Rorug02G0047200

Dehydrogenase

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
Physical Location & Seq
Forward (+)
3654344 .. 3656621
2278 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0047200.1

Sequence Viewer

Length: 642 bp
ATGATGCTCAGGGTCTGGAAATGGTACCAGAGCTGCCTCTCTCAGCATCCATTGAAGACCCAGGTCATCAGCTCCGGCGTCCTCTGGGGCGTCGGCGACATTGCTGCCCAGTACATTACTCACTCCACCACAAGAAACCGTCTTCAGCTCTCTCACGACAAAGCTGAAGATTTCAAGGTTAACTGGAAACGAGTAGCTATCACAAGTACATTTGGCTTTGCTTTTGTTGGACCCGTTGGCCATTTCTGGTACGAAAACTTGGACAAGTTCATAAAGTTGAAGCTTCACCTAAAACCTAATTCAGCCCGGTTTGTTGCTGCTAAAGTGGCAATGGATGGTCTTATCTTTGGCCCCCTTGATTTGTTGGTGTTCTTCACCTACATGGGATTTTCCACTGGCAAGAATGCTGATCAAGTGAAGGAAGATTTGAAGAGAGATTTCATACCAGCCCTTATATTGGAGGGTGGCGTGTGGCCAATTGTTCAAGTTGCAAATTTCAGATATGTTCCTGTGAGGTATCAGCTCCTCTATGTTAATATCTTCTGCCTGTTGGACAGTGCCTTTTTGTCATGGGTCGAGCAACAAAAGGATGCTGCTTGGAAGCAATGGTTAACATCTTTTACATCTTTTAAAGACCGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

213

Amino Acids

24.64

Weight (kDa)

9.49

Isoelectric Point (pI)

