Rh2CG345000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0000167
Physical Location & Seq
Forward (+)
46474487 .. 46474997
511 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG345000.1

Sequence Viewer

Length: 396 bp
ATGTCAGCTGCTGACATGTTACCACGTCTAGAGGAGACGGCGGCACAACGCCATCTCCGTCAAGACCATCATGTTGGAACCTGCTCTCTCAACGGCACGACGCTTCGAATGGTCTCTCTCAAGGTGGAACTTGCTCTTGCAAGGGATGTATTTCTAGATAGCATCAGTGGGGTTGACGTAGAAGACCAATTGGTCCTGGAAGATGTTGAGGACGATCACGATGAAGCCGTCAATGCAGCTGAAGGTGAAGTTGCATGTCCAAAGGCGGTGGGAGGAGGTGAAGAGGAAAGGGAGAGTGAAGATCAGAGAGTGGGTGGGAGTGCCTATGGCTGGGGATGGGAATGGGAGAATGATGAGAAGTTCGATGGCAAAGATTTGTGTTCATCGATGAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

131

Amino Acids

14.42

Weight (kDa)

4.3

Isoelectric Point (pI)

38.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000167)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G37980 AT4G37980 AT4G37990
fragaria_vesca FvH4_1g19210 FvH4_1g19220 FvH4_1g19240 FvH4_1g19240 FvH4_1g19261 FvH4_1g19262 FvH4_1g19263 FvH4_1g19263 FvH4_1g19265 FvH4_1g19281 FvH4_1g19281 FvH4_7g07240 FvH4_7g07240 FvH4_7g07240
malus_domestica MD01G1042500.v1.1 MD01G1042600.v1.1 MD01G1042800.v1.1 MD01G1042900.v1.1 MD05G1034100.v1.1 MD10G1035900.v1.1 MD10G1036000.v1.1 MD10G1155000.v1.1 MD10G1155100.v1.1 MD10G1155200.v1.1 MD10G1155400.v1.1 MD10G1155700.v1.1 MD10G1155800.v1.1 MD15G1308800.v1.1 MD15G1308900.v1.1
prunus_persica Prupe.6G205600_v2.0.a1 Prupe.6G205700_v2.0.a1 Prupe.6G205800_v2.0.a1 Prupe.6G205900_v2.0.a1 Prupe.6G206300_v2.0.a1 Prupe.6G206800_v2.0.a1 Prupe.6G207100_v2.0.a1 Prupe.6G207200_v2.0.a1 Prupe.6G207300_v2.0.a1 Prupe.6G207400_v2.0.a1 Prupe.6G207500_v2.0.a1 Prupe.6G207600_v2.0.a1 Prupe.6G207700_v2.0.a1 Prupe.6G207900_v2.0.a1
pyrus_communis pycom01g06970 pycom01g06980 pycom01g06990 pycom05g02460 pycom08g00750 pycom10g13410 pycom15g27310 pycom15g27320
rosa_chinensis RchiOBHm_Chr1g0314861 RchiOBHm_Chr1g0345441 RchiOBHm_Chr1g0345451 RchiOBHm_Chr1g0345621 RchiOBHm_Chr1g0345751 RchiOBHm_Chr1g0345861 RchiOBHm_Chr1g0345871 RchiOBHm_Chr1g0345891 RchiOBHm_Chr2g0094851 RchiOBHm_Chr2g0110471 RchiOBHm_Chr2g0110511 RchiOBHm_Chr2g0110531 RchiOBHm_Chr2g0110541 RchiOBHm_Chr2g0110571 RchiOBHm_Chr5g0039381 RchiOBHm_Chr5g0039391 RchiOBHm_Chr6g0270311 RchiOBHm_Chr6g0270331 RchiOBHm_Chr6g0270411 RchiOBHm_Chr6g0270431
