Rmu_sc0001292.1_g000012

Dehydrogenase

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001292.1
Physical Location & Seq
Reverse (-)
55782 .. 60984
5203 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001292.1_g000012.1.cds

Sequence Viewer

Length: 513 bp
atgtctaacgagcaagaacaccccaggaaggcagttggatgggctgcaagagattcatctggtgttctctctcccttcagtttctcaagaagggaatccggagagaaagacgtgacattcaaagtgttgtattgtgggatttgccattcggaccttcacatggtcaagaatgaatggggcttctctacctatcctctggttcccgggcatgagattgtcggtgaagtaacggaagtagggagcaatgtacaaaaattcaaagttggagacaaagtcggtgttggatgcatagttggagcttgccgatcttgtgatagttgtaccgaccatcttgagaactactgccccaaacaaatactcacgatcagtggcaagtactatgacggaaccacaaactatggcggttactctgacattatggttgccgatgaacacttcgtagtccgtatcccggacagcctaccccttgatgtcattagaggtgatgcaaaggaactctgtccattctcataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

170

Amino Acids

18.72

Weight (kDa)

5.46

Isoelectric Point (pI)

37.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000167)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G37980 AT4G37980 AT4G37990
fragaria_vesca FvH4_1g19210 FvH4_1g19220 FvH4_1g19240 FvH4_1g19240 FvH4_1g19261 FvH4_1g19262 FvH4_1g19263 FvH4_1g19263 FvH4_1g19265 FvH4_1g19281 FvH4_1g19281 FvH4_7g07240 FvH4_7g07240 FvH4_7g07240
malus_domestica MD01G1042500.v1.1 MD01G1042600.v1.1 MD01G1042800.v1.1 MD01G1042900.v1.1 MD05G1034100.v1.1 MD10G1035900.v1.1 MD10G1036000.v1.1 MD10G1155000.v1.1 MD10G1155100.v1.1 MD10G1155200.v1.1 MD10G1155400.v1.1 MD10G1155700.v1.1 MD10G1155800.v1.1 MD15G1308800.v1.1 MD15G1308900.v1.1
prunus_persica Prupe.6G205600_v2.0.a1 Prupe.6G205700_v2.0.a1 Prupe.6G205800_v2.0.a1 Prupe.6G205900_v2.0.a1 Prupe.6G206300_v2.0.a1 Prupe.6G206800_v2.0.a1 Prupe.6G207100_v2.0.a1 Prupe.6G207200_v2.0.a1 Prupe.6G207300_v2.0.a1 Prupe.6G207400_v2.0.a1 Prupe.6G207500_v2.0.a1 Prupe.6G207600_v2.0.a1 Prupe.6G207700_v2.0.a1 Prupe.6G207900_v2.0.a1
pyrus_communis pycom01g06970 pycom01g06980 pycom01g06990 pycom05g02460 pycom08g00750 pycom10g13410 pycom15g27310 pycom15g27320
rosa_chinensis RchiOBHm_Chr1g0314861 RchiOBHm_Chr1g0345441 RchiOBHm_Chr1g0345451 RchiOBHm_Chr1g0345621 RchiOBHm_Chr1g0345751 RchiOBHm_Chr1g0345861 RchiOBHm_Chr1g0345871 RchiOBHm_Chr1g0345891 RchiOBHm_Chr2g0094851 RchiOBHm_Chr2g0110471 RchiOBHm_Chr2g0110511 RchiOBHm_Chr2g0110531 RchiOBHm_Chr2g0110541 RchiOBHm_Chr2g0110571 RchiOBHm_Chr5g0039381 RchiOBHm_Chr5g0039391 RchiOBHm_Chr6g0270311 RchiOBHm_Chr6g0270331 RchiOBHm_Chr6g0270411 RchiOBHm_Chr6g0270431