24.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mpv17_PMP22 PF04117 131 - 190 6.9e-19 Mpv17 / PMP22 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000167)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G37980 AT4G37980 AT4G37990
fragaria_vesca FvH4_1g19210 FvH4_1g19220 FvH4_1g19240 FvH4_1g19240 FvH4_1g19261 FvH4_1g19262 FvH4_1g19263 FvH4_1g19263 FvH4_1g19265 FvH4_1g19281 FvH4_1g19281 FvH4_7g07240 FvH4_7g07240 FvH4_7g07240
malus_domestica MD01G1042500.v1.1 MD01G1042600.v1.1 MD01G1042800.v1.1 MD01G1042900.v1.1 MD05G1034100.v1.1 MD10G1035900.v1.1 MD10G1036000.v1.1 MD10G1155000.v1.1 MD10G1155100.v1.1 MD10G1155200.v1.1 MD10G1155400.v1.1 MD10G1155700.v1.1 MD10G1155800.v1.1 MD15G1308800.v1.1 MD15G1308900.v1.1
prunus_persica Prupe.6G205600_v2.0.a1 Prupe.6G205700_v2.0.a1 Prupe.6G205800_v2.0.a1 Prupe.6G205900_v2.0.a1 Prupe.6G206300_v2.0.a1 Prupe.6G206800_v2.0.a1 Prupe.6G207100_v2.0.a1 Prupe.6G207200_v2.0.a1 Prupe.6G207300_v2.0.a1 Prupe.6G207400_v2.0.a1 Prupe.6G207500_v2.0.a1 Prupe.6G207600_v2.0.a1 Prupe.6G207700_v2.0.a1 Prupe.6G207900_v2.0.a1
pyrus_communis pycom01g06970 pycom01g06980 pycom01g06990 pycom05g02460 pycom08g00750 pycom10g13410 pycom15g27310 pycom15g27320
rosa_chinensis RchiOBHm_Chr1g0314861 RchiOBHm_Chr1g0345441 RchiOBHm_Chr1g0345451 RchiOBHm_Chr1g0345621 RchiOBHm_Chr1g0345751 RchiOBHm_Chr1g0345861 RchiOBHm_Chr1g0345871 RchiOBHm_Chr1g0345891 RchiOBHm_Chr2g0094851 RchiOBHm_Chr2g0110471 RchiOBHm_Chr2g0110511 RchiOBHm_Chr2g0110531 RchiOBHm_Chr2g0110541 RchiOBHm_Chr2g0110571 RchiOBHm_Chr5g0039381 RchiOBHm_Chr5g0039391 RchiOBHm_Chr6g0270311 RchiOBHm_Chr6g0270331 RchiOBHm_Chr6g0270411 RchiOBHm_Chr6g0270431
rosa_laevigata RLG00000000515 RLG00000013793 RLG00000013797 RLG00000013799 RLG00000016525 RLG00000017808 RLG00000017811 RLG00000017813 RLG00000017816 RLG00000017819 RLG00000017822 RLG00000017824 RLG00000017825 RLG00000028835
rosa_multiflora Rmu_co8225458.1_g000001 Rmu_sc0000389.1_g000006 Rmu_sc0000389.1_g000014 Rmu_sc0000389.1_g000023 Rmu_sc0001292.1_g000012 Rmu_sc0001292.1_g000026 Rmu_sc0002145.1_g000003 Rmu_sc0002329.1_g000033 Rmu_sc0002833.1_g000044 Rmu_sc0004316.1_g000012 Rmu_sc0004439.1_g000003 Rmu_sc0006422.1_g000028 Rmu_sc0009479.1_g000012 Rmu_sc0010489.1_g000009 Rmu_sc0010489.1_g000010 Rmu_sc0017837.1_g000003 Rmu_sc0032320.1_g000001
