cut(s) 813
AspLEI GCGC 2 cut(s) 436, 616
AspS9I GGNCC 2 cut(s) 145, 146
AsuHPI GGTGA 1 cut(s) 544
BaeGI GKGCMC 1 cut(s) 149
BanI GGYRCC 1 cut(s) 433
BanII GRGCYC 2 cut(s) 149, 635
Bbv12I GWGCWC 2 cut(s) 129, 635
BbvI GCAGC 6 cut(s) 22, 39, 43, 80, 559, 731
BccI CCATC 4 cut(s) 148, 518, 598, 767
BceAI ACGGC 1 cut(s) 753
BcgI CGANNNNNNTGC 2 cut(s) 365, 399
BcoDI GTCTC 4 cut(s) 160, 248, 324, 689
BfmI CTRYAG 3 cut(s) 18, 29, 545
BfoI RGCGCY 2 cut(s) 437, 617
BfuAI ACCTGC 2 cut(s) 36, 70
BisI GCNGC 6 cut(s) 11, 32, 53, 94, 548, 720
BlsI GCNGC 6 cut(s) 12, 33, 54, 95, 549, 721
BmgT120I GGNCC 2 cut(s) 145, 146
BmiI GGNNCC 3 cut(s) 147, 435, 453
BmrI ACTGGG 1 cut(s) 631
BmsI GCATC 2 cut(s) 125, 184
BmuI ACTGGG 1 cut(s) 631
BpuEI CTTGAG 2 cut(s) 189, 649
Bsa29I ATCGAT 2 cut(s) 762, 825
BsaHI GRCGYC 1 cut(s) 434
BsaJI CCNNGG 3 cut(s) 149, 510, 780
BsaWI WCCGGW 1 cut(s) 813
BsaXI ACNNNNNCTCC 2 cut(s) 321, 351
Bsc4I CCNNNNNNNGG 4 cut(s) 142, 143, 154, 155
Bse118I RCCGGY 2 cut(s) 668, 813
Bse1I ACTGG 1 cut(s) 637
Bse3DI GCAATG 1 cut(s) 298
BseCI ATCGAT 2 cut(s) 762, 825
BseDI CCNNGG 3 cut(s) 149, 510, 780
BseGI GGATG 2 cut(s) 159, 529
BseLI CCNNNNNNNGG 4 cut(s) 142, 143, 154, 155
BseMI GCAATG 1 cut(s) 298
BseNI ACTGG 1 cut(s) 637
BseRI GAGGAG 1 cut(s) 67
BseSI GKGCMC 1 cut(s) 149
BseX3I CGGCCG 1 cut(s) 738
BseXI GCAGC 6 cut(s) 22, 39, 43, 80, 559, 731
Bsh1285I CGRYCG 1 cut(s) 741
BshFI GGCC 3 cut(s) 147, 740, 851
BshNI GGYRCC 1 cut(s) 433
BshTI ACCGGT 1 cut(s) 813
BshVI ATCGAT 2 cut(s) 762, 825
BsiEI CGRYCG 1 cut(s) 741
BsiHKAI GWGCWC 2 cut(s) 129, 635
BsiSI CCGG 2 cut(s) 669, 814
BslI CCNNNNNNNGG 4 cut(s) 142, 143, 154, 155
BsmAI GTCTC 4 cut(s) 160, 248, 324, 689
BsnI GGCC 3 cut(s) 147, 740, 851
Bsp120I GGGCCC 1 cut(s) 145
Bsp1286I GDGCHC 3 cut(s) 129, 149, 635
Bsp143I GATC 1 cut(s) 100
Bsp19I CCATGG 2 cut(s) 510, 780
BspACI CCGC 2 cut(s) 406, 777
BspANI GGCC 3 cut(s) 147, 740, 851
BspDI ATCGAT 2 cut(s) 762, 825
BspLI GGNNCC 3 cut(s) 147, 435, 453
BspMAI CTGCAG 2 cut(s) 33, 549
BspMI ACCTGC 2 cut(s) 36, 70
BspT107I GGYRCC 1 cut(s) 433
BsrDI GCAATG 1 cut(s) 298
BsrFI RCCGGY 2 cut(s) 668, 813
BsrI ACTGG 1 cut(s) 637
BssAI RCCGGY 2 cut(s) 668, 813
BssECI CCNNGG 3 cut(s) 149, 510, 780
BssMI GATC 1 cut(s) 100
BssNI GRCGYC 1 cut(s) 434
BssT1I CCWWGG 3 cut(s) 149, 510, 780
Bst4CI ACNGT 1 cut(s) 383
Bst6I CTCTTC 1 cut(s) 216
BstACI GRCGYC 1 cut(s) 434
BstAPI GCANNNNNTGC 2 cut(s) 37, 372
BstC8I GCNNGC 1 cut(s) 15
BstDSI CCRYGG 2 cut(s) 510, 780
BstF5I GGATG 2 cut(s) 159, 529
BstH2I RGCGCY 2 cut(s) 437, 617
