MD10G1155700.v1.1

Dehydrogenase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
OG0000167
Physical Location & Seq
Reverse (-)
24379962 .. 24380705
744 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1155700.v1.1.491

Sequence Viewer

Length: 471 bp
ATGGGGGTTAAGGTTACTGTCATCAGTACCTCCCCTAATAAGAAGGATGAAGCAGTTGAACATCTCTGCGCAGATTCGTTTTTGGTCAGCCGCAATGAAGATCAGATGCAGGCTGCCATGGGGACATTGGATGGTATCATTGACACGGTTTCTGCACTCCACCCTCTATTGCCTTTGATTGGTTTGTTGAAGTCTCACGGAAAGCTAGTGATGGTTGGAGCACCAGAGAAGCCTCTTGAGCTTCCTGTTTTTCCTTTGCTTGTGGGAAGGAAAATTGTAGCTGGCAGTAACATTGGGGGCATGAAGGAGACGCAAGTGATGATTGATTTCGCAGCCAAGGATAACATAATAGCTGATATTGAGGTTATCCCAATGGATTATGTGAACATTGTCATGGAGCGCCTTCTTAAAGCAGATGTCAGATATCGATTTGTCATCGATATTGGAAACACATTGAAGTCTACCTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
ADH_N ADH_zinc_N

Protein Analysis

157

Amino Acids

16.95

Weight (kDa)

5.58

Isoelectric Point (pI)