rosa_roxburghii Rroxscaffold_1G00050770 Rroxscaffold_2G00133110 Rroxscaffold_2G00133140 Rroxscaffold_2G00133200 Rroxscaffold_2G00133270 Rroxscaffold_2G00133290 Rroxscaffold_2G00133300 Rroxscaffold_2G00133350 Rroxscaffold_4G00292490 Rroxscaffold_4G00309020 Rroxscaffold_4G00331740 Rroxscaffold_4G00331800 Rroxscaffold_6G00404470 Rroxscaffold_7G00197950 Rroxscaffold_7G00197990 Rroxscaffold_7G00198020
rosa_rugosa Rorug01G0002500 Rorug02G0047200 Rorug02G0047300 Rorug02G0047300 Rorug02G0047400 Rorug02G0168000 Rorug02G0168000 Rorug02G0168100 Rorug02G0168100 Rorug02G0168400.1 Rorug03G0157600 Rorug03G0157700 Rorug05G0112600 Rorug06G0054600 Rorug06G0054700
rosa_samantha Rh1AG013300 Rh1AG195600 Rh1AG195700 Rh1AG196000 Rh1BG004900 Rh1BG114300 Rh2AG132300 Rh2BG095500 Rh2BG229700 Rh2BG229800 Rh2CG097400 Rh2CG221500 Rh2CG221800 Rh2CG222100 Rh2CG222200 Rh2CG222500 Rh2CG222600 Rh2CG345000 Rh5BG269700 Rh6AG172900 Rh6AG173100 Rh6CG080500 Rh6DG075900 Rh6DG164700 Rh6DG164900 Rh6DG165200 Rh6DG165300
rosa_wichuraiana Rw0G015390 Rw1G000600 Rw1G016130 Rw1G016190 Rw2G007140 Rw2G016970 Rw2G016990 Rw2G017000 Rw3G018910 Rw3G018920 Rw3G018930 Rw5G024830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 24
AccB1I GGYRCC 1 cut(s) 24
AcoI YGGCCR 2 cut(s) 238, 473
AcsI RAATTY 1 cut(s) 493
AcuI CTGAAG 2 cut(s) 128, 186
AcyI GRCGYC 2 cut(s) 78, 90
AfaI GTAC 4 cut(s) 26, 113, 208, 251
AfiI CCNNNNNNNGG 1 cut(s) 457
AgsI TTSAA 5 cut(s) 55, 175, 280, 430, 485
AjnI CCWGG 1 cut(s) 60
AluBI AGCT 7 cut(s) 33, 72, 148, 164, 197, 283, 523
AluI AGCT 7 cut(s) 33, 72, 148, 164, 197, 283, 523
AlwNI CAGNNNCTG 1 cut(s) 15
AoxI GGCC 3 cut(s) 238, 349, 473
ApeKI GCWGC 4 cut(s) 33, 104, 317, 593
ApoI RAATTY 1 cut(s) 493
Asp718I GGTACC 1 cut(s) 24
AspS9I GGNCC 2 cut(s) 230, 350
AsuC2I CCSGG 1 cut(s) 307
AsuHPI GGTGA 2 cut(s) 278, 367
AvaII GGWCC 1 cut(s) 230
BalI TGGCCA 2 cut(s) 240, 475
BanI GGYRCC 1 cut(s) 24
BbsI GAAGAC 2 cut(s) 62, 134
BbvI GCAGC 4 cut(s) 20, 91, 304, 580
BccI CCATC 1 cut(s) 329
BcgI CGANNNNNNTGC 2 cut(s) 86, 120
BciT130I CCWGG 1 cut(s) 62
BclI TGATCA 1 cut(s) 409
BcnI CCSGG 1 cut(s) 307
BisI GCNGC 4 cut(s) 34, 105, 318, 594
BlsI GCNGC 4 cut(s) 35, 106, 319, 595
Bme1390I CCNGG 2 cut(s) 62, 307
Bme18I GGWCC 1 cut(s) 230
BmgT120I GGNCC 2 cut(s) 230, 350
BmiI GGNNCC 3 cut(s) 26, 232, 352
BmrFI CCNGG 2 cut(s) 62, 307
BmrI ACTGGG 1 cut(s) 103
BmsI GCATC 2 cut(s) 55, 580
BmuI ACTGGG 1 cut(s) 103
BoxI GACNNNNGTC 1 cut(s) 62
BpiI GAAGAC 2 cut(s) 62, 134
Bpu10I CCTNAGC 1 cut(s) 8
BpuMI CCSGG 1 cut(s) 307
BsaHI GRCGYC 2 cut(s) 78, 90