rosa_laevigata RLG00000000515 RLG00000013793 RLG00000013797 RLG00000013799 RLG00000016525 RLG00000017808 RLG00000017811 RLG00000017813 RLG00000017816 RLG00000017819 RLG00000017822 RLG00000017824 RLG00000017825 RLG00000028835
rosa_multiflora Rmu_co8225458.1_g000001 Rmu_sc0000389.1_g000006 Rmu_sc0000389.1_g000014 Rmu_sc0000389.1_g000023 Rmu_sc0001292.1_g000012 Rmu_sc0001292.1_g000026 Rmu_sc0002145.1_g000003 Rmu_sc0002329.1_g000033 Rmu_sc0002833.1_g000044 Rmu_sc0004316.1_g000012 Rmu_sc0004439.1_g000003 Rmu_sc0006422.1_g000028 Rmu_sc0009479.1_g000012 Rmu_sc0010489.1_g000009 Rmu_sc0010489.1_g000010 Rmu_sc0017837.1_g000003 Rmu_sc0032320.1_g000001
rosa_roxburghii Rroxscaffold_1G00050770 Rroxscaffold_2G00133110 Rroxscaffold_2G00133140 Rroxscaffold_2G00133200 Rroxscaffold_2G00133270 Rroxscaffold_2G00133290 Rroxscaffold_2G00133300 Rroxscaffold_2G00133350 Rroxscaffold_4G00292490 Rroxscaffold_4G00309020 Rroxscaffold_4G00331740 Rroxscaffold_4G00331800 Rroxscaffold_6G00404470 Rroxscaffold_7G00197950 Rroxscaffold_7G00197990 Rroxscaffold_7G00198020
rosa_rugosa Rorug01G0002500 Rorug02G0047200 Rorug02G0047300 Rorug02G0047300 Rorug02G0047400 Rorug02G0168000 Rorug02G0168000 Rorug02G0168100 Rorug02G0168100 Rorug02G0168400.1 Rorug03G0157600 Rorug03G0157700 Rorug05G0112600 Rorug06G0054600 Rorug06G0054700
rosa_samantha Rh1AG013300 Rh1AG195600 Rh1AG195700 Rh1AG196000 Rh1BG004900 Rh1BG114300 Rh2AG132300 Rh2BG095500 Rh2BG229700 Rh2BG229800 Rh2CG097400 Rh2CG221500 Rh2CG221800 Rh2CG222100 Rh2CG222200 Rh2CG222500 Rh2CG222600 Rh2CG345000 Rh5BG269700 Rh6AG172900 Rh6AG173100 Rh6CG080500 Rh6DG075900 Rh6DG164700 Rh6DG164900 Rh6DG165200 Rh6DG165300
rosa_wichuraiana Rw0G015390 Rw1G000600 Rw1G016130 Rw1G016190 Rw2G007140 Rw2G016970 Rw2G016990 Rw2G017000 Rw3G018910 Rw3G018920 Rw3G018930 Rw5G024830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 98
AciI CCGC 1 cut(s) 402
AcsI RAATTY 1 cut(s) 254
AcuI CTGAAG 1 cut(s) 61
AfaI GTAC 3 cut(s) 249, 322, 377
AfiI CCNNNNNNNGG 3 cut(s) 28, 160, 451
AgsI TTSAA 2 cut(s) 121, 259
AjiI CACGTC 1 cut(s) 112
AjnI CCWGG 1 cut(s) 23
AluBI AGCT 1 cut(s) 299
AluI AGCT 1 cut(s) 299
Alw26I GTCTC 1 cut(s) 261
Ama87I CYCGRG 1 cut(s) 203
Aor13HI TCCGGA 1 cut(s) 98
ApeKI GCWGC 1 cut(s) 44
ApoI RAATTY 1 cut(s) 254
AspS9I GGNCC 1 cut(s) 151
AsuC2I CCSGG 3 cut(s) 204, 205, 452
AsuHPI GGTGA 2 cut(s) 233, 494
AvaI CYCGRG 1 cut(s) 203
