Rroxscaffold_4G00331800

Dehydrogenase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000167
Physical Location & Seq
Forward (+)
65810707 .. 65813501
2795 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00331800.1

Sequence Viewer

Length: 801 bp
ATGGTCACGAAGCACTACACCAAAACTGATTGCGATATTGGGTGGACTTGGAGGGAATCCGGAGAGAGAGACGTGACATTCAAGGTGTTGTACTGTGGGATTTGCCATTCGGACCTTCACATGGTCAAGAATGAATGGGGCTTCTCTACCTATCCTCTGGTTCCCGGGCATGAGATTGTCGGTGAAGTGACGGAAGTAGGGAGCAATGTACAAAAATTCAAAATTGGAGACAAAGTCGGTGTTGGAGGCATAGTGGGAGCTTGCCGATCTTGTGATAGTTGTACCGACCATCTTGAGAACTACTGCCCCAAACTAATACTCACGTACAGTGCCAAGTACTATGACGGAACCACCACCTATGGCGGTTACTCTGACATTATGGTTGCAGATGAACACTTCGTAGTCAGTATCCCGGACAACCTACCCCTTGATTGTGCTGCTCCCTCTCCTATGTGCCGGAATCACAACCTACAGCCCGTTGAGGCTGCCATTGGTACCATGGATGGGATCATTGACACGGTTTCTGCACAACATCCTCTCTTGCCTTTGATTGTTTTGTTGAAGTCTCATGGAAAGCTTGTTATGGTTGGAGCACCGGAAAAGCCTCTTGAGCTTCCGGTTTTCCTTTACTCATGGATGGTAGCTAGTAGCGGCGGTGGAGGTATGAAGGAGACACGAGAGATGATCGATTTTGCAGCCAAGCACAACATAACAGCGGACATCGAGGTTATCCCAATTGACTACTTGAACACGCCATGGAGCGCCTTGCCAAAGCGGACGTCGATACCGTTTTGTTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
ADH_N ADH_zinc_N

Protein Analysis

266

Amino Acids

29.28

Weight (kDa)

5.41

Isoelectric Point (pI)

