Rh2AG132300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0000167
Physical Location & Seq
Forward (+)
11962039 .. 11962233
195 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG132300.1

Sequence Viewer

Length: 195 bp
ATGGAACTTGCTCTTGCTAGGGACGTATTTGTAGAGCGCATGTGTAGGGATGACGTAGAAGATGAATTGATCCTGGAAATTGTTGAGGACGATGACGATGAAGCCGGCTATGCAACTGAAGGTGAAGTCGTAGGTCCAAAAGCATCGGGAGGAGGTGAAGAGGAAGCGGAGAGTGAAAGATTAGAGAATGGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

64

Amino Acids

7.0

Weight (kDa)

4.05

Isoelectric Point (pI)

39.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000167)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G37980 AT4G37980 AT4G37990
fragaria_vesca FvH4_1g19210 FvH4_1g19220 FvH4_1g19240 FvH4_1g19240 FvH4_1g19261 FvH4_1g19262 FvH4_1g19263 FvH4_1g19263 FvH4_1g19265 FvH4_1g19281 FvH4_1g19281 FvH4_7g07240 FvH4_7g07240 FvH4_7g07240
malus_domestica MD01G1042500.v1.1 MD01G1042600.v1.1 MD01G1042800.v1.1 MD01G1042900.v1.1 MD05G1034100.v1.1 MD10G1035900.v1.1 MD10G1036000.v1.1 MD10G1155000.v1.1 MD10G1155100.v1.1 MD10G1155200.v1.1 MD10G1155400.v1.1 MD10G1155700.v1.1 MD10G1155800.v1.1 MD15G1308800.v1.1 MD15G1308900.v1.1
prunus_persica Prupe.6G205600_v2.0.a1 Prupe.6G205700_v2.0.a1 Prupe.6G205800_v2.0.a1 Prupe.6G205900_v2.0.a1 Prupe.6G206300_v2.0.a1 Prupe.6G206800_v2.0.a1 Prupe.6G207100_v2.0.a1 Prupe.6G207200_v2.0.a1 Prupe.6G207300_v2.0.a1 Prupe.6G207400_v2.0.a1 Prupe.6G207500_v2.0.a1 Prupe.6G207600_v2.0.a1 Prupe.6G207700_v2.0.a1 Prupe.6G207900_v2.0.a1
pyrus_communis pycom01g06970 pycom01g06980 pycom01g06990 pycom05g02460 pycom08g00750 pycom10g13410 pycom15g27310 pycom15g27320
rosa_chinensis RchiOBHm_Chr1g0314861 RchiOBHm_Chr1g0345441 RchiOBHm_Chr1g0345451 RchiOBHm_Chr1g0345621 RchiOBHm_Chr1g0345751 RchiOBHm_Chr1g0345861 RchiOBHm_Chr1g0345871 RchiOBHm_Chr1g0345891 RchiOBHm_Chr2g0094851 RchiOBHm_Chr2g0110471 RchiOBHm_Chr2g0110511 RchiOBHm_Chr2g0110531 RchiOBHm_Chr2g0110541 RchiOBHm_Chr2g0110571 RchiOBHm_Chr5g0039381 RchiOBHm_Chr5g0039391 RchiOBHm_Chr6g0270311 RchiOBHm_Chr6g0270331 RchiOBHm_Chr6g0270411 RchiOBHm_Chr6g0270431
rosa_laevigata RLG00000000515 RLG00000013793 RLG00000013797 RLG00000013799 RLG00000016525 RLG00000017808 RLG00000017811 RLG00000017813 RLG00000017816 RLG00000017819 RLG00000017822 RLG00000017824 RLG00000017825 RLG00000028835