20.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ADH_zinc_N PF00107 1 - 112 2.5e-12 Zinc-binding dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000167)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G37980 AT4G37980 AT4G37990
fragaria_vesca FvH4_1g19210 FvH4_1g19220 FvH4_1g19240 FvH4_1g19240 FvH4_1g19261 FvH4_1g19262 FvH4_1g19263 FvH4_1g19263 FvH4_1g19265 FvH4_1g19281 FvH4_1g19281 FvH4_7g07240 FvH4_7g07240 FvH4_7g07240
malus_domestica MD01G1042500.v1.1 MD01G1042600.v1.1 MD01G1042800.v1.1 MD01G1042900.v1.1 MD05G1034100.v1.1 MD10G1035900.v1.1 MD10G1036000.v1.1 MD10G1155000.v1.1 MD10G1155100.v1.1 MD10G1155200.v1.1 MD10G1155400.v1.1 MD10G1155700.v1.1 MD10G1155800.v1.1 MD15G1308800.v1.1 MD15G1308900.v1.1
prunus_persica Prupe.6G205600_v2.0.a1 Prupe.6G205700_v2.0.a1 Prupe.6G205800_v2.0.a1 Prupe.6G205900_v2.0.a1 Prupe.6G206300_v2.0.a1 Prupe.6G206800_v2.0.a1 Prupe.6G207100_v2.0.a1 Prupe.6G207200_v2.0.a1 Prupe.6G207300_v2.0.a1 Prupe.6G207400_v2.0.a1 Prupe.6G207500_v2.0.a1 Prupe.6G207600_v2.0.a1 Prupe.6G207700_v2.0.a1 Prupe.6G207900_v2.0.a1
pyrus_communis pycom01g06970 pycom01g06980 pycom01g06990 pycom05g02460 pycom08g00750 pycom10g13410 pycom15g27310 pycom15g27320
rosa_chinensis RchiOBHm_Chr1g0314861 RchiOBHm_Chr1g0345441 RchiOBHm_Chr1g0345451 RchiOBHm_Chr1g0345621 RchiOBHm_Chr1g0345751 RchiOBHm_Chr1g0345861 RchiOBHm_Chr1g0345871 RchiOBHm_Chr1g0345891 RchiOBHm_Chr2g0094851 RchiOBHm_Chr2g0110471 RchiOBHm_Chr2g0110511 RchiOBHm_Chr2g0110531 RchiOBHm_Chr2g0110541 RchiOBHm_Chr2g0110571 RchiOBHm_Chr5g0039381 RchiOBHm_Chr5g0039391 RchiOBHm_Chr6g0270311 RchiOBHm_Chr6g0270331 RchiOBHm_Chr6g0270411 RchiOBHm_Chr6g0270431
rosa_laevigata RLG00000000515 RLG00000013793 RLG00000013797 RLG00000013799 RLG00000016525 RLG00000017808 RLG00000017811 RLG00000017813 RLG00000017816 RLG00000017819 RLG00000017822 RLG00000017824 RLG00000017825 RLG00000028835
rosa_multiflora Rmu_co8225458.1_g000001 Rmu_sc0000389.1_g000006 Rmu_sc0000389.1_g000014 Rmu_sc0000389.1_g000023 Rmu_sc0001292.1_g000012 Rmu_sc0001292.1_g000026 Rmu_sc0002145.1_g000003 Rmu_sc0002329.1_g000033 Rmu_sc0002833.1_g000044 Rmu_sc0004316.1_g000012 Rmu_sc0004439.1_g000003 Rmu_sc0006422.1_g000028 Rmu_sc0009479.1_g000012 Rmu_sc0010489.1_g000009 Rmu_sc0010489.1_g000010 Rmu_sc0017837.1_g000003 Rmu_sc0032320.1_g000001
rosa_roxburghii Rroxscaffold_1G00050770 Rroxscaffold_2G00133110 Rroxscaffold_2G00133140 Rroxscaffold_2G00133200 Rroxscaffold_2G00133270 Rroxscaffold_2G00133290 Rroxscaffold_2G00133300 Rroxscaffold_2G00133350 Rroxscaffold_4G00292490 Rroxscaffold_4G00309020 Rroxscaffold_4G00331740 Rroxscaffold_4G00331800 Rroxscaffold_6G00404470 Rroxscaffold_7G00197950 Rroxscaffold_7G00197990 Rroxscaffold_7G00198020