BsaJI CCNNGG 1 cut(s) 60
Bsc4I CCNNNNNNNGG 1 cut(s) 457
Bse1I ACTGG 3 cut(s) 109, 188, 400
Bse3DI GCAATG 3 cut(s) 99, 336, 611
BseBI CCWGG 1 cut(s) 62
BseDI CCNNGG 1 cut(s) 60
BseGI GGATG 3 cut(s) 46, 340, 595
BseLI CCNNNNNNNGG 1 cut(s) 457
BseMI GCAATG 3 cut(s) 99, 336, 611
BseMII CTCAG 2 cut(s) 22, 56
BseNI ACTGG 3 cut(s) 109, 188, 400
BseRI GAGGAG 1 cut(s) 515
BseXI GCAGC 4 cut(s) 20, 91, 304, 580
BshFI GGCC 3 cut(s) 240, 351, 475
BshNI GGYRCC 1 cut(s) 24
BsiSI CCGG 2 cut(s) 75, 307
BslI CCNNNNNNNGG 1 cut(s) 457
BsmI GAATGC 1 cut(s) 409
BsnI GGCC 3 cut(s) 240, 351, 475
Bsp143I GATC 1 cut(s) 409
BspANI GGCC 3 cut(s) 240, 351, 475
BspCNI CTCAG 2 cut(s) 21, 55
BspLI GGNNCC 3 cut(s) 26, 232, 352
BspT107I GGYRCC 1 cut(s) 24
BsrDI GCAATG 3 cut(s) 99, 336, 611
BsrI ACTGG 3 cut(s) 109, 188, 400
BssECI CCNNGG 1 cut(s) 60
BssMI GATC 1 cut(s) 409
BssNI GRCGYC 2 cut(s) 78, 90
Bst2UI CCWGG 1 cut(s) 62
Bst4CI ACNGT 2 cut(s) 140, 557
Bst6I CTCTTC 1 cut(s) 425
BstACI GRCGYC 2 cut(s) 78, 90
BstDEI CTNAG 2 cut(s) 8, 42
BstF5I GGATG 3 cut(s) 46, 340, 595
BstKTI GATC 1 cut(s) 412
BstMBI GATC 1 cut(s) 409
BstMWI GCNNNNNNNGC 1 cut(s) 326
BstNI CCWGG 1 cut(s) 62
BstPAI GACNNNNGTC 1 cut(s) 62
BstSCI CCNGG 2 cut(s) 60, 305
BstV1I GCAGC 4 cut(s) 20, 91, 304, 580
BstV2I GAAGAC 2 cut(s) 62, 134
BsuRI GGCC 3 cut(s) 240, 351, 475
BtsCI GGATG 3 cut(s) 46, 340, 595
BtsIMutI CAGTG 2 cut(s) 393, 562
CaiI CAGNNNCTG 1 cut(s) 15
Cfr13I GGNCC 2 cut(s) 230, 350
CseI GACGC 2 cut(s) 67, 79
Csp6I GTAC 4 cut(s) 25, 112, 207, 250
CviAII CATG 2 cut(s) 382, 570
CviQI GTAC 4 cut(s) 25, 112, 207, 250
DdeI CTNAG 2 cut(s) 8, 42
DpnI GATC 1 cut(s) 411
DpnII GATC 1 cut(s) 409
DraI TTTAAA 1 cut(s) 631
EaeI YGGCCR 2 cut(s) 238, 473
Eam1104I CTCTTC 1 cut(s) 425
EarI CTCTTC 1 cut(s) 425
Eco47I GGWCC 1 cut(s) 230
Eco57I CTGAAG 2 cut(s) 128, 186
EcoRII CCWGG 1 cut(s) 60
FaeI CATG 2 cut(s) 385, 573
FaiI YATR 7 cut(s) 272, 383, 443, 455, 504, 531, 571
FatI CATG 2 cut(s) 381, 569
FbaI TGATCA 1 cut(s) 409
Fnu4HI GCNGC 4 cut(s) 34, 105, 318, 594
FokI GGATG 3 cut(s) 33, 347, 602
Fsp4HI GCNGC 4 cut(s) 34, 105, 318, 594
GluI GCNGC 4 cut(s) 34, 105, 318, 594
HaeIII GGCC 3 cut(s) 240, 351, 475
HapII CCGG 2 cut(s) 75, 307
HgaI GACGC 2 cut(s) 67, 79
Hin1I GRCGYC 2 cut(s) 78, 90
Hin1II CATG 2 cut(s) 385, 573
HincII GTYRAC 2 cut(s) 181, 612
HindII GTYRAC 2 cut(s) 181, 612
HindIII AAGCTT 1 cut(s) 281
HpaI GTTAAC 2 cut(s) 181, 612