33.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ADH_N PF08240 22 - 139 4e-27 Alcohol dehydrogenase GroES-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000167)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G37980 AT4G37980 AT4G37990
fragaria_vesca FvH4_1g19210 FvH4_1g19220 FvH4_1g19240 FvH4_1g19240 FvH4_1g19261 FvH4_1g19262 FvH4_1g19263 FvH4_1g19263 FvH4_1g19265 FvH4_1g19281 FvH4_1g19281 FvH4_7g07240 FvH4_7g07240 FvH4_7g07240
malus_domestica MD01G1042500.v1.1 MD01G1042600.v1.1 MD01G1042800.v1.1 MD01G1042900.v1.1 MD05G1034100.v1.1 MD10G1035900.v1.1 MD10G1036000.v1.1 MD10G1155000.v1.1 MD10G1155100.v1.1 MD10G1155200.v1.1 MD10G1155400.v1.1 MD10G1155700.v1.1 MD10G1155800.v1.1 MD15G1308800.v1.1 MD15G1308900.v1.1
prunus_persica Prupe.6G205600_v2.0.a1 Prupe.6G205700_v2.0.a1 Prupe.6G205800_v2.0.a1 Prupe.6G205900_v2.0.a1 Prupe.6G206300_v2.0.a1 Prupe.6G206800_v2.0.a1 Prupe.6G207100_v2.0.a1 Prupe.6G207200_v2.0.a1 Prupe.6G207300_v2.0.a1 Prupe.6G207400_v2.0.a1 Prupe.6G207500_v2.0.a1 Prupe.6G207600_v2.0.a1 Prupe.6G207700_v2.0.a1 Prupe.6G207900_v2.0.a1
pyrus_communis pycom01g06970 pycom01g06980 pycom01g06990 pycom05g02460 pycom08g00750 pycom10g13410 pycom15g27310 pycom15g27320
rosa_chinensis RchiOBHm_Chr1g0314861 RchiOBHm_Chr1g0345441 RchiOBHm_Chr1g0345451 RchiOBHm_Chr1g0345621 RchiOBHm_Chr1g0345751 RchiOBHm_Chr1g0345861 RchiOBHm_Chr1g0345871 RchiOBHm_Chr1g0345891 RchiOBHm_Chr2g0094851 RchiOBHm_Chr2g0110471 RchiOBHm_Chr2g0110511 RchiOBHm_Chr2g0110531 RchiOBHm_Chr2g0110541 RchiOBHm_Chr2g0110571 RchiOBHm_Chr5g0039381 RchiOBHm_Chr5g0039391 RchiOBHm_Chr6g0270311 RchiOBHm_Chr6g0270331 RchiOBHm_Chr6g0270411 RchiOBHm_Chr6g0270431
rosa_laevigata RLG00000000515 RLG00000013793 RLG00000013797 RLG00000013799 RLG00000016525 RLG00000017808 RLG00000017811 RLG00000017813 RLG00000017816 RLG00000017819 RLG00000017822 RLG00000017824 RLG00000017825 RLG00000028835
rosa_multiflora Rmu_co8225458.1_g000001 Rmu_sc0000389.1_g000006 Rmu_sc0000389.1_g000014 Rmu_sc0000389.1_g000023 Rmu_sc0001292.1_g000012 Rmu_sc0001292.1_g000026 Rmu_sc0002145.1_g000003 Rmu_sc0002329.1_g000033 Rmu_sc0002833.1_g000044 Rmu_sc0004316.1_g000012 Rmu_sc0004439.1_g000003 Rmu_sc0006422.1_g000028 Rmu_sc0009479.1_g000012 Rmu_sc0010489.1_g000009 Rmu_sc0010489.1_g000010 Rmu_sc0017837.1_g000003 Rmu_sc0032320.1_g000001
