Rh2CG222600

Dehydrogenase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0000167
Physical Location & Seq
Forward (+)
22387819 .. 22388115
297 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG222600.1

Sequence Viewer

Length: 210 bp
ATGGGAAGGAAGATGGTAGCTAGTAGCGGCGGTGGACGTATGAAGGAGACACAAGAGATGATTGATTTTGCAGCCAAGCACAACATAACAGCAGACATCGAGGTTATCCCAATTGACTACTTGAACACTGCCATGGAGCGCCTTGCCAAAGCAGACGTCAGATACCGTTTTGTCATTGACATTGGAAACACACTGAAGGCTAGCTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
ADH_N ADH_zinc_N

Protein Analysis

69

Amino Acids

7.65

Weight (kDa)

8.09

Isoelectric Point (pI)

29.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000167)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G37980 AT4G37980 AT4G37990
fragaria_vesca FvH4_1g19210 FvH4_1g19220 FvH4_1g19240 FvH4_1g19240 FvH4_1g19261 FvH4_1g19262 FvH4_1g19263 FvH4_1g19263 FvH4_1g19265 FvH4_1g19281 FvH4_1g19281 FvH4_7g07240 FvH4_7g07240 FvH4_7g07240
malus_domestica MD01G1042500.v1.1 MD01G1042600.v1.1 MD01G1042800.v1.1 MD01G1042900.v1.1 MD05G1034100.v1.1 MD10G1035900.v1.1 MD10G1036000.v1.1 MD10G1155000.v1.1 MD10G1155100.v1.1 MD10G1155200.v1.1 MD10G1155400.v1.1 MD10G1155700.v1.1 MD10G1155800.v1.1 MD15G1308800.v1.1 MD15G1308900.v1.1
prunus_persica Prupe.6G205600_v2.0.a1 Prupe.6G205700_v2.0.a1 Prupe.6G205800_v2.0.a1 Prupe.6G205900_v2.0.a1 Prupe.6G206300_v2.0.a1 Prupe.6G206800_v2.0.a1 Prupe.6G207100_v2.0.a1 Prupe.6G207200_v2.0.a1 Prupe.6G207300_v2.0.a1 Prupe.6G207400_v2.0.a1 Prupe.6G207500_v2.0.a1 Prupe.6G207600_v2.0.a1 Prupe.6G207700_v2.0.a1 Prupe.6G207900_v2.0.a1
pyrus_communis pycom01g06970 pycom01g06980 pycom01g06990 pycom05g02460 pycom08g00750 pycom10g13410 pycom15g27310 pycom15g27320
rosa_chinensis RchiOBHm_Chr1g0314861 RchiOBHm_Chr1g0345441 RchiOBHm_Chr1g0345451 RchiOBHm_Chr1g0345621 RchiOBHm_Chr1g0345751 RchiOBHm_Chr1g0345861 RchiOBHm_Chr1g0345871 RchiOBHm_Chr1g0345891 RchiOBHm_Chr2g0094851 RchiOBHm_Chr2g0110471 RchiOBHm_Chr2g0110511 RchiOBHm_Chr2g0110531 RchiOBHm_Chr2g0110541 RchiOBHm_Chr2g0110571 RchiOBHm_Chr5g0039381 RchiOBHm_Chr5g0039391 RchiOBHm_Chr6g0270311 RchiOBHm_Chr6g0270331 RchiOBHm_Chr6g0270411 RchiOBHm_Chr6g0270431
rosa_laevigata RLG00000000515 RLG00000013793 RLG00000013797 RLG00000013799 RLG00000016525 RLG00000017808 RLG00000017811 RLG00000017813 RLG00000017816 RLG00000017819 RLG00000017822 RLG00000017824 RLG00000017825 RLG00000028835