rosa_laevigata RLG00000000515 RLG00000013793 RLG00000013797 RLG00000013799 RLG00000016525 RLG00000017808 RLG00000017811 RLG00000017813 RLG00000017816 RLG00000017819 RLG00000017822 RLG00000017824 RLG00000017825 RLG00000028835
rosa_multiflora Rmu_co8225458.1_g000001 Rmu_sc0000389.1_g000006 Rmu_sc0000389.1_g000014 Rmu_sc0000389.1_g000023 Rmu_sc0001292.1_g000012 Rmu_sc0001292.1_g000026 Rmu_sc0002145.1_g000003 Rmu_sc0002329.1_g000033 Rmu_sc0002833.1_g000044 Rmu_sc0004316.1_g000012 Rmu_sc0004439.1_g000003 Rmu_sc0006422.1_g000028 Rmu_sc0009479.1_g000012 Rmu_sc0010489.1_g000009 Rmu_sc0010489.1_g000010 Rmu_sc0017837.1_g000003 Rmu_sc0032320.1_g000001
rosa_roxburghii Rroxscaffold_1G00050770 Rroxscaffold_2G00133110 Rroxscaffold_2G00133140 Rroxscaffold_2G00133200 Rroxscaffold_2G00133270 Rroxscaffold_2G00133290 Rroxscaffold_2G00133300 Rroxscaffold_2G00133350 Rroxscaffold_4G00292490 Rroxscaffold_4G00309020 Rroxscaffold_4G00331740 Rroxscaffold_4G00331800 Rroxscaffold_6G00404470 Rroxscaffold_7G00197950 Rroxscaffold_7G00197990 Rroxscaffold_7G00198020
rosa_rugosa Rorug01G0002500 Rorug02G0047200 Rorug02G0047300 Rorug02G0047300 Rorug02G0047400 Rorug02G0168000 Rorug02G0168000 Rorug02G0168100 Rorug02G0168100 Rorug02G0168400.1 Rorug03G0157600 Rorug03G0157700 Rorug05G0112600 Rorug06G0054600 Rorug06G0054700
rosa_samantha Rh1AG013300 Rh1AG195600 Rh1AG195700 Rh1AG196000 Rh1BG004900 Rh1BG114300 Rh2AG132300 Rh2BG095500 Rh2BG229700 Rh2BG229800 Rh2CG097400 Rh2CG221500 Rh2CG221800 Rh2CG222100 Rh2CG222200 Rh2CG222500 Rh2CG222600 Rh2CG345000 Rh5BG269700 Rh6AG172900 Rh6AG173100 Rh6CG080500 Rh6DG075900 Rh6DG164700 Rh6DG164900 Rh6DG165200 Rh6DG165300
rosa_wichuraiana Rw0G015390 Rw1G000600 Rw1G016130 Rw1G016190 Rw2G007140 Rw2G016970 Rw2G016990 Rw2G017000 Rw3G018910 Rw3G018920 Rw3G018930 Rw5G024830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 191
Acc36I ACCTGC 1 cut(s) 89
AciI CCGC 2 cut(s) 41, 266
AcuI CTGAAG 1 cut(s) 261
AfiI CCNNNNNNNGG 1 cut(s) 330
AflIII ACRYGT 1 cut(s) 15
AjiI CACGTC 1 cut(s) 26
AjnI CCWGG 1 cut(s) 195
AluBI AGCT 2 cut(s) 8, 239
AluI AGCT 2 cut(s) 8, 239
Alw26I GTCTC 2 cut(s) 29, 118
AlwNI CAGNNNCTG 1 cut(s) 11
ApeKI GCWGC 2 cut(s) 8, 236
AspS9I GGNCC 1 cut(s) 193
AsuHPI GGTGA 2 cut(s) 257, 290
AsuII TTCGAA 1 cut(s) 106
AvaII GGWCC 1 cut(s) 193
BbsI GAAGAC 1 cut(s) 189
BbvI GCAGC 1 cut(s) 248
BccI CCATC 4 cut(s) 60, 75, 330, 359
BceAI ACGGC 3 cut(s) 54, 109, 212
BciT130I CCWGG 1 cut(s) 197
BcoDI GTCTC 2 cut(s) 29, 118