rosa_roxburghii Rroxscaffold_1G00050770 Rroxscaffold_2G00133110 Rroxscaffold_2G00133140 Rroxscaffold_2G00133200 Rroxscaffold_2G00133270 Rroxscaffold_2G00133290 Rroxscaffold_2G00133300 Rroxscaffold_2G00133350 Rroxscaffold_4G00292490 Rroxscaffold_4G00309020 Rroxscaffold_4G00331740 Rroxscaffold_4G00331800 Rroxscaffold_6G00404470 Rroxscaffold_7G00197950 Rroxscaffold_7G00197990 Rroxscaffold_7G00198020
rosa_rugosa Rorug01G0002500 Rorug02G0047200 Rorug02G0047300 Rorug02G0047300 Rorug02G0047400 Rorug02G0168000 Rorug02G0168000 Rorug02G0168100 Rorug02G0168100 Rorug02G0168400.1 Rorug03G0157600 Rorug03G0157700 Rorug05G0112600 Rorug06G0054600 Rorug06G0054700
rosa_samantha Rh1AG013300 Rh1AG195600 Rh1AG195700 Rh1AG196000 Rh1BG004900 Rh1BG114300 Rh2AG132300 Rh2BG095500 Rh2BG229700 Rh2BG229800 Rh2CG097400 Rh2CG221500 Rh2CG221800 Rh2CG222100 Rh2CG222200 Rh2CG222500 Rh2CG222600 Rh2CG345000 Rh5BG269700 Rh6AG172900 Rh6AG173100 Rh6CG080500 Rh6DG075900 Rh6DG164700 Rh6DG164900 Rh6DG165200 Rh6DG165300
rosa_wichuraiana Rw0G015390 Rw1G000600 Rw1G016130 Rw1G016190 Rw2G007140 Rw2G016970 Rw2G016990 Rw2G017000 Rw3G018910 Rw3G018920 Rw3G018930 Rw5G024830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 782
Acc65I GGTACC 1 cut(s) 494
AccB1I GGYRCC 1 cut(s) 494
AccIII TCCGGA 1 cut(s) 59
AciI CCGC 5 cut(s) 363, 651, 654, 716, 775
AclWI GGATC 1 cut(s) 515
AcsI RAATTY 1 cut(s) 215
AcyI GRCGYC 1 cut(s) 779
AfaI GTAC 6 cut(s) 92, 210, 283, 326, 338, 496
AfiI CCNNNNNNNGG 2 cut(s) 121, 504
AgsI TTSAA 4 cut(s) 82, 220, 562, 748
AjiI CACGTC 1 cut(s) 73
AluBI AGCT 4 cut(s) 260, 577, 613, 644
AluI AGCT 4 cut(s) 260, 577, 613, 644
Alw21I GWGCWC 1 cut(s) 595
Alw26I GTCTC 4 cut(s) 63, 222, 570, 665
AlwI GGATC 1 cut(s) 515
Ama87I CYCGRG 1 cut(s) 164
Aor13HI TCCGGA 1 cut(s) 59
ApeKI GCWGC 3 cut(s) 437, 485, 695
ApoI RAATTY 1 cut(s) 215
ArsI GACNNNNNNTTYG 2 cut(s) 764, 796
Asp718I GGTACC 1 cut(s) 494
AspLEI GCGC 1 cut(s) 764
AspS9I GGNCC 1 cut(s) 112
AsuC2I CCSGG 3 cut(s) 165, 166, 413
AsuHPI GGTGA 1 cut(s) 194
AvaI CYCGRG 1 cut(s) 164
AvaII GGWCC 1 cut(s) 112
BanI GGYRCC 1 cut(s) 494
BauI CACGAG 1 cut(s) 675
Bbv12I GWGCWC 1 cut(s) 595
BbvI GCAGC 3 cut(s) 424, 472, 707
BccI CCATC 3 cut(s) 297, 497, 631
BciVI GTATCC 1 cut(s) 419
BcnI CCSGG 3 cut(s) 165, 166, 413
BcoDI GTCTC 4 cut(s) 63, 222, 570, 665