HpaII CCGG 2 cut(s) 75, 307
HphI GGTGA 2 cut(s) 278, 367
Hpy166II GTNNAC 2 cut(s) 181, 612
Hpy188I TCNGA 1 cut(s) 500
Hpy188III TCNNGA 2 cut(s) 16, 155
Hpy8I GTNNAC 2 cut(s) 181, 612
Hpy99I CGWCG 1 cut(s) 95
HpyAV CCTTC 1 cut(s) 412
HpyCH4III ACNGT 2 cut(s) 140, 557
HpyCH4V TGCA 1 cut(s) 491
HpyF10VI GCNNNNNNNGC 1 cut(s) 326
HpyF3I CTNAG 2 cut(s) 8, 42
Hsp92I GRCGYC 2 cut(s) 78, 90
Hsp92II CATG 2 cut(s) 385, 573
KpnI GGTACC 1 cut(s) 28
Ksp22I TGATCA 1 cut(s) 409
KspAI GTTAAC 2 cut(s) 181, 612
Kzo9I GATC 1 cut(s) 409
LmnI GCTCC 2 cut(s) 77, 528
Lsp1109I GCAGC 4 cut(s) 20, 91, 304, 580
LweI GCATC 2 cut(s) 55, 580
MalI GATC 1 cut(s) 411
MboI GATC 1 cut(s) 409
MboII GAAGA 7 cut(s) 67, 134, 179, 364, 434, 442, 532
MfeI CAATTG 1 cut(s) 477
MlsI TGGCCA 2 cut(s) 240, 475
MluCI AATT 3 cut(s) 298, 477, 493
MluNI TGGCCA 2 cut(s) 240, 475
MmeI TCCRAC 2 cut(s) 208, 531
MnlI CCTC 5 cut(s) 47, 92, 454, 507, 536
Mox20I TGGCCA 2 cut(s) 240, 475
MscI TGGCCA 2 cut(s) 240, 475
MseI TTAA 4 cut(s) 180, 534, 611, 630
MslI CAYNNNNRTG 1 cut(s) 380
Msp20I TGGCCA 2 cut(s) 240, 475
MspI CCGG 2 cut(s) 75, 307
MspR9I CCNGG 2 cut(s) 62, 307
MunI CAATTG 1 cut(s) 477
Mva1269I GAATGC 1 cut(s) 409
MvaI CCWGG 1 cut(s) 62
MwoI GCNNNNNNNGC 1 cut(s) 326
NciI CCSGG 1 cut(s) 307
NdeII GATC 1 cut(s) 409
NlaIII CATG 2 cut(s) 385, 573
NlaIV GGNNCC 3 cut(s) 26, 232, 352
PctI GAATGC 1 cut(s) 409
PkrI GCNGC 4 cut(s) 35, 106, 319, 595
PshAI GACNNNNGTC 1 cut(s) 62
Psp6I CCWGG 1 cut(s) 60
PspGI CCWGG 1 cut(s) 60
PspN4I GGNNCC 3 cut(s) 26, 232, 352
PspPI GGNCC 2 cut(s) 230, 350
PstNI CAGNNNCTG 1 cut(s) 15
RsaI GTAC 4 cut(s) 26, 113, 208, 251
RsaNI GTAC 4 cut(s) 25, 112, 207, 250
RseI CAYNNNNRTG 1 cut(s) 380
SaqAI TTAA 4 cut(s) 180, 534, 611, 630
SatI GCNGC 4 cut(s) 34, 105, 318, 594
Sau3AI GATC 1 cut(s) 409
Sau96I GGNCC 2 cut(s) 230, 350
ScrFI CCNGG 2 cut(s) 62, 307
SfaNI GCATC 2 cut(s) 55, 580
SinI GGWCC 1 cut(s) 230
SmiMI CAYNNNNRTG 1 cut(s) 380
Sse9I AATT 3 cut(s) 298, 477, 493
StyD4I CCNGG 2 cut(s) 60, 305
TaaI ACNGT 2 cut(s) 140, 557
TaqI TCGA 1 cut(s) 576
TasI AATT 3 cut(s) 298, 477, 493
TatI WGTACW 2 cut(s) 111, 206
Tru1I TTAA 4 cut(s) 180, 534, 611, 630
Tru9I TTAA 4 cut(s) 180, 534, 611, 630
TscAI CASTG 2 cut(s) 400, 562
TseI GCWGC 4 cut(s) 33, 104, 317, 593
TspDTI ATGAA 2 cut(s) 259, 430
TspRI CASTG 2 cut(s) 400, 562
VpaK11BI GGWCC 1 cut(s) 230
XapI RAATTY 1 cut(s) 493
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.