AvaII GGWCC 1 cut(s) 151
BbvI GCAGC 1 cut(s) 31
BccI CCATC 2 cut(s) 33, 336
BciT130I CCWGG 1 cut(s) 25
BciVI GTATCC 1 cut(s) 458
BcnI CCSGG 3 cut(s) 204, 205, 452
BcoDI GTCTC 1 cut(s) 261
BfuI GTATCC 1 cut(s) 458
BisI GCNGC 1 cut(s) 45
BlsI GCNGC 1 cut(s) 46
BmcAI AGTACT 1 cut(s) 377
Bme1390I CCNGG 4 cut(s) 25, 204, 205, 452
Bme18I GGWCC 1 cut(s) 151
BmeT110I CYCGRG 1 cut(s) 203
BmgBI CACGTC 1 cut(s) 112
BmgT120I GGNCC 1 cut(s) 151
BmiI GGNNCC 2 cut(s) 201, 388
BmrFI CCNGG 4 cut(s) 25, 204, 205, 452
BmsI GCATC 2 cut(s) 275, 475
BpuEI CTTGAG 2 cut(s) 70, 353
BpuMI CCSGG 3 cut(s) 204, 205, 452
BsaJI CCNNGG 2 cut(s) 23, 203
BsaWI WCCGGW 1 cut(s) 98
BsaXI ACNNNNNCTCC 2 cut(s) 258, 288
Bsc4I CCNNNNNNNGG 3 cut(s) 28, 160, 451
Bse3DI GCAATG 1 cut(s) 250
BseAI TCCGGA 1 cut(s) 98
BseBI CCWGG 1 cut(s) 25
BseDI CCNNGG 2 cut(s) 23, 203
BseGI GGATG 2 cut(s) 44, 290
BseLI CCNNNNNNNGG 3 cut(s) 28, 160, 451
BseMI GCAATG 1 cut(s) 250
BseXI GCAGC 1 cut(s) 31
BsiHKCI CYCGRG 1 cut(s) 203
BsiSI CCGG 3 cut(s) 99, 204, 452
BslI CCNNNNNNNGG 3 cut(s) 28, 160, 451
BsmAI GTCTC 1 cut(s) 261
BsoBI CYCGRG 1 cut(s) 203
Bsp13I TCCGGA 1 cut(s) 98
Bsp1407I TGTACA 1 cut(s) 247
Bsp143I GATC 2 cut(s) 305, 363
BspACI CCGC 1 cut(s) 402
BspEI TCCGGA 1 cut(s) 98
BspLI GGNNCC 2 cut(s) 201, 388
BsrDI GCAATG 1 cut(s) 250
BsrGI TGTACA 1 cut(s) 247
BssECI CCNNGG 2 cut(s) 23, 203
BssMI GATC 2 cut(s) 305, 363
Bst2UI CCWGG 1 cut(s) 25
BstAUI TGTACA 1 cut(s) 247
BstC8I GCNNGC 1 cut(s) 301
BstF5I GGATG 2 cut(s) 44, 290
BstKTI GATC 2 cut(s) 308, 366
BstMAI GTCTC 1 cut(s) 261
BstMBI GATC 2 cut(s) 305, 363
BstNI CCWGG 1 cut(s) 25
BstSCI CCNGG 4 cut(s) 23, 202, 203, 450
BstV1I GCAGC 1 cut(s) 31
BsuI GTATCC 1 cut(s) 458
BtrI CACGTC 1 cut(s) 112
BtsCI GGATG 2 cut(s) 44, 290
BtsIMutI CAGTG 1 cut(s) 373
Cac8I GCNNGC 1 cut(s) 301
Cfr13I GGNCC 1 cut(s) 151
Cfr9I CCCGGG 1 cut(s) 203
Csp6I GTAC 3 cut(s) 248, 321, 376
CviAII CATG 2 cut(s) 160, 209
CviJI RGCY 4 cut(s) 44, 180, 299, 459
CviKI_1 RGCY 4 cut(s) 44, 180, 299, 459
CviQI GTAC 3 cut(s) 248, 321, 376
DpnI GATC 2 cut(s) 307, 365
DpnII GATC 2 cut(s) 305, 363
Eco47I GGWCC 1 cut(s) 151
Eco57I CTGAAG 1 cut(s) 61
Eco88I CYCGRG 1 cut(s) 203
EcoRII CCWGG 1 cut(s) 23
EcoT22I ATGCAT 1 cut(s) 290
FaeI CATG 2 cut(s) 163, 212
FaiI YATR 7 cut(s) 161, 210, 290, 381, 399, 419, 511
FatI CATG 2 cut(s) 159, 208
Fnu4HI GCNGC 1 cut(s) 45
FokI GGATG 2 cut(s) 51, 297
