Rw3G018910

Alcohol dehydrogenase GroES-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0000167
Physical Location & Seq
Reverse (-)
21264462 .. 21264840
379 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G018910.1

Sequence Viewer

Length: 255 bp
ATGGATGGTATCCTCGAGACAGTTCCTGCAGTTCACCCTCTAGAGCCTTTAATTAATTTGTTGAAGACTAATGGAAAGGTTGTTAGGGTTGGAATAGTGGCGCAGCCACTCGATCTTCCAGTTTTTCCATTGCTCCTCGGAAGGAAAATGGTAGCTGGTAGTGCCATTGGAGGTATGAAGGAAATGCAAGAGATGATTGATTTTGCTGCTGAACATAACATAACAGCTGACATTGTGCTTATTCCGATAGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
ADH_N ADH_zinc_N

Protein Analysis

84

Amino Acids

9.01

Weight (kDa)

4.92

Isoelectric Point (pI)

27.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ADH_zinc_N PF00107 2 - 70 9.3e-10 Zinc-binding dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000167)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G37980 AT4G37980 AT4G37990
fragaria_vesca FvH4_1g19210 FvH4_1g19220 FvH4_1g19240 FvH4_1g19240 FvH4_1g19261 FvH4_1g19262 FvH4_1g19263 FvH4_1g19263 FvH4_1g19265 FvH4_1g19281 FvH4_1g19281 FvH4_7g07240 FvH4_7g07240 FvH4_7g07240
malus_domestica MD01G1042500.v1.1 MD01G1042600.v1.1 MD01G1042800.v1.1 MD01G1042900.v1.1 MD05G1034100.v1.1 MD10G1035900.v1.1 MD10G1036000.v1.1 MD10G1155000.v1.1 MD10G1155100.v1.1 MD10G1155200.v1.1 MD10G1155400.v1.1 MD10G1155700.v1.1 MD10G1155800.v1.1 MD15G1308800.v1.1 MD15G1308900.v1.1
prunus_persica Prupe.6G205600_v2.0.a1 Prupe.6G205700_v2.0.a1 Prupe.6G205800_v2.0.a1 Prupe.6G205900_v2.0.a1 Prupe.6G206300_v2.0.a1 Prupe.6G206800_v2.0.a1 Prupe.6G207100_v2.0.a1 Prupe.6G207200_v2.0.a1 Prupe.6G207300_v2.0.a1 Prupe.6G207400_v2.0.a1 Prupe.6G207500_v2.0.a1 Prupe.6G207600_v2.0.a1 Prupe.6G207700_v2.0.a1 Prupe.6G207900_v2.0.a1
pyrus_communis pycom01g06970 pycom01g06980 pycom01g06990 pycom05g02460 pycom08g00750 pycom10g13410 pycom15g27310 pycom15g27320
rosa_chinensis RchiOBHm_Chr1g0314861 RchiOBHm_Chr1g0345441 RchiOBHm_Chr1g0345451 RchiOBHm_Chr1g0345621 RchiOBHm_Chr1g0345751 RchiOBHm_Chr1g0345861 RchiOBHm_Chr1g0345871 RchiOBHm_Chr1g0345891 RchiOBHm_Chr2g0094851 RchiOBHm_Chr2g0110471 RchiOBHm_Chr2g0110511 RchiOBHm_Chr2g0110531 RchiOBHm_Chr2g0110541 RchiOBHm_Chr2g0110571 RchiOBHm_Chr5g0039381 RchiOBHm_Chr5g0039391 RchiOBHm_Chr6g0270311 RchiOBHm_Chr6g0270331 RchiOBHm_Chr6g0270411 RchiOBHm_Chr6g0270431
rosa_laevigata RLG00000000515 RLG00000013793 RLG00000013797 RLG00000013799 RLG00000016525 RLG00000017808 RLG00000017811 RLG00000017813 RLG00000017816 RLG00000017819 RLG00000017822 RLG00000017824 RLG00000017825 RLG00000028835