BfaI CTAG 1 cut(s) 645
BfmI CTRYAG 1 cut(s) 470
BfoI RGCGCY 1 cut(s) 765
BfuI GTATCC 1 cut(s) 419
BisI GCNGC 4 cut(s) 438, 486, 652, 696
BlsI GCNGC 4 cut(s) 439, 487, 653, 697
BmcAI AGTACT 1 cut(s) 338
Bme1390I CCNGG 3 cut(s) 165, 166, 413
Bme18I GGWCC 1 cut(s) 112
BmeT110I CYCGRG 1 cut(s) 164
BmgBI CACGTC 1 cut(s) 73
BmgT120I GGNCC 1 cut(s) 112
BmiI GGNNCC 3 cut(s) 162, 349, 496
BmrFI CCNGG 3 cut(s) 165, 166, 413
BpuEI CTTGAG 2 cut(s) 314, 629
BpuMI CCSGG 3 cut(s) 165, 166, 413
Bsa29I ATCGAT 1 cut(s) 687
BsaAI YACGTR 1 cut(s) 324
BsaHI GRCGYC 1 cut(s) 779
BsaJI CCNNGG 3 cut(s) 164, 498, 755
BsaWI WCCGGW 3 cut(s) 59, 595, 616
BsaXI ACNNNNNCTCC 4 cut(s) 219, 237, 249, 267
Bsc4I CCNNNNNNNGG 2 cut(s) 121, 504
Bse3DI GCAATG 1 cut(s) 211
BseAI TCCGGA 1 cut(s) 59
BseCI ATCGAT 1 cut(s) 687
BseDI CCNNGG 3 cut(s) 164, 498, 755
BseGI GGATG 3 cut(s) 508, 532, 642
BseLI CCNNNNNNNGG 2 cut(s) 121, 504
BseMI GCAATG 1 cut(s) 211
BseXI GCAGC 3 cut(s) 424, 472, 707
BsgI GTGCAG 1 cut(s) 510
BshNI GGYRCC 1 cut(s) 494
BshVI ATCGAT 1 cut(s) 687
BsiHKAI GWGCWC 1 cut(s) 595
BsiHKCI CYCGRG 1 cut(s) 164
BsiSI CCGG 6 cut(s) 60, 165, 413, 457, 596, 617
BslI CCNNNNNNNGG 2 cut(s) 121, 504
BsmAI GTCTC 4 cut(s) 63, 222, 570, 665
BsmBI CGTCTC 1 cut(s) 63
BsoBI CYCGRG 1 cut(s) 164
Bsp1286I GDGCHC 1 cut(s) 595
Bsp13I TCCGGA 1 cut(s) 59
Bsp1407I TGTACA 1 cut(s) 208
Bsp143I GATC 3 cut(s) 266, 507, 684
Bsp19I CCATGG 2 cut(s) 498, 755
BspACI CCGC 5 cut(s) 363, 651, 654, 716, 775
BspDI ATCGAT 1 cut(s) 687
BspEI TCCGGA 1 cut(s) 59
BspLI GGNNCC 3 cut(s) 162, 349, 496
BspPI GGATC 1 cut(s) 515
BspT107I GGYRCC 1 cut(s) 494
BsrDI GCAATG 1 cut(s) 211
BsrGI TGTACA 1 cut(s) 208
BssECI CCNNGG 3 cut(s) 164, 498, 755
BssMI GATC 3 cut(s) 266, 507, 684
BssNI GRCGYC 1 cut(s) 779
BssSI CACGAG 1 cut(s) 675
BssT1I CCWWGG 2 cut(s) 498, 755
Bst2BI CACGAG 1 cut(s) 675
Bst4CI ACNGT 4 cut(s) 95, 329, 520, 789
BstACI GRCGYC 1 cut(s) 779
BstAUI TGTACA 1 cut(s) 208
BstBAI YACGTR 1 cut(s) 324
BstC8I GCNNGC 1 cut(s) 262
BstDSI CCRYGG 2 cut(s) 498, 755
BstF5I GGATG 3 cut(s) 508, 532, 642
BstH2I RGCGCY 1 cut(s) 765
BstHHI GCGC 1 cut(s) 764
BstKTI GATC 3 cut(s) 269, 510, 687
BstMAI GTCTC 4 cut(s) 63, 222, 570, 665
BstMBI GATC 3 cut(s) 266, 507, 684
BstMWI GCNNNNNNNGC 1 cut(s) 610
BstSCI CCNGG 3 cut(s) 163, 164, 411
