Rorug02G0047300

Dehydrogenase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000167
Physical Location & Seq
Reverse (-)
3657254 .. 3660853
3600 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0047300.1

Sequence Viewer

Length: 2040 bp
ATGGCGGGAGGGGTTATCCTGTCGTCCCAAACCACAACCCAAACCTTACTCTTTTCCATTCCCAAAATACCCTTCCCACTATGGAAGCTCCCCTTCATTTCCCGCCAATTTTCCTGCAAGTGCTCTCAAACCACCCAAGTCGCAGCAGTGGACTTGGCCAAGTACAAAGAAGCTTTCTCTAGACGAATGGACATGGCCGGCCTCAAACCCCACCACCGAATCGCTATTGGAGTTTCTGGAGGTCCGGATAGTATGGCCTTGTGTGCTTTAGCTGCGTACTGGAAAGGCCAAGGGTATGATGGTAAATGTGATGAGGGATTCATTGATGGGGTTTTGGCTATAATTGTGGATCATGGGCTGCGTGAAGAGAGCACGGAAGAGGCCAGCATTGTTTCCAATCGTGTCGCGAAAATGGGAATCAGAAGTGATGTTGCCTGTTGTGATTGGGAGGATGGTAAGCCGAAACTAGGTCATGTGCAAGAAGCAGCTCGCGAAATGAGGTACCAGATATTTCAGAACGTTTGTATCAAGAACCAGATTGGTGTGTTACTTACGGCACATCATGCTGATGACCAGGCTGAGTTATTTGTTATCAGACTATCTCGCAATAGTGGTATTCTTGGACTTGCTGGTATGCCTTTCACATCTCAAATTTTCTCCTCGCACACCCATTCTCATACTGAAGTTTCTAGAAACTACGGTATTCTTCTTGTGAGACCACTCCTGGATTTTTCAAAAGAAGATATGTACAAGATATGCCAAGGGAGTGATCAGGAATGGGTGGAAGACCCAACAAATCAAAGCCTGTTATATGCTCGTAATAGAATTCGAATGTCCTTAAGGGACGCATCGTGTGCATTCAAAAATGAGCTACAAGCAGTTATTACTGCTTGTCGGAAAACACGCGTATATATTGATCATGTTTGCCATGCTTTGATGTCTAAAGCAGTGACCGTTTCTCATCTAGGATATGCGGTTATTGATTTAGAGATTCTTAATCAATCAAAAGTGGAGGACATATGCCTGTCAAAGTTCATTTCCTTAGTTTTGCAGTTCATCTCACAAAGGCACAGACCACTTAGAGGTAATACTTCAAAATTGCTTGTTGGTTACCTGCGTAGTTTCCCATGCAAGACATCCGTTACTGCGGCTGGCTGCTTCCTTTCTCCAGCTCCTGGGTCTAGAGGCACAAAAGCCCTGGTGTGCTGTTCTGTTGATTCTCCTCTGCCTTCAAATATAGGGTTATCCCATCAACACTTTCAAGCAGTACAAGAACACTCTACTCCAGATGAGATAGAGCAAATTATCGCTGATGGCAAATCCTATGCAGATCACTTGGTTCCAAATGCATCAGATATGCCTTTCTTAGAAGTAACATCTAAATCAGTTTTAACTGAAGTGAGGAGGCTTGGTATGATTAGTGAGGCAACCCATACAAATATTCTTTCATTGCAGAAGGAAGAGATTGAGCATTTCAAGTCCAAGAGTGAAGTAAAAGCTGACTACAAGTCAAAGCATGGAGTCAAATCTATTAGTACATCACCCAGTGAACCACTTCCCCCCGGGCAAATATGTTGCTTCATGAACCGATTTTTTATCACATGGAAACTGAGTGAAGTTTCTGAGGAAGCTTTGGAGGGGGAAAGTCGGTGTGGTGGCAAATCTTGTTTTGGCCATGACACAGTGCTTGAGGTGCGGAACATGAGTGAACAGGATTGGCTGTATCTTTCCGACTTGTCAAAGTCTCATACTTCGGGGAACCTTCAAGAACAAAGCAACTCTTTGGATAGGAAGGTAGACCAAAGAAAAGAGGAGACAGACACATCTCTAGACTATGCAAGGATTTCAGCACAAAGAGCTCTTCAATCCCTGAAATCTATTCCTGCTGCTGCAAGAAGGGGCCTGCCTGTTCTAGTCAATAGTCAAGGACTTCTGCTAAGCATACCAAGCATCGACTTCCAAGGCTGCTCATGCTTAATGGTATCTGCGACATTCAAGCCAAAAGTACCACTTGGGGGAGACCATAGTTCATTCGTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
ADH_N ADH_zinc_N