rosa_multiflora Rmu_co8225458.1_g000001 Rmu_sc0000389.1_g000006 Rmu_sc0000389.1_g000014 Rmu_sc0000389.1_g000023 Rmu_sc0001292.1_g000012 Rmu_sc0001292.1_g000026 Rmu_sc0002145.1_g000003 Rmu_sc0002329.1_g000033 Rmu_sc0002833.1_g000044 Rmu_sc0004316.1_g000012 Rmu_sc0004439.1_g000003 Rmu_sc0006422.1_g000028 Rmu_sc0009479.1_g000012 Rmu_sc0010489.1_g000009 Rmu_sc0010489.1_g000010 Rmu_sc0017837.1_g000003 Rmu_sc0032320.1_g000001
rosa_roxburghii Rroxscaffold_1G00050770 Rroxscaffold_2G00133110 Rroxscaffold_2G00133140 Rroxscaffold_2G00133200 Rroxscaffold_2G00133270 Rroxscaffold_2G00133290 Rroxscaffold_2G00133300 Rroxscaffold_2G00133350 Rroxscaffold_4G00292490 Rroxscaffold_4G00309020 Rroxscaffold_4G00331740 Rroxscaffold_4G00331800 Rroxscaffold_6G00404470 Rroxscaffold_7G00197950 Rroxscaffold_7G00197990 Rroxscaffold_7G00198020
rosa_rugosa Rorug01G0002500 Rorug02G0047200 Rorug02G0047300 Rorug02G0047300 Rorug02G0047400 Rorug02G0168000 Rorug02G0168000 Rorug02G0168100 Rorug02G0168100 Rorug02G0168400.1 Rorug03G0157600 Rorug03G0157700 Rorug05G0112600 Rorug06G0054600 Rorug06G0054700
rosa_samantha Rh1AG013300 Rh1AG195600 Rh1AG195700 Rh1AG196000 Rh1BG004900 Rh1BG114300 Rh2AG132300 Rh2BG095500 Rh2BG229700 Rh2BG229800 Rh2CG097400 Rh2CG221500 Rh2CG221800 Rh2CG222100 Rh2CG222200 Rh2CG222500 Rh2CG222600 Rh2CG345000 Rh5BG269700 Rh6AG172900 Rh6AG173100 Rh6CG080500 Rh6DG075900 Rh6DG164700 Rh6DG164900 Rh6DG165200 Rh6DG165300
rosa_wichuraiana Rw0G015390 Rw1G000600 Rw1G016130 Rw1G016190 Rw2G007140 Rw2G016970 Rw2G016990 Rw2G017000 Rw3G018910 Rw3G018920 Rw3G018930 Rw5G024830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AgsI TTSAA 1 cut(s) 64
AluBI AGCT 2 cut(s) 155, 227
AluI AGCT 2 cut(s) 155, 227
Alw26I GTCTC 1 cut(s) 11
AlwNI CAGNNNCTG 1 cut(s) 26
Ama87I CYCGRG 1 cut(s) 14
ApeKI GCWGC 2 cut(s) 103, 206
AseI ATTAAT 1 cut(s) 54
AspLEI GCGC 1 cut(s) 103
AsuHPI GGTGA 1 cut(s) 26
AvaI CYCGRG 1 cut(s) 14
BbsI GAAGAC 1 cut(s) 71
BbvI GCAGC 2 cut(s) 115, 193
BciVI GTATCC 1 cut(s) 20
BcoDI GTCTC 1 cut(s) 11
BfaI CTAG 1 cut(s) 41
BfmI CTRYAG 1 cut(s) 27
BfuI GTATCC 1 cut(s) 20
BisI GCNGC 2 cut(s) 104, 207
BlsI GCNGC 2 cut(s) 105, 208
BmeT110I CYCGRG 1 cut(s) 14
BpiI GAAGAC 1 cut(s) 71
BsaJI CCNNGG 1 cut(s) 136
Bse1I ACTGG 1 cut(s) 119
Bse3DI GCAATG 1 cut(s) 128
BseDI CCNNGG 1 cut(s) 136
BseGI GGATG 1 cut(s) 10
BseMI GCAATG 1 cut(s) 128
BseNI ACTGG 1 cut(s) 119
BseRI GAGGAG 1 cut(s) 125
BseXI GCAGC 2 cut(s) 115, 193
BsiHKCI CYCGRG 1 cut(s) 14
BsmAI GTCTC 1 cut(s) 11
BsoBI CYCGRG 1 cut(s) 14