rosa_multiflora Rmu_co8225458.1_g000001 Rmu_sc0000389.1_g000006 Rmu_sc0000389.1_g000014 Rmu_sc0000389.1_g000023 Rmu_sc0001292.1_g000012 Rmu_sc0001292.1_g000026 Rmu_sc0002145.1_g000003 Rmu_sc0002329.1_g000033 Rmu_sc0002833.1_g000044 Rmu_sc0004316.1_g000012 Rmu_sc0004439.1_g000003 Rmu_sc0006422.1_g000028 Rmu_sc0009479.1_g000012 Rmu_sc0010489.1_g000009 Rmu_sc0010489.1_g000010 Rmu_sc0017837.1_g000003 Rmu_sc0032320.1_g000001
rosa_roxburghii Rroxscaffold_1G00050770 Rroxscaffold_2G00133110 Rroxscaffold_2G00133140 Rroxscaffold_2G00133200 Rroxscaffold_2G00133270 Rroxscaffold_2G00133290 Rroxscaffold_2G00133300 Rroxscaffold_2G00133350 Rroxscaffold_4G00292490 Rroxscaffold_4G00309020 Rroxscaffold_4G00331740 Rroxscaffold_4G00331800 Rroxscaffold_6G00404470 Rroxscaffold_7G00197950 Rroxscaffold_7G00197990 Rroxscaffold_7G00198020
rosa_rugosa Rorug01G0002500 Rorug02G0047200 Rorug02G0047300 Rorug02G0047300 Rorug02G0047400 Rorug02G0168000 Rorug02G0168000 Rorug02G0168100 Rorug02G0168100 Rorug02G0168400.1 Rorug03G0157600 Rorug03G0157700 Rorug05G0112600 Rorug06G0054600 Rorug06G0054700
rosa_samantha Rh1AG013300 Rh1AG195600 Rh1AG195700 Rh1AG196000 Rh1BG004900 Rh1BG114300 Rh2AG132300 Rh2BG095500 Rh2BG229700 Rh2BG229800 Rh2CG097400 Rh2CG221500 Rh2CG221800 Rh2CG222100 Rh2CG222200 Rh2CG222500 Rh2CG222600 Rh2CG345000 Rh5BG269700 Rh6AG172900 Rh6AG173100 Rh6CG080500 Rh6DG075900 Rh6DG164700 Rh6DG164900 Rh6DG165200 Rh6DG165300
rosa_wichuraiana Rw0G015390 Rw1G000600 Rw1G016130 Rw1G016190 Rw2G007140 Rw2G016970 Rw2G016990 Rw2G017000 Rw3G018910 Rw3G018920 Rw3G018930 Rw5G024830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 159
AciI CCGC 2 cut(s) 27, 30
AcyI GRCGYC 1 cut(s) 156
AgsI TTSAA 1 cut(s) 124
AluBI AGCT 2 cut(s) 20, 204
AluI AGCT 2 cut(s) 20, 204
Alw26I GTCTC 1 cut(s) 41
ApeKI GCWGC 1 cut(s) 71
ArsI GACNNNNNNTTYG 2 cut(s) 141, 173
AspLEI GCGC 1 cut(s) 141
AsuNHI GCTAGC 1 cut(s) 200
BbvI GCAGC 1 cut(s) 83
BccI CCATC 1 cut(s) 7
BcoDI GTCTC 1 cut(s) 41
BfaI CTAG 2 cut(s) 21, 201
BfoI RGCGCY 1 cut(s) 142
BisI GCNGC 2 cut(s) 28, 72
BlsI GCNGC 2 cut(s) 29, 73
BmtI GCTAGC 1 cut(s) 204
BsaHI GRCGYC 1 cut(s) 156
BsaJI CCNNGG 1 cut(s) 132
BseDI CCNNGG 1 cut(s) 132
BseXI GCAGC 1 cut(s) 83
BsmAI GTCTC 1 cut(s) 41
Bsp19I CCATGG 1 cut(s) 132
BspACI CCGC 2 cut(s) 27, 30
BspOI GCTAGC 1 cut(s) 204