rosa_multiflora Rmu_co8225458.1_g000001 Rmu_sc0000389.1_g000006 Rmu_sc0000389.1_g000014 Rmu_sc0000389.1_g000023 Rmu_sc0001292.1_g000012 Rmu_sc0001292.1_g000026 Rmu_sc0002145.1_g000003 Rmu_sc0002329.1_g000033 Rmu_sc0002833.1_g000044 Rmu_sc0004316.1_g000012 Rmu_sc0004439.1_g000003 Rmu_sc0006422.1_g000028 Rmu_sc0009479.1_g000012 Rmu_sc0010489.1_g000009 Rmu_sc0010489.1_g000010 Rmu_sc0017837.1_g000003 Rmu_sc0032320.1_g000001
rosa_roxburghii Rroxscaffold_1G00050770 Rroxscaffold_2G00133110 Rroxscaffold_2G00133140 Rroxscaffold_2G00133200 Rroxscaffold_2G00133270 Rroxscaffold_2G00133290 Rroxscaffold_2G00133300 Rroxscaffold_2G00133350 Rroxscaffold_4G00292490 Rroxscaffold_4G00309020 Rroxscaffold_4G00331740 Rroxscaffold_4G00331800 Rroxscaffold_6G00404470 Rroxscaffold_7G00197950 Rroxscaffold_7G00197990 Rroxscaffold_7G00198020
rosa_rugosa Rorug01G0002500 Rorug02G0047200 Rorug02G0047300 Rorug02G0047300 Rorug02G0047400 Rorug02G0168000 Rorug02G0168000 Rorug02G0168100 Rorug02G0168100 Rorug02G0168400.1 Rorug03G0157600 Rorug03G0157700 Rorug05G0112600 Rorug06G0054600 Rorug06G0054700
rosa_samantha Rh1AG013300 Rh1AG195600 Rh1AG195700 Rh1AG196000 Rh1BG004900 Rh1BG114300 Rh2AG132300 Rh2BG095500 Rh2BG229700 Rh2BG229800 Rh2CG097400 Rh2CG221500 Rh2CG221800 Rh2CG222100 Rh2CG222200 Rh2CG222500 Rh2CG222600 Rh2CG345000 Rh5BG269700 Rh6AG172900 Rh6AG173100 Rh6CG080500 Rh6DG075900 Rh6DG164700 Rh6DG164900 Rh6DG165200 Rh6DG165300
rosa_wichuraiana Rw0G015390 Rw1G000600 Rw1G016130 Rw1G016190 Rw2G007140 Rw2G016970 Rw2G016990 Rw2G017000 Rw3G018910 Rw3G018920 Rw3G018930 Rw5G024830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 167
AclWI GGATC 1 cut(s) 64
AcuI CTGAAG 1 cut(s) 138
AjnI CCWGG 1 cut(s) 72
AlwI GGATC 1 cut(s) 64
AspLEI GCGC 1 cut(s) 39
AspS9I GGNCC 1 cut(s) 134
AsuHPI GGTGA 2 cut(s) 134, 167
AvaII GGWCC 1 cut(s) 134
BciT130I CCWGG 1 cut(s) 74
BfaI CTAG 1 cut(s) 18
Bme1390I CCNGG 1 cut(s) 74
Bme18I GGWCC 1 cut(s) 134
BmgT120I GGNCC 1 cut(s) 134
BmrFI CCNGG 1 cut(s) 74
BmsI GCATC 1 cut(s) 152
Bse118I RCCGGY 1 cut(s) 104
BseBI CCWGG 1 cut(s) 74
BseGI GGATG 1 cut(s) 55
BseRI GAGGAG 1 cut(s) 165
BsiSI CCGG 1 cut(s) 105
BslFI GGGAC 1 cut(s) 35
BsmFI GGGAC 1 cut(s) 35
Bsp143I GATC 1 cut(s) 69
BspACI CCGC 1 cut(s) 167
BspPI GGATC 1 cut(s) 64
BsrFI RCCGGY 1 cut(s) 104
BssAI RCCGGY 1 cut(s) 104
BssMI GATC 1 cut(s) 69
Bst2UI CCWGG 1 cut(s) 74
Bst6I CTCTTC 1 cut(s) 153
BstC8I GCNNGC 1 cut(s) 106