Protein Analysis

679

Amino Acids

75.0

Weight (kDa)

7.53

Isoelectric Point (pI)

48.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ATP_bind_3 PF01171 74 - 278 2e-51 PP-loop domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000167)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G37980 AT4G37980 AT4G37990
fragaria_vesca FvH4_1g19210 FvH4_1g19220 FvH4_1g19240 FvH4_1g19240 FvH4_1g19261 FvH4_1g19262 FvH4_1g19263 FvH4_1g19263 FvH4_1g19265 FvH4_1g19281 FvH4_1g19281 FvH4_7g07240 FvH4_7g07240 FvH4_7g07240
malus_domestica MD01G1042500.v1.1 MD01G1042600.v1.1 MD01G1042800.v1.1 MD01G1042900.v1.1 MD05G1034100.v1.1 MD10G1035900.v1.1 MD10G1036000.v1.1 MD10G1155000.v1.1 MD10G1155100.v1.1 MD10G1155200.v1.1 MD10G1155400.v1.1 MD10G1155700.v1.1 MD10G1155800.v1.1 MD15G1308800.v1.1 MD15G1308900.v1.1
prunus_persica Prupe.6G205600_v2.0.a1 Prupe.6G205700_v2.0.a1 Prupe.6G205800_v2.0.a1 Prupe.6G205900_v2.0.a1 Prupe.6G206300_v2.0.a1 Prupe.6G206800_v2.0.a1 Prupe.6G207100_v2.0.a1 Prupe.6G207200_v2.0.a1 Prupe.6G207300_v2.0.a1 Prupe.6G207400_v2.0.a1 Prupe.6G207500_v2.0.a1 Prupe.6G207600_v2.0.a1 Prupe.6G207700_v2.0.a1 Prupe.6G207900_v2.0.a1
pyrus_communis pycom01g06970 pycom01g06980 pycom01g06990 pycom05g02460 pycom08g00750 pycom10g13410 pycom15g27310 pycom15g27320
rosa_chinensis RchiOBHm_Chr1g0314861 RchiOBHm_Chr1g0345441 RchiOBHm_Chr1g0345451 RchiOBHm_Chr1g0345621 RchiOBHm_Chr1g0345751 RchiOBHm_Chr1g0345861 RchiOBHm_Chr1g0345871 RchiOBHm_Chr1g0345891 RchiOBHm_Chr2g0094851 RchiOBHm_Chr2g0110471 RchiOBHm_Chr2g0110511 RchiOBHm_Chr2g0110531 RchiOBHm_Chr2g0110541 RchiOBHm_Chr2g0110571 RchiOBHm_Chr5g0039381 RchiOBHm_Chr5g0039391 RchiOBHm_Chr6g0270311 RchiOBHm_Chr6g0270331 RchiOBHm_Chr6g0270411 RchiOBHm_Chr6g0270431
rosa_laevigata RLG00000000515 RLG00000013793 RLG00000013797 RLG00000013799 RLG00000016525 RLG00000017808 RLG00000017811 RLG00000017813 RLG00000017816 RLG00000017819 RLG00000017822 RLG00000017824 RLG00000017825 RLG00000028835
rosa_multiflora Rmu_co8225458.1_g000001 Rmu_sc0000389.1_g000006 Rmu_sc0000389.1_g000014 Rmu_sc0000389.1_g000023 Rmu_sc0001292.1_g000012 Rmu_sc0001292.1_g000026 Rmu_sc0002145.1_g000003 Rmu_sc0002329.1_g000033 Rmu_sc0002833.1_g000044 Rmu_sc0004316.1_g000012 Rmu_sc0004439.1_g000003 Rmu_sc0006422.1_g000028 Rmu_sc0009479.1_g000012 Rmu_sc0010489.1_g000009 Rmu_sc0010489.1_g000010 Rmu_sc0017837.1_g000003 Rmu_sc0032320.1_g000001