BstHHI GCGC 2 cut(s) 436, 616
BstKTI GATC 1 cut(s) 103
BstMAI GTCTC 4 cut(s) 160, 248, 324, 689
BstMBI GATC 1 cut(s) 100
BstMCI CGRYCG 1 cut(s) 741
BstMWI GCNNNNNNNGC 5 cut(s) 37, 357, 372, 547, 630
BstNSI RCATGY 2 cut(s) 44, 175
BstSFI CTRYAG 3 cut(s) 18, 29, 545
BstSLI GKGCMC 1 cut(s) 149
BstV1I GCAGC 6 cut(s) 22, 39, 43, 80, 559, 731
BstZI CGGCCG 1 cut(s) 738
Bsu15I ATCGAT 2 cut(s) 762, 825
BsuRI GGCC 3 cut(s) 147, 740, 851
BsuTUI ATCGAT 2 cut(s) 762, 825
BtgI CCRYGG 2 cut(s) 510, 780
BtsCI GGATG 2 cut(s) 159, 529
BveI ACCTGC 2 cut(s) 36, 70
Cac8I GCNNGC 1 cut(s) 15
CaiI CAGNNNCTG 1 cut(s) 257
CfoI GCGC 2 cut(s) 436, 616
Cfr10I RCCGGY 2 cut(s) 668, 813
Cfr13I GGNCC 2 cut(s) 145, 146
ClaI ATCGAT 2 cut(s) 762, 825
CseI GACGC 1 cut(s) 776
Csp6I GTAC 1 cut(s) 441
CspAI ACCGGT 1 cut(s) 813
CviAII CATG 7 cut(s) 41, 172, 272, 363, 484, 511, 781
CviQI GTAC 1 cut(s) 441
DinI GGCGCC 1 cut(s) 435
DpnI GATC 1 cut(s) 102
DpnII GATC 1 cut(s) 100
DraI TTTAAA 1 cut(s) 322
EaeI YGGCCR 2 cut(s) 738, 849
EagI CGGCCG 1 cut(s) 738
Eam1104I CTCTTC 1 cut(s) 216
EarI CTCTTC 1 cut(s) 216
Ecl136II GAGCTC 1 cut(s) 633
EclXI CGGCCG 1 cut(s) 738
Eco130I CCWWGG 3 cut(s) 149, 510, 780
Eco24I GRGCYC 2 cut(s) 149, 635
Eco32I GATATC 1 cut(s) 829
Eco52I CGGCCG 1 cut(s) 738
Eco53kI GAGCTC 1 cut(s) 633
Eco57I CTGAAG 2 cut(s) 105, 234
EcoICRI GAGCTC 1 cut(s) 633
EcoO109I RGGNCCY 2 cut(s) 145, 146
EcoRV GATATC 1 cut(s) 829
EcoT14I CCWWGG 3 cut(s) 149, 510, 780
EcoT22I ATGCAT 1 cut(s) 177
EcoT38I GRGCYC 2 cut(s) 149, 635
EgeI GGCGCC 1 cut(s) 435
EheI GGCGCC 1 cut(s) 435
ErhI CCWWGG 3 cut(s) 149, 510, 780
FaeI CATG 7 cut(s) 44, 175, 275, 366, 487, 514, 784
FalI AAGNNNNNCTT 2 cut(s) 201, 233
FatI CATG 7 cut(s) 40, 171, 271, 362, 483, 510, 780
FauNDI CATATG 1 cut(s) 462
Fnu4HI GCNGC 6 cut(s) 11, 32, 53, 94, 548, 720
FokI GGATG 2 cut(s) 166, 536
FriOI GRGCYC 2 cut(s) 149, 635
Fsp4HI GCNGC 6 cut(s) 11, 32, 53, 94, 548, 720
GlaI GCGC 2 cut(s) 435, 615
GluI GCNGC 6 cut(s) 11, 32, 53, 94, 548, 720
HaeII RGCGCY 2 cut(s) 437, 617
HaeIII GGCC 3 cut(s) 147, 740, 851
HapII CCGG 2 cut(s) 669, 814
HgaI GACGC 1 cut(s) 776
HhaI GCGC 2 cut(s) 436, 616
Hin1I GRCGYC 1 cut(s) 434
Hin1II CATG 7 cut(s) 44, 175, 275, 366, 487, 514, 784
Hin6I GCGC 2 cut(s) 434, 614
HinP1I GCGC 2 cut(s) 434, 614
HindIII AAGCTT 1 cut(s) 596
HpaII CCGG 2 cut(s) 669, 814
HphI GGTGA 1 cut(s) 544
Hpy188I TCNGA 5 cut(s) 124, 165, 253, 683, 833
Hpy188III TCNNGA 5 cut(s) 104, 206, 476, 568, 628
HpyAV CCTTC 2 cut(s) 258, 577
HpyCH4III ACNGT 1 cut(s) 383
HpyCH4V TGCA 8 cut(s) 10, 31, 40, 65, 175, 285, 366, 547