rosa_rugosa Rorug01G0002500 Rorug02G0047200 Rorug02G0047300 Rorug02G0047300 Rorug02G0047400 Rorug02G0168000 Rorug02G0168000 Rorug02G0168100 Rorug02G0168100 Rorug02G0168400.1 Rorug03G0157600 Rorug03G0157700 Rorug05G0112600 Rorug06G0054600 Rorug06G0054700
rosa_samantha Rh1AG013300 Rh1AG195600 Rh1AG195700 Rh1AG196000 Rh1BG004900 Rh1BG114300 Rh2AG132300 Rh2BG095500 Rh2BG229700 Rh2BG229800 Rh2CG097400 Rh2CG221500 Rh2CG221800 Rh2CG222100 Rh2CG222200 Rh2CG222500 Rh2CG222600 Rh2CG345000 Rh5BG269700 Rh6AG172900 Rh6AG173100 Rh6CG080500 Rh6DG075900 Rh6DG164700 Rh6DG164900 Rh6DG165200 Rh6DG165300
rosa_wichuraiana Rw0G015390 Rw1G000600 Rw1G016130 Rw1G016190 Rw2G007140 Rw2G016970 Rw2G016990 Rw2G017000 Rw3G018910 Rw3G018920 Rw3G018930 Rw5G024830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 70
AccI GTMKAC 1 cut(s) 461
AciI CCGC 1 cut(s) 91
AfaI GTAC 1 cut(s) 28
AfiI CCNNNNNNNGG 1 cut(s) 179
AgsI TTSAA 3 cut(s) 59, 190, 457
AluBI AGCT 4 cut(s) 205, 241, 281, 353
AluI AGCT 4 cut(s) 205, 241, 281, 353
Alw21I GWGCWC 1 cut(s) 223
Alw26I GTCTC 2 cut(s) 198, 302
ApeKI GCWGC 2 cut(s) 113, 332
AspLEI GCGC 2 cut(s) 71, 402
Bbv12I GWGCWC 1 cut(s) 223
BbvI GCAGC 2 cut(s) 100, 344
BccI CCATC 2 cut(s) 125, 205
BcoDI GTCTC 2 cut(s) 198, 302
BfaI CTAG 1 cut(s) 206
BfoI RGCGCY 1 cut(s) 403
BisI GCNGC 3 cut(s) 91, 114, 333
BlsI GCNGC 3 cut(s) 92, 115, 334
BmsI GCATC 1 cut(s) 96
BpuEI CTTGAG 1 cut(s) 257
Bsa29I ATCGAT 2 cut(s) 427, 438
BsaJI CCNNGG 2 cut(s) 117, 336
Bsc4I CCNNNNNNNGG 1 cut(s) 179
Bse3DI GCAATG 1 cut(s) 100
BseCI ATCGAT 2 cut(s) 427, 438
BseDI CCNNGG 2 cut(s) 117, 336
BseGI GGATG 2 cut(s) 52, 136
BseLI CCNNNNNNNGG 1 cut(s) 179
BseMI GCAATG 1 cut(s) 100
BseXI GCAGC 2 cut(s) 100, 344
BsgI GTGCAG 1 cut(s) 138
BshVI ATCGAT 2 cut(s) 427, 438
BsiHKAI GWGCWC 1 cut(s) 223
BslFI GGGAC 1 cut(s) 136
BslI CCNNNNNNNGG 1 cut(s) 179
BsmAI GTCTC 2 cut(s) 198, 302
BsmBI CGTCTC 1 cut(s) 302
BsmFI GGGAC 1 cut(s) 136
Bsp1286I GDGCHC 1 cut(s) 223
Bsp143I GATC 1 cut(s) 100
Bsp19I CCATGG 1 cut(s) 117
BspACI CCGC 1 cut(s) 91
BspDI ATCGAT 2 cut(s) 427, 438
BsrDI GCAATG 1 cut(s) 100
BssECI CCNNGG 2 cut(s) 117, 336
BssMI GATC 1 cut(s) 100
BssT1I CCWWGG 2 cut(s) 117, 336
Bst4CI ACNGT 2 cut(s) 19, 148
BstC8I GCNNGC 2 cut(s) 111, 283
BstDSI CCRYGG 1 cut(s) 117
BstF5I GGATG 2 cut(s) 52, 136
BstH2I RGCGCY 1 cut(s) 403
BstHHI GCGC 2 cut(s) 71, 402
BstKTI GATC 1 cut(s) 103
BstMAI GTCTC 2 cut(s) 198, 302
BstMBI GATC 1 cut(s) 100
BstMWI GCNNNNNNNGC 1 cut(s) 238
BstV1I GCAGC 2 cut(s) 100, 344
Bsu15I ATCGAT 2 cut(s) 427, 438
BsuTUI ATCGAT 2 cut(s) 427, 438
BtgI CCRYGG 1 cut(s) 117
BtsCI GGATG 2 cut(s) 52, 136
Cac8I GCNNGC 2 cut(s) 111, 283
CfoI GCGC 2 cut(s) 71, 402
ClaI ATCGAT 2 cut(s) 427, 438
CseI GACGC 1 cut(s) 319
Csp6I GTAC 1 cut(s) 27
CviAII CATG 3 cut(s) 118, 301, 394