rosa_roxburghii Rroxscaffold_1G00050770 Rroxscaffold_2G00133110 Rroxscaffold_2G00133140 Rroxscaffold_2G00133200 Rroxscaffold_2G00133270 Rroxscaffold_2G00133290 Rroxscaffold_2G00133300 Rroxscaffold_2G00133350 Rroxscaffold_4G00292490 Rroxscaffold_4G00309020 Rroxscaffold_4G00331740 Rroxscaffold_4G00331800 Rroxscaffold_6G00404470 Rroxscaffold_7G00197950 Rroxscaffold_7G00197990 Rroxscaffold_7G00198020
rosa_rugosa Rorug01G0002500 Rorug02G0047200 Rorug02G0047300 Rorug02G0047300 Rorug02G0047400 Rorug02G0168000 Rorug02G0168000 Rorug02G0168100 Rorug02G0168100 Rorug02G0168400.1 Rorug03G0157600 Rorug03G0157700 Rorug05G0112600 Rorug06G0054600 Rorug06G0054700
rosa_samantha Rh1AG013300 Rh1AG195600 Rh1AG195700 Rh1AG196000 Rh1BG004900 Rh1BG114300 Rh2AG132300 Rh2BG095500 Rh2BG229700 Rh2BG229800 Rh2CG097400 Rh2CG221500 Rh2CG221800 Rh2CG222100 Rh2CG222200 Rh2CG222500 Rh2CG222600 Rh2CG345000 Rh5BG269700 Rh6AG172900 Rh6AG173100 Rh6CG080500 Rh6DG075900 Rh6DG164700 Rh6DG164900 Rh6DG165200 Rh6DG165300
rosa_wichuraiana Rw0G015390 Rw1G000600 Rw1G016130 Rw1G016190 Rw2G007140 Rw2G016970 Rw2G016990 Rw2G017000 Rw3G018910 Rw3G018920 Rw3G018930 Rw5G024830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1122
Acc65I GGTACC 1 cut(s) 501
AccB1I GGYRCC 1 cut(s) 501
AccB7I CCANNNNNTGG 1 cut(s) 1175
AccI GTMKAC 1 cut(s) 1797
AccII CGCG 3 cut(s) 407, 492, 906
AccIII TCCGGA 1 cut(s) 244
AciI CCGC 5 cut(s) 5, 103, 974, 1148, 1696
AclI AACGTT 1 cut(s) 519
AclWI GGATC 1 cut(s) 357
AcoI YGGCCR 3 cut(s) 156, 195, 1672
AcsI RAATTY 2 cut(s) 651, 825
AcuI CTGAAG 2 cut(s) 702, 1416
AdeI CACNNNGTG 1 cut(s) 1547
AfaI GTAC 7 cut(s) 164, 278, 503, 749, 1269, 1537, 2007
AfiI CCNNNNNNNGG 4 cut(s) 467, 1082, 1175, 2015
AflII CTTAAG 1 cut(s) 838
AflIII ACRYGT 1 cut(s) 904
AgsI TTSAA 9 cut(s) 735, 862, 1095, 1233, 1262, 1477, 1766, 1865, 1996
AhdI GACNNNNNGTC 1 cut(s) 1507
AjnI CCWGG 4 cut(s) 573, 723, 1174, 1197
AjuI GAANNNNNNNTTGG 2 cut(s) 56, 88
AluBI AGCT 9 cut(s) 88, 173, 272, 488, 871, 1172, 1499, 1631, 1859
AluI AGCT 9 cut(s) 88, 173, 272, 488, 871, 1172, 1499, 1631, 1859
Alw21I GWGCWC 3 cut(s) 125, 374, 1861
Alw26I GTCTC 4 cut(s) 709, 1749, 1808, 2013
AlwI GGATC 1 cut(s) 357
AlwNI CAGNNNCTG 1 cut(s) 1175
Ama87I CYCGRG 1 cut(s) 1562
Aor13HI TCCGGA 1 cut(s) 244
AoxI GGCC 8 cut(s) 156, 195, 199, 255, 286, 381, 1672, 1900