HpyF10VI GCNNNNNNNGC 5 cut(s) 37, 357, 372, 547, 630
Hsp92I GRCGYC 1 cut(s) 434
Hsp92II CATG 7 cut(s) 44, 175, 275, 366, 487, 514, 784
HspAI GCGC 2 cut(s) 434, 614
KasI GGCGCC 1 cut(s) 433
Kzo9I GATC 1 cut(s) 100
LmnI GCTCC 4 cut(s) 303, 611, 638, 784
LpnPI CCDG 8 cut(s) 41, 75, 111, 164, 416, 650, 682, 827
Lsp1109I GCAGC 6 cut(s) 22, 39, 43, 80, 559, 731
LweI GCATC 2 cut(s) 125, 184
MaeIII GTNAC 1 cut(s) 265
MalI GATC 1 cut(s) 102
MboI GATC 1 cut(s) 100
MboII GAAGA 3 cut(s) 111, 233, 670
MhlI GDGCHC 3 cut(s) 129, 149, 635
MluCI AATT 2 cut(s) 260, 400
Mly113I GGCGCC 1 cut(s) 434
MmeI TCCRAC 2 cut(s) 307, 589
Mph1103I ATGCAT 1 cut(s) 177
MseI TTAA 5 cut(s) 197, 321, 588, 842, 856
MslI CAYNNNNRTG 1 cut(s) 779
MspA1I CMGCKG 1 cut(s) 34
MspI CCGG 2 cut(s) 669, 814
MwoI GCNNNNNNNGC 5 cut(s) 37, 357, 372, 547, 630
NarI GGCGCC 1 cut(s) 434
NcoI CCATGG 2 cut(s) 510, 780
NdeI CATATG 1 cut(s) 462
NdeII GATC 1 cut(s) 100
NlaIII CATG 7 cut(s) 44, 175, 275, 366, 487, 514, 784
NlaIV GGNNCC 3 cut(s) 147, 435, 453
NmeAIII GCCGAG 1 cut(s) 642
NmuCI GTSAC 1 cut(s) 265
NsiI ATGCAT 1 cut(s) 177
NspI RCATGY 2 cut(s) 44, 175
PinAI ACCGGT 1 cut(s) 813
PkrI GCNGC 6 cut(s) 12, 33, 54, 95, 549, 721
PluTI GGCGCC 1 cut(s) 437
Psp124BI GAGCTC 1 cut(s) 635
PspN4I GGNNCC 3 cut(s) 147, 435, 453
PspOMI GGGCCC 1 cut(s) 145
PspPI GGNCC 2 cut(s) 145, 146
PstI CTGCAG 2 cut(s) 33, 549
PstNI CAGNNNCTG 1 cut(s) 257
PvuII CAGCTG 1 cut(s) 34
RsaI GTAC 1 cut(s) 442
RsaNI GTAC 1 cut(s) 441
RseI CAYNNNNRTG 1 cut(s) 779
SacI GAGCTC 1 cut(s) 635
SaqAI TTAA 5 cut(s) 197, 321, 588, 842, 856
SatI GCNGC 6 cut(s) 11, 32, 53, 94, 548, 720
Sau3AI GATC 1 cut(s) 100
Sau96I GGNCC 2 cut(s) 145, 146
SduI GDGCHC 3 cut(s) 129, 149, 635
SfaNI GCATC 2 cut(s) 125, 184
SfcI CTRYAG 3 cut(s) 18, 29, 545
SfoI GGCGCC 1 cut(s) 435
SmiMI CAYNNNNRTG 1 cut(s) 779
SmlI CTYRAG 2 cut(s) 204, 628
SmoI CTYRAG 2 cut(s) 204, 628
Sse9I AATT 2 cut(s) 260, 400
SsiI CCGC 2 cut(s) 406, 777
SspDI GGCGCC 1 cut(s) 433
SstI GAGCTC 1 cut(s) 635
StyI CCWWGG 3 cut(s) 149, 510, 780
TaaI ACNGT 1 cut(s) 383
TaqI TCGA 7 cut(s) 87, 477, 534, 569, 747, 762, 825
TasI AATT 2 cut(s) 260, 400
Tru1I TTAA 5 cut(s) 197, 321, 588, 842, 856
Tru9I TTAA 5 cut(s) 197, 321, 588, 842, 856
TseFI GTSAC 1 cut(s) 265
TseI GCWGC 6 cut(s) 10, 31, 52, 93, 547, 719
Tsp45I GTSAC 1 cut(s) 265
TspGWI ACGGA 1 cut(s) 464
XapI RAATTY 1 cut(s) 260
XceI RCATGY 2 cut(s) 44, 175
XcmI CCANNNNNNNNNTGG 1 cut(s) 517
Zsp2I ATGCAT 1 cut(s) 177
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.