BstSFI CTRYAG 1 cut(s) 470
BstV1I GCAGC 3 cut(s) 424, 472, 707
Bsu15I ATCGAT 1 cut(s) 687
BsuI GTATCC 1 cut(s) 419
BsuTUI ATCGAT 1 cut(s) 687
BtgI CCRYGG 2 cut(s) 498, 755
BtrI CACGTC 1 cut(s) 73
BtsCI GGATG 3 cut(s) 508, 532, 642
BtsIMutI CAGTG 1 cut(s) 334
Cac8I GCNNGC 1 cut(s) 262
CfoI GCGC 1 cut(s) 764
Cfr13I GGNCC 1 cut(s) 112
Cfr9I CCCGGG 1 cut(s) 164
ClaI ATCGAT 1 cut(s) 687
Csp6I GTAC 6 cut(s) 91, 209, 282, 325, 337, 495
CviAII CATG 6 cut(s) 121, 170, 499, 569, 633, 756
CviJI RGCY 9 cut(s) 141, 260, 475, 485, 577, 604, 613, 644, 698
CviKI_1 RGCY 9 cut(s) 141, 260, 475, 485, 577, 604, 613, 644, 698
CviQI GTAC 6 cut(s) 91, 209, 282, 325, 337, 495
DpnI GATC 3 cut(s) 268, 509, 686
DpnII GATC 3 cut(s) 266, 507, 684
Eco130I CCWWGG 2 cut(s) 498, 755
Eco47I GGWCC 1 cut(s) 112
Eco88I CYCGRG 1 cut(s) 164
EcoT14I CCWWGG 2 cut(s) 498, 755
ErhI CCWWGG 2 cut(s) 498, 755
Esp3I CGTCTC 1 cut(s) 63
FaeI CATG 6 cut(s) 124, 173, 502, 572, 636, 759
FatI CATG 6 cut(s) 120, 169, 498, 568, 632, 755
Fnu4HI GCNGC 4 cut(s) 438, 486, 652, 696
FokI GGATG 3 cut(s) 515, 519, 649
Fsp4HI GCNGC 4 cut(s) 438, 486, 652, 696
FspBI CTAG 1 cut(s) 645
GlaI GCGC 1 cut(s) 763
GluI GCNGC 4 cut(s) 438, 486, 652, 696
HaeII RGCGCY 1 cut(s) 765
HapII CCGG 6 cut(s) 60, 165, 413, 457, 596, 617
HhaI GCGC 1 cut(s) 764
Hin1I GRCGYC 1 cut(s) 779
Hin1II CATG 6 cut(s) 124, 173, 502, 572, 636, 759
Hin6I GCGC 1 cut(s) 762
HinP1I GCGC 1 cut(s) 762
HindIII AAGCTT 1 cut(s) 575
HinfI GANTC 2 cut(s) 56, 460
HpaII CCGG 6 cut(s) 60, 165, 413, 457, 596, 617
HphI GGTGA 1 cut(s) 194
Hpy166II GTNNAC 1 cut(s) 45
Hpy188I TCNGA 2 cut(s) 112, 373
Hpy188III TCNNGA 5 cut(s) 7, 60, 127, 293, 608
Hpy8I GTNNAC 1 cut(s) 45
Hpy99I CGWCG 1 cut(s) 784
HpyAV CCTTC 2 cut(s) 125, 661
HpyCH4III ACNGT 4 cut(s) 95, 329, 520, 789
HpyCH4IV ACGT 3 cut(s) 72, 323, 779
HpyCH4V TGCA 3 cut(s) 386, 527, 695
HpyF10VI GCNNNNNNNGC 1 cut(s) 610
HpySE526I ACGT 3 cut(s) 72, 323, 779
Hsp92I GRCGYC 1 cut(s) 779
Hsp92II CATG 6 cut(s) 124, 173, 502, 572, 636, 759
HspAI GCGC 1 cut(s) 762
Kpn2I TCCGGA 1 cut(s) 59
KpnI GGTACC 1 cut(s) 498
Kzo9I GATC 3 cut(s) 266, 507, 684
LmnI GCTCC 5 cut(s) 201, 257, 445, 590, 759
LpnPI CCDG 7 cut(s) 73, 143, 178, 426, 470, 609, 630
Lsp1109I GCAGC 3 cut(s) 424, 472, 707
MaeI CTAG 1 cut(s) 645