ApeKI GCWGC 8 cut(s) 143, 272, 358, 485, 1155, 1886, 1889, 1965
ApoI RAATTY 2 cut(s) 651, 825
Asp700I GAANNNNTTC 1 cut(s) 1554
Asp718I GGTACC 1 cut(s) 501
AspS9I GGNCC 2 cut(s) 242, 1900
AsuC2I CCSGG 2 cut(s) 1563, 1564
AsuHPI GGTGA 1 cut(s) 1533
AsuII TTCGAA 1 cut(s) 829
AvaI CYCGRG 1 cut(s) 1562
AvaII GGWCC 1 cut(s) 242
BaeI ACNNNNGTAYC 2 cut(s) 508, 541
BalI TGGCCA 2 cut(s) 158, 1674
BanI GGYRCC 1 cut(s) 501
BanII GRGCYC 1 cut(s) 1861
BbsI GAAGAC 1 cut(s) 792
Bbv12I GWGCWC 3 cut(s) 125, 374, 1861
BbvI GCAGC 8 cut(s) 155, 259, 345, 497, 1142, 1873, 1876, 1952
BccI CCATC 5 cut(s) 293, 320, 446, 1257, 1307
BceAI ACGGC 1 cut(s) 570
BciT130I CCWGG 4 cut(s) 575, 725, 1176, 1199
BclI TGATCA 2 cut(s) 769, 916
BcnI CCSGG 2 cut(s) 1563, 1564
BcoDI GTCTC 4 cut(s) 709, 1749, 1808, 2013
BfaI CTAG 8 cut(s) 180, 467, 690, 965, 1182, 1829, 1913, 2038
BfrI CTTAAG 1 cut(s) 838
BfuAI ACCTGC 1 cut(s) 1122
BisI GCNGC 9 cut(s) 144, 273, 359, 486, 1149, 1156, 1887, 1890, 1966
BlpI GCTNAGC 1 cut(s) 1937
BlsI GCNGC 9 cut(s) 145, 274, 360, 487, 1150, 1157, 1888, 1891, 1967
Bme1390I CCNGG 6 cut(s) 575, 725, 1176, 1199, 1563, 1564
Bme18I GGWCC 1 cut(s) 242
BmeRI GACNNNNNGTC 1 cut(s) 1507
BmeT110I CYCGRG 1 cut(s) 1562
BmgT120I GGNCC 2 cut(s) 242, 1900
BmiI GGNNCC 4 cut(s) 503, 1341, 1760, 1901
BmrFI CCNGG 6 cut(s) 575, 725, 1176, 1199, 1563, 1564
BmrI ACTGGG 1 cut(s) 1539
BmsI GCATC 3 cut(s) 857, 1358, 1959
BmuI ACTGGG 1 cut(s) 1539
BpiI GAAGAC 1 cut(s) 792
BpmI CTGGAG 3 cut(s) 258, 1152, 1269
Bpu1102I GCTNAGC 1 cut(s) 1937
Bpu14I TTCGAA 1 cut(s) 829
BpuEI CTTGAG 1 cut(s) 1709
BpuMI CCSGG 2 cut(s) 1563, 1564
BsaI GGTCTC 2 cut(s) 709, 2013
BsaJI CCNNGG 7 cut(s) 289, 760, 1175, 1197, 1561, 1562, 1960
BsaWI WCCGGW 1 cut(s) 244
BsaXI ACNNNNNCTCC 2 cut(s) 1396, 1426
Bsc4I CCNNNNNNNGG 4 cut(s) 467, 1082, 1175, 2015
Bse118I RCCGGY 1 cut(s) 197
Bse1I ACTGG 2 cut(s) 284, 1545
Bse3DI GCAATG 1 cut(s) 1448
BseAI TCCGGA 1 cut(s) 244
BseBI CCWGG 4 cut(s) 575, 725, 1176, 1199
BseDI CCNNGG 7 cut(s) 289, 760, 1175, 1197, 1561, 1562, 1960
BseGI GGATG 2 cut(s) 457, 1136
BseLI CCNNNNNNNGG 4 cut(s) 467, 1082, 1175, 2015
BseMI GCAATG 1 cut(s) 1448
BseMII CTCAG 3 cut(s) 570, 1601, 1614
BseNI ACTGG 2 cut(s) 284, 1545
BseRI GAGGAG 4 cut(s) 649, 1212, 1417, 1826
BseXI GCAGC 8 cut(s) 155, 259, 345, 497, 1142, 1873, 1876, 1952
Bsh1236I CGCG 3 cut(s) 407, 492, 906