Bsp143I GATC 1 cut(s) 112
BspMAI CTGCAG 1 cut(s) 31
BsrDI GCAATG 1 cut(s) 128
BsrI ACTGG 1 cut(s) 119
BssECI CCNNGG 1 cut(s) 136
BssMI GATC 1 cut(s) 112
Bst4CI ACNGT 1 cut(s) 22
BstF5I GGATG 1 cut(s) 10
BstHHI GCGC 1 cut(s) 103
BstKTI GATC 1 cut(s) 115
BstMAI GTCTC 1 cut(s) 11
BstMBI GATC 1 cut(s) 112
BstMWI GCNNNNNNNGC 1 cut(s) 161
BstSFI CTRYAG 1 cut(s) 27
BstV1I GCAGC 2 cut(s) 115, 193
BstV2I GAAGAC 1 cut(s) 71
BsuI GTATCC 1 cut(s) 20
BtsCI GGATG 1 cut(s) 10
CaiI CAGNNNCTG 1 cut(s) 26
CfoI GCGC 1 cut(s) 103
CviJI RGCY 4 cut(s) 46, 106, 155, 227
CviKI_1 RGCY 4 cut(s) 46, 106, 155, 227
DpnI GATC 1 cut(s) 114
DpnII GATC 1 cut(s) 112
Eco88I CYCGRG 1 cut(s) 14
FaiI YATR 3 cut(s) 176, 216, 221
Fnu4HI GCNGC 2 cut(s) 104, 207
FokI GGATG 1 cut(s) 17
Fsp4HI GCNGC 2 cut(s) 104, 207
FspBI CTAG 1 cut(s) 41
GlaI GCGC 1 cut(s) 102
GluI GCNGC 2 cut(s) 104, 207
HhaI GCGC 1 cut(s) 103
Hin6I GCGC 1 cut(s) 101
HinP1I GCGC 1 cut(s) 101
HphI GGTGA 1 cut(s) 26
Hpy166II GTNNAC 1 cut(s) 34
Hpy188I TCNGA 2 cut(s) 140, 246
Hpy188III TCNNGA 2 cut(s) 16, 41
Hpy8I GTNNAC 1 cut(s) 34
HpyAV CCTTC 2 cut(s) 135, 172
HpyCH4III ACNGT 1 cut(s) 22
HpyCH4V TGCA 2 cut(s) 29, 187
HpyF10VI GCNNNNNNNGC 1 cut(s) 161
HspAI GCGC 1 cut(s) 101
Kzo9I GATC 1 cut(s) 112
LmnI GCTCC 1 cut(s) 138
LpnPI CCDG 3 cut(s) 39, 132, 141
Lsp1109I GCAGC 2 cut(s) 115, 193
MaeI CTAG 1 cut(s) 41
MalI GATC 1 cut(s) 114
MboI GATC 1 cut(s) 112
MboII GAAGA 2 cut(s) 76, 107
MluCI AATT 2 cut(s) 51, 55
MmeI TCCRAC 1 cut(s) 70
MnlI CCTC 4 cut(s) 23, 48, 146, 164
MseI TTAA 3 cut(s) 50, 54, 253
MspA1I CMGCKG 1 cut(s) 227
MwoI GCNNNNNNNGC 1 cut(s) 161
NdeII GATC 1 cut(s) 112
PacI TTAATTAA 1 cut(s) 54
PaeR7I CTCGAG 1 cut(s) 14
PkrI GCNGC 2 cut(s) 105, 208
PshBI ATTAAT 1 cut(s) 54
PstI CTGCAG 1 cut(s) 31
PstNI CAGNNNCTG 1 cut(s) 26
PvuII CAGCTG 1 cut(s) 227
SaqAI TTAA 3 cut(s) 50, 54, 253
SatI GCNGC 2 cut(s) 104, 207
Sau3AI GATC 1 cut(s) 112
SetI ASST 4 cut(s) 81, 157, 175, 229
SfcI CTRYAG 1 cut(s) 27
Sfr274I CTCGAG 1 cut(s) 14
SgeI CNNG 9 cut(s) 26, 28, 38, 53, 122, 131, 149, 168, 200
SlaI CTCGAG 1 cut(s) 14
SmlI CTYRAG 1 cut(s) 14
SmoI CTYRAG 1 cut(s) 14
Sse9I AATT 2 cut(s) 51, 55
SspMI CTAG 1 cut(s) 41
TaaI ACNGT 1 cut(s) 22
TaqI TCGA 2 cut(s) 15, 111
TasI AATT 2 cut(s) 51, 55
Tru1I TTAA 3 cut(s) 50, 54, 253
Tru9I TTAA 3 cut(s) 50, 54, 253
TseI GCWGC 2 cut(s) 103, 206
TspDTI ATGAA 1 cut(s) 191
VspI ATTAAT 1 cut(s) 54
XbaI TCTAGA 1 cut(s) 40
XhoI CTCGAG 1 cut(s) 14
XspI CTAG 1 cut(s) 41
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.