BfaI CTAG 2 cut(s) 29, 155
BfuAI ACCTGC 1 cut(s) 89
BisI GCNGC 3 cut(s) 9, 42, 237
BlsI GCNGC 3 cut(s) 10, 43, 238
Bme1390I CCNGG 1 cut(s) 197
Bme18I GGWCC 1 cut(s) 193
BmgBI CACGTC 1 cut(s) 26
BmgT120I GGNCC 1 cut(s) 193
BmiI GGNNCC 1 cut(s) 79
BmrFI CCNGG 1 cut(s) 197
BmsI GCATC 1 cut(s) 171
BpiI GAAGAC 1 cut(s) 189
Bpu14I TTCGAA 1 cut(s) 106
BpuEI CTTGAG 1 cut(s) 104
Bsa29I ATCGAT 1 cut(s) 386
BsaI GGTCTC 1 cut(s) 118
BsaXI ACNNNNNCTCC 2 cut(s) 39, 69
Bsc4I CCNNNNNNNGG 1 cut(s) 330
BseBI CCWGG 1 cut(s) 197
BseCI ATCGAT 1 cut(s) 386
BseGI GGATG 2 cut(s) 151, 341
BseLI CCNNNNNNNGG 1 cut(s) 330
BseRI GAGGAG 2 cut(s) 47, 288
BseXI GCAGC 1 cut(s) 248
BseYI CCCAGC 1 cut(s) 330
BshVI ATCGAT 1 cut(s) 386
BslI CCNNNNNNNGG 1 cut(s) 330
BsmAI GTCTC 2 cut(s) 29, 118
BsmBI CGTCTC 1 cut(s) 29
Bso31I GGTCTC 1 cut(s) 118
Bsp119I TTCGAA 1 cut(s) 106
Bsp143I GATC 2 cut(s) 214, 301
BspACI CCGC 2 cut(s) 41, 266
BspDI ATCGAT 1 cut(s) 386
BspLI GGNNCC 1 cut(s) 79
BspMI ACCTGC 1 cut(s) 89
BspT104I TTCGAA 1 cut(s) 106
BspTNI GGTCTC 1 cut(s) 118
BssMI GATC 2 cut(s) 214, 301
Bst2UI CCWGG 1 cut(s) 197
Bst6I CTCTTC 1 cut(s) 276
BstBI TTCGAA 1 cut(s) 106
BstF5I GGATG 2 cut(s) 151, 341
BstKTI GATC 2 cut(s) 217, 304
BstMAI GTCTC 2 cut(s) 29, 118
BstMBI GATC 2 cut(s) 214, 301
BstMWI GCNNNNNNNGC 1 cut(s) 233
BstNI CCWGG 1 cut(s) 197
BstNSI RCATGY 2 cut(s) 19, 258
BstSCI CCNGG 1 cut(s) 195
BstV1I GCAGC 1 cut(s) 248
BstV2I GAAGAC 1 cut(s) 189
BstXI CCANNNNNNTGG 1 cut(s) 74
Bsu15I ATCGAT 1 cut(s) 386
BsuTUI ATCGAT 1 cut(s) 386
BtrI CACGTC 1 cut(s) 26
BtsCI GGATG 2 cut(s) 151, 341
BtsIMutI CAGTG 1 cut(s) 172
BveI ACCTGC 1 cut(s) 89
CaiI CAGNNNCTG 1 cut(s) 11
Cfr13I GGNCC 1 cut(s) 193
ClaI ATCGAT 1 cut(s) 386
CseI GACGC 1 cut(s) 109
CspCI CAANNNNNGTGG 2 cut(s) 249, 284
CviAII CATG 3 cut(s) 16, 71, 255
CviJI RGCY 4 cut(s) 8, 227, 239, 330
CviKI_1 RGCY 4 cut(s) 8, 227, 239, 330
DpnI GATC 2 cut(s) 216, 303
DpnII GATC 2 cut(s) 214, 301
DrdI GACNNNNNNGTC 1 cut(s) 191
DseDI GACNNNNNNGTC 1 cut(s) 191
Eam1104I CTCTTC 1 cut(s) 276
EarI CTCTTC 1 cut(s) 276
Eco31I GGTCTC 1 cut(s) 118
Eco47I GGWCC 1 cut(s) 193
Eco57I CTGAAG 1 cut(s) 261
EcoRII CCWGG 1 cut(s) 195
Esp3I CGTCTC 1 cut(s) 29
FaeI CATG 3 cut(s) 19, 74, 258
FaiI YATR 4 cut(s) 17, 72, 256, 327
FatI CATG 3 cut(s) 15, 70, 254
Fnu4HI GCNGC 3 cut(s) 9, 42, 237
FokI GGATG 2 cut(s) 158, 348
Fsp4HI GCNGC 3 cut(s) 9, 42, 237