BshFI GGCC 8 cut(s) 158, 197, 201, 257, 288, 383, 1674, 1902
BshNI GGYRCC 1 cut(s) 501
BsiHKAI GWGCWC 3 cut(s) 125, 374, 1861
BsiHKCI CYCGRG 1 cut(s) 1562
BsiSI CCGG 3 cut(s) 198, 245, 1563
BslFI GGGAC 2 cut(s) 10, 857
BslI CCNNNNNNNGG 4 cut(s) 467, 1082, 1175, 2015
BsmAI GTCTC 4 cut(s) 709, 1749, 1808, 2013
BsmFI GGGAC 2 cut(s) 10, 857
BsmI GAATGC 1 cut(s) 857
BsnI GGCC 8 cut(s) 158, 197, 201, 257, 288, 383, 1674, 1902
Bso31I GGTCTC 2 cut(s) 709, 2013
BsoBI CYCGRG 1 cut(s) 1562
Bsp119I TTCGAA 1 cut(s) 829
Bsp1286I GDGCHC 3 cut(s) 125, 374, 1861
Bsp13I TCCGGA 1 cut(s) 244
Bsp1407I TGTACA 1 cut(s) 747
Bsp143I GATC 4 cut(s) 349, 769, 916, 1330
Bsp1720I GCTNAGC 1 cut(s) 1937
Bsp68I TCGCGA 2 cut(s) 407, 492
BspACI CCGC 5 cut(s) 5, 103, 974, 1148, 1696
BspANI GGCC 8 cut(s) 158, 197, 201, 257, 288, 383, 1674, 1902
BspCNI CTCAG 3 cut(s) 571, 1602, 1615
BspEI TCCGGA 1 cut(s) 244
BspFNI CGCG 3 cut(s) 407, 492, 906
BspHI TCATGA 1 cut(s) 1581
BspLI GGNNCC 4 cut(s) 503, 1341, 1760, 1901
BspMI ACCTGC 1 cut(s) 1122
BspPI GGATC 1 cut(s) 357
BspQI GCTCTTC 1 cut(s) 1866
BspT104I TTCGAA 1 cut(s) 829
BspT107I GGYRCC 1 cut(s) 501
BspTI CTTAAG 1 cut(s) 838
BspTNI GGTCTC 2 cut(s) 709, 2013
BsrDI GCAATG 1 cut(s) 1448
BsrFI RCCGGY 1 cut(s) 197
BsrGI TGTACA 1 cut(s) 747
BsrI ACTGG 2 cut(s) 284, 1545
BssAI RCCGGY 1 cut(s) 197
BssECI CCNNGG 7 cut(s) 289, 760, 1175, 1197, 1561, 1562, 1960
BssMI GATC 4 cut(s) 349, 769, 916, 1330
BssT1I CCWWGG 3 cut(s) 289, 760, 1960
Bst2UI CCWGG 4 cut(s) 575, 725, 1176, 1199
Bst4CI ACNGT 3 cut(s) 701, 955, 1684
Bst6I CTCTTC 4 cut(s) 360, 372, 1455, 1866
BstAFI CTTAAG 1 cut(s) 838
BstAPI GCANNNNNTGC 2 cut(s) 563, 854
BstAUI TGTACA 1 cut(s) 747
BstBI TTCGAA 1 cut(s) 829
BstC8I GCNNGC 5 cut(s) 199, 385, 490, 1153, 1904
BstDEI CTNAG 7 cut(s) 579, 1042, 1079, 1366, 1610, 1623, 1937
BstEII GGTNACC 1 cut(s) 1109
BstF5I GGATG 2 cut(s) 457, 1136
BstFNI CGCG 3 cut(s) 407, 492, 906
BstKTI GATC 4 cut(s) 352, 772, 919, 1333
BstMAI GTCTC 4 cut(s) 709, 1749, 1808, 2013
BstMBI GATC 4 cut(s) 349, 769, 916, 1330
BstMWI GCNNNNNNNGC 8 cut(s) 263, 272, 563, 854, 1693, 1856, 1947, 1971
BstNI CCWGG 4 cut(s) 575, 725, 1176, 1199
BstPI GGTNACC 1 cut(s) 1109
BstSCI CCNGG 6 cut(s) 573, 723, 1174, 1197, 1561, 1562
BstUI CGCG 3 cut(s) 407, 492, 906
BstV1I GCAGC 8 cut(s) 155, 259, 345, 497, 1142, 1873, 1876, 1952
BstV2I GAAGAC 1 cut(s) 792