BstF5I GGATG 1 cut(s) 55
BstHHI GCGC 1 cut(s) 39
BstKTI GATC 1 cut(s) 72
BstMBI GATC 1 cut(s) 69
BstMWI GCNNNNNNNGC 1 cut(s) 110
BstNI CCWGG 1 cut(s) 74
BstNSI RCATGY 1 cut(s) 43
BstSCI CCNGG 1 cut(s) 72
BtsCI GGATG 1 cut(s) 55
Cac8I GCNNGC 1 cut(s) 106
CfoI GCGC 1 cut(s) 39
Cfr10I RCCGGY 1 cut(s) 104
Cfr13I GGNCC 1 cut(s) 134
CviAII CATG 1 cut(s) 40
CviJI RGCY 2 cut(s) 104, 108
CviKI_1 RGCY 2 cut(s) 104, 108
DpnI GATC 1 cut(s) 71
DpnII GATC 1 cut(s) 69
Eam1104I CTCTTC 1 cut(s) 153
EarI CTCTTC 1 cut(s) 153
Eco47I GGWCC 1 cut(s) 134
Eco57I CTGAAG 1 cut(s) 138
EcoRII CCWGG 1 cut(s) 72
FaeI CATG 1 cut(s) 43
FaiI YATR 2 cut(s) 41, 111
FaqI GGGAC 1 cut(s) 35
FatI CATG 1 cut(s) 39
FokI GGATG 1 cut(s) 62
FspBI CTAG 1 cut(s) 18
GlaI GCGC 1 cut(s) 38
HapII CCGG 1 cut(s) 105
HhaI GCGC 1 cut(s) 39
Hin1II CATG 1 cut(s) 43
Hin6I GCGC 1 cut(s) 37
HinP1I GCGC 1 cut(s) 37
HpaII CCGG 1 cut(s) 105
HphI GGTGA 2 cut(s) 134, 167
Hpy188III TCNNGA 1 cut(s) 147
HpyAV CCTTC 1 cut(s) 113
HpyCH4IV ACGT 2 cut(s) 24, 54
HpyCH4V TGCA 1 cut(s) 113
HpyF10VI GCNNNNNNNGC 1 cut(s) 110
HpySE526I ACGT 2 cut(s) 24, 54
Hsp92II CATG 1 cut(s) 43
HspAI GCGC 1 cut(s) 37
KroI GCCGGC 1 cut(s) 104
KroNI GCCGGC 1 cut(s) 106
Kzo9I GATC 1 cut(s) 69
LpnPI CCDG 3 cut(s) 59, 86, 118
LweI GCATC 1 cut(s) 152
MaeI CTAG 1 cut(s) 18
MaeII ACGT 2 cut(s) 24, 54
MalI GATC 1 cut(s) 71
MboI GATC 1 cut(s) 69
MboII GAAGA 2 cut(s) 71, 170
MluCI AATT 2 cut(s) 65, 78
MnlI CCTC 4 cut(s) 79, 143, 146, 154
MroNI GCCGGC 1 cut(s) 104
MspI CCGG 1 cut(s) 105
MspR9I CCNGG 1 cut(s) 74
MvaI CCWGG 1 cut(s) 74
MwoI GCNNNNNNNGC 1 cut(s) 110
NaeI GCCGGC 1 cut(s) 106
NdeII GATC 1 cut(s) 69
NgoMIV GCCGGC 1 cut(s) 104
NlaIII CATG 1 cut(s) 43
NspI RCATGY 1 cut(s) 43
PdiI GCCGGC 1 cut(s) 106
PfoI TCCNGGA 1 cut(s) 72
Psp6I CCWGG 1 cut(s) 72
PspGI CCWGG 1 cut(s) 72
PspPI GGNCC 1 cut(s) 134
Sau3AI GATC 1 cut(s) 69
Sau96I GGNCC 1 cut(s) 134
ScrFI CCNGG 1 cut(s) 74
SetI ASST 5 cut(s) 27, 57, 124, 136, 157
SfaNI GCATC 1 cut(s) 152
SgeI CNNG 8 cut(s) 20, 26, 30, 52, 85, 86, 117, 159
SinI GGWCC 1 cut(s) 134
Sse9I AATT 2 cut(s) 65, 78
SsiI CCGC 1 cut(s) 167
SspMI CTAG 1 cut(s) 18
StyD4I CCNGG 1 cut(s) 72
TaiI ACGT 2 cut(s) 27, 57
TasI AATT 2 cut(s) 65, 78
TspDTI ATGAA 2 cut(s) 78, 114
VpaK11BI GGWCC 1 cut(s) 134
XceI RCATGY 1 cut(s) 43
XspI CTAG 1 cut(s) 18
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.