CviJI RGCY 8 cut(s) 90, 113, 205, 232, 241, 281, 335, 353
CviKI_1 RGCY 8 cut(s) 90, 113, 205, 232, 241, 281, 335, 353
CviQI GTAC 1 cut(s) 27
DpnI GATC 1 cut(s) 102
DpnII GATC 1 cut(s) 100
Eco130I CCWWGG 2 cut(s) 117, 336
Eco32I GATATC 1 cut(s) 425
EcoRV GATATC 1 cut(s) 425
EcoT14I CCWWGG 2 cut(s) 117, 336
ErhI CCWWGG 2 cut(s) 117, 336
Esp3I CGTCTC 1 cut(s) 302
FaeI CATG 3 cut(s) 121, 304, 397
FaiI YATR 5 cut(s) 119, 302, 347, 381, 395
FalI AAGNNNNNCTT 1 cut(s) 449
FaqI GGGAC 1 cut(s) 136
FatI CATG 3 cut(s) 117, 300, 393
FblI GTMKAC 1 cut(s) 461
Fnu4HI GCNGC 3 cut(s) 91, 114, 333
FokI GGATG 2 cut(s) 59, 143
Fsp4HI GCNGC 3 cut(s) 91, 114, 333
FspBI CTAG 1 cut(s) 206
FspI TGCGCA 1 cut(s) 70
GlaI GCGC 2 cut(s) 70, 401
GluI GCNGC 3 cut(s) 91, 114, 333
HaeII RGCGCY 1 cut(s) 403
HgaI GACGC 1 cut(s) 319
HhaI GCGC 2 cut(s) 71, 402
Hin1II CATG 3 cut(s) 121, 304, 397
Hin6I GCGC 2 cut(s) 69, 400
HinP1I GCGC 2 cut(s) 69, 400
HinfI GANTC 1 cut(s) 74
Hpy166II GTNNAC 2 cut(s) 385, 462
Hpy188I TCNGA 2 cut(s) 105, 422
Hpy188III TCNNGA 1 cut(s) 236
Hpy8I GTNNAC 2 cut(s) 385, 462
HpyAV CCTTC 4 cut(s) 37, 261, 298, 413
HpyCH4III ACNGT 2 cut(s) 19, 148
HpyCH4V TGCA 2 cut(s) 109, 155
HpyF10VI GCNNNNNNNGC 1 cut(s) 238
Hsp92II CATG 3 cut(s) 121, 304, 397
HspAI GCGC 2 cut(s) 69, 400
Kzo9I GATC 1 cut(s) 100
LmnI GCTCC 2 cut(s) 218, 397
LpnPI CCDG 4 cut(s) 95, 237, 258, 267
Lsp1109I GCAGC 2 cut(s) 100, 344
LweI GCATC 1 cut(s) 96
MaeI CTAG 1 cut(s) 206
MaeIII GTNAC 2 cut(s) 13, 287
MalI GATC 1 cut(s) 102
MboI GATC 1 cut(s) 100
MboII GAAGA 1 cut(s) 110
MhlI GDGCHC 1 cut(s) 223
MluCI AATT 1 cut(s) 273
MmeI TCCRAC 1 cut(s) 196
MnlI CCTC 4 cut(s) 40, 174, 243, 355
MseI TTAA 2 cut(s) 9, 408
MslI CAYNNNNRTG 1 cut(s) 392
MwoI GCNNNNNNNGC 1 cut(s) 238
NcoI CCATGG 1 cut(s) 117
NdeII GATC 1 cut(s) 100
NlaIII CATG 3 cut(s) 121, 304, 397
NsbI TGCGCA 1 cut(s) 70
PfeI GAWTC 1 cut(s) 74
PkrI GCNGC 3 cut(s) 92, 115, 334
RsaI GTAC 1 cut(s) 28
RsaNI GTAC 1 cut(s) 27
RseI CAYNNNNRTG 1 cut(s) 392
SaqAI TTAA 2 cut(s) 9, 408
SatI GCNGC 3 cut(s) 91, 114, 333
Sau3AI GATC 1 cut(s) 100
SduI GDGCHC 1 cut(s) 223
SetI ASST 8 cut(s) 15, 32, 207, 243, 283, 355, 366, 467
SfaNI GCATC 1 cut(s) 96
SmiMI CAYNNNNRTG 1 cut(s) 392
SmlI CTYRAG 1 cut(s) 236
SmoI CTYRAG 1 cut(s) 236
Sse9I AATT 1 cut(s) 273
SsiI CCGC 1 cut(s) 91
SspMI CTAG 1 cut(s) 206
StyI CCWWGG 2 cut(s) 117, 336
TaaI ACNGT 2 cut(s) 19, 148
TaqI TCGA 2 cut(s) 427, 438
TasI AATT 1 cut(s) 273
TauI GCSGC 1 cut(s) 93
TfiI GAWTC 1 cut(s) 74
Tru1I TTAA 2 cut(s) 9, 408
Tru9I TTAA 2 cut(s) 9, 408
TseI GCWGC 2 cut(s) 113, 332
TspDTI ATGAA 3 cut(s) 63, 111, 317
TspGWI ACGGA 1 cut(s) 213
XcmI CCANNNNNNNNNTGG 1 cut(s) 124
XmiI GTMKAC 1 cut(s) 461
XspI CTAG 1 cut(s) 206
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.