BsuRI GGCC 8 cut(s) 158, 197, 201, 257, 288, 383, 1674, 1902
BtsCI GGATG 2 cut(s) 457, 1136
BtsI GCAGTG 2 cut(s) 153, 954
BtsIMutI CAGTG 4 cut(s) 153, 954, 1552, 1689
BtuMI TCGCGA 2 cut(s) 407, 492
BveI ACCTGC 1 cut(s) 1122
Cac8I GCNNGC 5 cut(s) 199, 385, 490, 1153, 1904
CaiI CAGNNNCTG 1 cut(s) 1175
CciI TCATGA 1 cut(s) 1581
Cfr10I RCCGGY 1 cut(s) 197
Cfr13I GGNCC 2 cut(s) 242, 1900
Cfr9I CCCGGG 1 cut(s) 1562
CseI GACGC 1 cut(s) 854
Csp6I GTAC 7 cut(s) 163, 277, 502, 748, 1268, 1536, 2006
CviQI GTAC 7 cut(s) 163, 277, 502, 748, 1268, 1536, 2006
DdeI CTNAG 7 cut(s) 579, 1042, 1079, 1366, 1610, 1623, 1937
DpnI GATC 4 cut(s) 351, 771, 918, 1332
DpnII GATC 4 cut(s) 349, 769, 916, 1330
DraIII CACNNNGTG 1 cut(s) 1547
DriI GACNNNNNGTC 1 cut(s) 1507
EaeI YGGCCR 3 cut(s) 156, 195, 1672
Eam1104I CTCTTC 4 cut(s) 360, 372, 1455, 1866
Eam1105I GACNNNNNGTC 1 cut(s) 1507
EarI CTCTTC 4 cut(s) 360, 372, 1455, 1866
Ecl136II GAGCTC 1 cut(s) 1859
Eco130I CCWWGG 3 cut(s) 289, 760, 1960
Eco24I GRGCYC 1 cut(s) 1861
Eco31I GGTCTC 2 cut(s) 709, 2013
Eco47I GGWCC 1 cut(s) 242
Eco53kI GAGCTC 1 cut(s) 1859
Eco57I CTGAAG 2 cut(s) 702, 1416
Eco88I CYCGRG 1 cut(s) 1562
Eco91I GGTNACC 1 cut(s) 1109
EcoICRI GAGCTC 1 cut(s) 1859
EcoO109I RGGNCCY 1 cut(s) 1900
EcoO65I GGTNACC 1 cut(s) 1109
EcoRI GAATTC 1 cut(s) 825
EcoRII CCWGG 4 cut(s) 573, 723, 1174, 1197
EcoT14I CCWWGG 3 cut(s) 289, 760, 1960
EcoT22I ATGCAT 1 cut(s) 1351
EcoT38I GRGCYC 1 cut(s) 1861
ErhI CCWWGG 3 cut(s) 289, 760, 1960
FalI AAGNNNNNCTT 6 cut(s) 77, 109, 1765, 1797, 1995, 2027
FaqI GGGAC 2 cut(s) 10, 857
FauI CCCGC 1 cut(s) 110
FauNDI CATATG 1 cut(s) 1019
FbaI TGATCA 2 cut(s) 769, 916
FblI GTMKAC 1 cut(s) 1797
Fnu4HI GCNGC 9 cut(s) 144, 273, 359, 486, 1149, 1156, 1887, 1890, 1966
FokI GGATG 2 cut(s) 464, 1123
FriOI GRGCYC 1 cut(s) 1861
FseI GGCCGGCC 1 cut(s) 201
Fsp4HI GCNGC 9 cut(s) 144, 273, 359, 486, 1149, 1156, 1887, 1890, 1966
FspBI CTAG 8 cut(s) 180, 467, 690, 965, 1182, 1829, 1913, 2038
GluI GCNGC 9 cut(s) 144, 273, 359, 486, 1149, 1156, 1887, 1890, 1966
GsuI CTGGAG 3 cut(s) 258, 1152, 1269
HaeIII GGCC 8 cut(s) 158, 197, 201, 257, 288, 383, 1674, 1902
HapII CCGG 3 cut(s) 198, 245, 1563
HgaI GACGC 1 cut(s) 854
HindIII AAGCTT 2 cut(s) 171, 1629
HinfI GANTC 6 cut(s) 219, 318, 417, 991, 1217, 1521
HpaII CCGG 3 cut(s) 198, 245, 1563
HphI GGTGA 1 cut(s) 1533
Hpy166II GTNNAC 4 cut(s) 151, 1550, 1709, 1798