FspBI CTAG 2 cut(s) 29, 155
GluI GCNGC 3 cut(s) 9, 42, 237
GsaI CCCAGC 1 cut(s) 334
HgaI GACGC 1 cut(s) 109
Hin1II CATG 3 cut(s) 19, 74, 258
HincII GTYRAC 1 cut(s) 175
HindII GTYRAC 1 cut(s) 175
HphI GGTGA 2 cut(s) 257, 290
Hpy166II GTNNAC 1 cut(s) 175
Hpy188I TCNGA 1 cut(s) 306
Hpy188III TCNNGA 4 cut(s) 29, 62, 155, 218
Hpy8I GTNNAC 1 cut(s) 175
Hpy99I CGWCG 1 cut(s) 103
HpyAV CCTTC 1 cut(s) 236
HpyCH4IV ACGT 2 cut(s) 25, 177
HpyCH4V TGCA 3 cut(s) 140, 236, 254
HpyF10VI GCNNNNNNNGC 1 cut(s) 233
HpySE526I ACGT 2 cut(s) 25, 177
Hsp92II CATG 3 cut(s) 19, 74, 258
Kzo9I GATC 2 cut(s) 214, 301
LpnPI CCDG 4 cut(s) 94, 182, 209, 316
Lsp1109I GCAGC 1 cut(s) 248
LweI GCATC 1 cut(s) 171
MaeI CTAG 2 cut(s) 29, 155
MaeII ACGT 2 cut(s) 25, 177
MaeIII GTNAC 1 cut(s) 18
MalI GATC 2 cut(s) 216, 303
MboI GATC 2 cut(s) 214, 301
MboII GAAGA 4 cut(s) 194, 212, 293, 311
MfeI CAATTG 1 cut(s) 188
MluCI AATT 1 cut(s) 188
MmeI TCCRAC 1 cut(s) 55
MnlI CCTC 5 cut(s) 25, 202, 266, 269, 277
MspA1I CMGCKG 2 cut(s) 8, 239
MspR9I CCNGG 1 cut(s) 197
MunI CAATTG 1 cut(s) 188
MvaI CCWGG 1 cut(s) 197
MwoI GCNNNNNNNGC 1 cut(s) 233
NdeII GATC 2 cut(s) 214, 301
NlaIII CATG 3 cut(s) 19, 74, 258
NlaIV GGNNCC 1 cut(s) 79
NspI RCATGY 2 cut(s) 19, 258
NspV TTCGAA 1 cut(s) 106
PciI ACATGT 1 cut(s) 15
PcsI WCGNNNNNNNCGW 2 cut(s) 55, 225
PfoI TCCNGGA 1 cut(s) 195
PkrI GCNGC 3 cut(s) 10, 43, 238
PscI ACATGT 1 cut(s) 15
Psp6I CCWGG 1 cut(s) 195
PspFI CCCAGC 1 cut(s) 330
PspGI CCWGG 1 cut(s) 195
PspN4I GGNNCC 1 cut(s) 79
PspPI GGNCC 1 cut(s) 193
PstNI CAGNNNCTG 1 cut(s) 11
PvuII CAGCTG 2 cut(s) 8, 239
SatI GCNGC 3 cut(s) 9, 42, 237
Sau3AI GATC 2 cut(s) 214, 301
Sau96I GGNCC 1 cut(s) 193
ScrFI CCNGG 1 cut(s) 197
SetI ASST 8 cut(s) 10, 28, 83, 126, 180, 241, 247, 280
SfaNI GCATC 1 cut(s) 171
SfuI TTCGAA 1 cut(s) 106
SinI GGWCC 1 cut(s) 193
SmlI CTYRAG 1 cut(s) 119
SmoI CTYRAG 1 cut(s) 119
Sse9I AATT 1 cut(s) 188
SsiI CCGC 2 cut(s) 41, 266
SspMI CTAG 2 cut(s) 29, 155
StyD4I CCNGG 1 cut(s) 195
TaiI ACGT 2 cut(s) 28, 180
TaqI TCGA 3 cut(s) 106, 363, 386
TasI AATT 1 cut(s) 188
TauI GCSGC 1 cut(s) 44
TscAI CASTG 1 cut(s) 172
TseI GCWGC 2 cut(s) 8, 236
TspDTI ATGAA 2 cut(s) 237, 372
TspGWI ACGGA 1 cut(s) 47
TspRI CASTG 1 cut(s) 172
VpaK11BI GGWCC 1 cut(s) 193
XbaI TCTAGA 2 cut(s) 28, 154
XceI RCATGY 2 cut(s) 19, 258
XspI CTAG 2 cut(s) 29, 155
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.