Fsp4HI GCNGC 1 cut(s) 45
GluI GCNGC 1 cut(s) 45
HapII CCGG 3 cut(s) 99, 204, 452
Hin1II CATG 2 cut(s) 163, 212
HinfI GANTC 2 cut(s) 53, 95
HpaII CCGG 3 cut(s) 99, 204, 452
HphI GGTGA 2 cut(s) 233, 494
Hpy188I TCNGA 2 cut(s) 151, 412
Hpy188III TCNNGA 5 cut(s) 87, 99, 166, 332, 361
HpyAV CCTTC 4 cut(s) 22, 84, 85, 164
HpyCH4IV ACGT 1 cut(s) 111
HpyCH4V TGCA 3 cut(s) 47, 288, 488
HpySE526I ACGT 1 cut(s) 111
Hsp92II CATG 2 cut(s) 163, 212
Kpn2I TCCGGA 1 cut(s) 98
Kzo9I GATC 2 cut(s) 305, 363
LmnI GCTCC 2 cut(s) 240, 296
LpnPI CCDG 7 cut(s) 10, 37, 45, 112, 182, 217, 465
Lsp1109I GCAGC 1 cut(s) 31
LweI GCATC 2 cut(s) 275, 475
MaeII ACGT 1 cut(s) 111
MaeIII GTNAC 3 cut(s) 112, 226, 404
MalI GATC 2 cut(s) 307, 365
MboI GATC 2 cut(s) 305, 363
MluCI AATT 1 cut(s) 254
MmeI TCCRAC 4 cut(s) 16, 244, 262, 274
MnlI CCTC 2 cut(s) 204, 473
Mph1103I ATGCAT 1 cut(s) 290
MroI TCCGGA 1 cut(s) 98
MspI CCGG 3 cut(s) 99, 204, 452
MspR9I CCNGG 4 cut(s) 25, 204, 205, 452
MvaI CCWGG 1 cut(s) 25
NciI CCSGG 3 cut(s) 204, 205, 452
NdeII GATC 2 cut(s) 305, 363
NlaIII CATG 2 cut(s) 163, 212
NlaIV GGNNCC 2 cut(s) 201, 388
NmuCI GTSAC 1 cut(s) 112
NsiI ATGCAT 1 cut(s) 290
PfeI GAWTC 2 cut(s) 53, 95
PflFI GACNNNGTC 1 cut(s) 272
PfoI TCCNGGA 1 cut(s) 450
PkrI GCNGC 1 cut(s) 46
Psp6I CCWGG 1 cut(s) 23
PspGI CCWGG 1 cut(s) 23
PspN4I GGNNCC 2 cut(s) 201, 388
PspPI GGNCC 1 cut(s) 151
PsyI GACNNNGTC 1 cut(s) 272
RsaI GTAC 3 cut(s) 249, 322, 377
RsaNI GTAC 3 cut(s) 248, 321, 376
SatI GCNGC 1 cut(s) 45
Sau3AI GATC 2 cut(s) 305, 363
Sau96I GGNCC 1 cut(s) 151
ScaI AGTACT 1 cut(s) 377
ScrFI CCNGG 4 cut(s) 25, 204, 205, 452
SetI ASST 5 cut(s) 114, 156, 191, 301, 484
SfaNI GCATC 2 cut(s) 275, 475
SinI GGWCC 1 cut(s) 151
SmaI CCCGGG 1 cut(s) 205
SmlI CTYRAG 2 cut(s) 85, 332
SmoI CTYRAG 2 cut(s) 85, 332
Sse9I AATT 1 cut(s) 254
SsiI CCGC 1 cut(s) 402
StyD4I CCNGG 4 cut(s) 23, 202, 203, 450
TaiI ACGT 1 cut(s) 114
TasI AATT 1 cut(s) 254
TatI WGTACW 2 cut(s) 247, 375
TfiI GAWTC 2 cut(s) 53, 95
TscAI CASTG 1 cut(s) 373
TseFI GTSAC 1 cut(s) 112
TseI GCWGC 1 cut(s) 44
Tsp45I GTSAC 1 cut(s) 112
TspDTI ATGAA 3 cut(s) 45, 186, 444
TspGWI ACGGA 3 cut(s) 245, 399, 434
TspMI CCCGGG 1 cut(s) 203
TspRI CASTG 1 cut(s) 373
Tth111I GACNNNGTC 1 cut(s) 272
VpaK11BI GGWCC 1 cut(s) 151
XapI RAATTY 1 cut(s) 254
XmaI CCCGGG 1 cut(s) 203
ZrmI AGTACT 1 cut(s) 377
Zsp2I ATGCAT 1 cut(s) 290
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.