MaeII ACGT 3 cut(s) 72, 323, 779
MaeIII GTNAC 4 cut(s) 4, 73, 187, 365
MalI GATC 3 cut(s) 268, 509, 686
MboI GATC 3 cut(s) 266, 507, 684
MfeI CAATTG 1 cut(s) 735
MhlI GDGCHC 1 cut(s) 595
MluCI AATT 3 cut(s) 215, 222, 735
MmeI TCCRAC 2 cut(s) 223, 568
MnlI CCTC 9 cut(s) 45, 165, 239, 454, 475, 546, 615, 653, 718
MroI TCCGGA 1 cut(s) 59
MspA1I CMGCKG 1 cut(s) 716
MspI CCGG 6 cut(s) 60, 165, 413, 457, 596, 617
MspR9I CCNGG 3 cut(s) 165, 166, 413
MunI CAATTG 1 cut(s) 735
MwoI GCNNNNNNNGC 1 cut(s) 610
NciI CCSGG 3 cut(s) 165, 166, 413
NcoI CCATGG 2 cut(s) 498, 755
NdeII GATC 3 cut(s) 266, 507, 684
NlaIII CATG 6 cut(s) 124, 173, 502, 572, 636, 759
NlaIV GGNNCC 3 cut(s) 162, 349, 496
NmuCI GTSAC 3 cut(s) 4, 73, 187
PcsI WCGNNNNNNNCGW 1 cut(s) 785
PfeI GAWTC 2 cut(s) 56, 460
PflFI GACNNNGTC 1 cut(s) 233
PfoI TCCNGGA 1 cut(s) 411
PkrI GCNGC 4 cut(s) 439, 487, 653, 697
Ppu21I YACGTR 1 cut(s) 324
PspN4I GGNNCC 3 cut(s) 162, 349, 496
PspPI GGNCC 1 cut(s) 112
PsyI GACNNNGTC 1 cut(s) 233
RsaI GTAC 6 cut(s) 92, 210, 283, 326, 338, 496
RsaNI GTAC 6 cut(s) 91, 209, 282, 325, 337, 495
SatI GCNGC 4 cut(s) 438, 486, 652, 696
Sau3AI GATC 3 cut(s) 266, 507, 684
Sau96I GGNCC 1 cut(s) 112
ScaI AGTACT 1 cut(s) 338
ScrFI CCNGG 3 cut(s) 165, 166, 413
SduI GDGCHC 1 cut(s) 595
SfcI CTRYAG 1 cut(s) 470
SinI GGWCC 1 cut(s) 112
SmaI CCCGGG 1 cut(s) 166
SmlI CTYRAG 2 cut(s) 293, 608
SmoI CTYRAG 2 cut(s) 293, 608
Sse9I AATT 3 cut(s) 215, 222, 735
SsiI CCGC 5 cut(s) 363, 651, 654, 716, 775
SspMI CTAG 1 cut(s) 645
StyD4I CCNGG 3 cut(s) 163, 164, 411
StyI CCWWGG 2 cut(s) 498, 755
TaaI ACNGT 4 cut(s) 95, 329, 520, 789
TaiI ACGT 3 cut(s) 75, 326, 782
TaqI TCGA 3 cut(s) 687, 723, 782
TasI AATT 3 cut(s) 215, 222, 735
TatI WGTACW 3 cut(s) 90, 208, 336
TauI GCSGC 1 cut(s) 654
TfiI GAWTC 2 cut(s) 56, 460
TscAI CASTG 1 cut(s) 334
TseFI GTSAC 3 cut(s) 4, 73, 187
TseI GCWGC 3 cut(s) 437, 485, 695
Tsp45I GTSAC 3 cut(s) 4, 73, 187
TspDTI ATGAA 3 cut(s) 147, 405, 680
TspGWI ACGGA 2 cut(s) 206, 360
TspMI CCCGGG 1 cut(s) 164
TspRI CASTG 1 cut(s) 334
Tth111I GACNNNGTC 1 cut(s) 233
VpaK11BI GGWCC 1 cut(s) 112
XapI RAATTY 1 cut(s) 215
XcmI CCANNNNNNNNNTGG 1 cut(s) 496
XmaI CCCGGG 1 cut(s) 164
XspI CTAG 1 cut(s) 645
ZraI GACGTC 1 cut(s) 780
ZrmI AGTACT 1 cut(s) 338
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.