BssECI CCNNGG 1 cut(s) 132
BssNI GRCGYC 1 cut(s) 156
BssT1I CCWWGG 1 cut(s) 132
Bst4CI ACNGT 1 cut(s) 167
BstACI GRCGYC 1 cut(s) 156
BstC8I GCNNGC 1 cut(s) 202
BstDSI CCRYGG 1 cut(s) 132
BstH2I RGCGCY 1 cut(s) 142
BstHHI GCGC 1 cut(s) 141
BstMAI GTCTC 1 cut(s) 41
BstV1I GCAGC 1 cut(s) 83
BtgI CCRYGG 1 cut(s) 132
BtsI GCAGTG 1 cut(s) 126
BtsIMutI CAGTG 2 cut(s) 126, 191
Cac8I GCNNGC 1 cut(s) 202
CfoI GCGC 1 cut(s) 141
CviAII CATG 1 cut(s) 133
CviJI RGCY 4 cut(s) 20, 74, 200, 204
CviKI_1 RGCY 4 cut(s) 20, 74, 200, 204
Eco130I CCWWGG 1 cut(s) 132
EcoT14I CCWWGG 1 cut(s) 132
ErhI CCWWGG 1 cut(s) 132
FaeI CATG 1 cut(s) 136
FaiI YATR 3 cut(s) 41, 86, 134
FatI CATG 1 cut(s) 132
Fnu4HI GCNGC 2 cut(s) 28, 72
Fsp4HI GCNGC 2 cut(s) 28, 72
FspBI CTAG 2 cut(s) 21, 201
GlaI GCGC 1 cut(s) 140
GluI GCNGC 2 cut(s) 28, 72
HaeII RGCGCY 1 cut(s) 142
HhaI GCGC 1 cut(s) 141
Hin1I GRCGYC 1 cut(s) 156
Hin1II CATG 1 cut(s) 136
Hin6I GCGC 1 cut(s) 139
HinP1I GCGC 1 cut(s) 139
Hpy166II GTNNAC 1 cut(s) 35
Hpy188I TCNGA 1 cut(s) 161
Hpy8I GTNNAC 1 cut(s) 35
HpyAV CCTTC 2 cut(s) 37, 190
HpyCH4III ACNGT 1 cut(s) 167
HpyCH4IV ACGT 2 cut(s) 37, 156
HpyCH4V TGCA 1 cut(s) 71
HpySE526I ACGT 2 cut(s) 37, 156
Hsp92I GRCGYC 1 cut(s) 156
Hsp92II CATG 1 cut(s) 136
HspAI GCGC 1 cut(s) 139
LmnI GCTCC 1 cut(s) 136
Lsp1109I GCAGC 1 cut(s) 83
MaeI CTAG 2 cut(s) 21, 201
MaeII ACGT 2 cut(s) 37, 156
MboII GAAGA 1 cut(s) 22
MfeI CAATTG 1 cut(s) 111
MluCI AATT 1 cut(s) 111
MnlI CCTC 1 cut(s) 94
MseI TTAA 1 cut(s) 208
MslI CAYNNNNRTG 1 cut(s) 131
MunI CAATTG 1 cut(s) 111
NcoI CCATGG 1 cut(s) 132
NheI GCTAGC 1 cut(s) 200
NlaIII CATG 1 cut(s) 136
PkrI GCNGC 2 cut(s) 29, 73
RseI CAYNNNNRTG 1 cut(s) 131
SaqAI TTAA 1 cut(s) 208
SatI GCNGC 2 cut(s) 28, 72
SetI ASST 5 cut(s) 22, 40, 105, 159, 206
SgeI CNNG 7 cut(s) 33, 65, 88, 112, 133, 145, 155
SmiMI CAYNNNNRTG 1 cut(s) 131
Sse9I AATT 1 cut(s) 111
SsiI CCGC 2 cut(s) 27, 30
SspMI CTAG 2 cut(s) 21, 201
StyI CCWWGG 1 cut(s) 132
TaaI ACNGT 1 cut(s) 167
TaiI ACGT 2 cut(s) 40, 159
TaqI TCGA 1 cut(s) 99
TasI AATT 1 cut(s) 111
TauI GCSGC 1 cut(s) 30
Tru1I TTAA 1 cut(s) 208
Tru9I TTAA 1 cut(s) 208
TscAI CASTG 2 cut(s) 133, 198
TseI GCWGC 1 cut(s) 71
TspDTI ATGAA 1 cut(s) 56
TspRI CASTG 2 cut(s) 133, 198
XspI CTAG 2 cut(s) 21, 201
ZraI GACGTC 1 cut(s) 157
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.