Hpy188I TCNGA 7 cut(s) 422, 516, 596, 897, 1354, 1624, 1732
Hpy8I GTNNAC 4 cut(s) 151, 1550, 1709, 1798
HpyAV CCTTC 7 cut(s) 82, 103, 1239, 1450, 1772, 1786, 1890
HpyCH4III ACNGT 3 cut(s) 701, 955, 1684
HpyCH4IV ACGT 1 cut(s) 519
HpyF10VI GCNNNNNNNGC 8 cut(s) 263, 272, 563, 854, 1693, 1856, 1947, 1971
HpyF3I CTNAG 7 cut(s) 579, 1042, 1079, 1366, 1610, 1623, 1937
HpySE526I ACGT 1 cut(s) 519
Kpn2I TCCGGA 1 cut(s) 244
KpnI GGTACC 1 cut(s) 505
KroI GCCGGC 1 cut(s) 197
KroNI GCCGGC 1 cut(s) 199
Ksp22I TGATCA 2 cut(s) 769, 916
Kzo9I GATC 4 cut(s) 349, 769, 916, 1330
LguI GCTCTTC 1 cut(s) 1866
LmnI GCTCC 2 cut(s) 93, 1177
Lsp1109I GCAGC 8 cut(s) 155, 259, 345, 497, 1142, 1873, 1876, 1952
LweI GCATC 3 cut(s) 857, 1358, 1959
MaeI CTAG 8 cut(s) 180, 467, 690, 965, 1182, 1829, 1913, 2038
MaeII ACGT 1 cut(s) 519
MaeIII GTNAC 5 cut(s) 546, 949, 1109, 1141, 1372
MalI GATC 4 cut(s) 351, 771, 918, 1332
MboI GATC 4 cut(s) 349, 769, 916, 1330
MboII GAAGA 7 cut(s) 377, 389, 698, 752, 797, 1472, 1853
MhlI GDGCHC 3 cut(s) 125, 374, 1861
MlsI TGGCCA 2 cut(s) 158, 1674
MluCI AATT 6 cut(s) 107, 342, 651, 825, 1097, 1302
MluI ACGCGT 1 cut(s) 904
MluNI TGGCCA 2 cut(s) 158, 1674
MlyI GAGTC 1 cut(s) 1530
MmeI TCCRAC 2 cut(s) 875, 1755
Mox20I TGGCCA 2 cut(s) 158, 1674
Mph1103I ATGCAT 1 cut(s) 1351
MroI TCCGGA 1 cut(s) 244
MroNI GCCGGC 1 cut(s) 197
MroXI GAANNNNTTC 1 cut(s) 1554
MscI TGGCCA 2 cut(s) 158, 1674
MseI TTAA 4 cut(s) 839, 996, 1391, 1976
MslI CAYNNNNRTG 1 cut(s) 567
Msp20I TGGCCA 2 cut(s) 158, 1674
MspCI CTTAAG 1 cut(s) 838
MspI CCGG 3 cut(s) 198, 245, 1563
MspR9I CCNGG 6 cut(s) 575, 725, 1176, 1199, 1563, 1564
Mva1269I GAATGC 1 cut(s) 857
MvaI CCWGG 4 cut(s) 575, 725, 1176, 1199
MvnI CGCG 3 cut(s) 407, 492, 906
MwoI GCNNNNNNNGC 8 cut(s) 263, 272, 563, 854, 1693, 1856, 1947, 1971
NaeI GCCGGC 1 cut(s) 199
NciI CCSGG 2 cut(s) 1563, 1564
NdeI CATATG 1 cut(s) 1019
NdeII GATC 4 cut(s) 349, 769, 916, 1330
NgoMIV GCCGGC 1 cut(s) 197
NlaIV GGNNCC 4 cut(s) 503, 1341, 1760, 1901
NmuCI GTSAC 1 cut(s) 949
NruI TCGCGA 2 cut(s) 407, 492
NsiI ATGCAT 1 cut(s) 1351
NspV TTCGAA 1 cut(s) 829
PagI TCATGA 1 cut(s) 1581
PciSI GCTCTTC 1 cut(s) 1866
PctI GAATGC 1 cut(s) 857
PdiI GCCGGC 1 cut(s) 199
PdmI GAANNNNTTC 1 cut(s) 1554
PfeI GAWTC 5 cut(s) 219, 318, 417, 991, 1217
PflMI CCANNNNNTGG 1 cut(s) 1175
PfoI TCCNGGA 1 cut(s) 723
PkrI GCNGC 9 cut(s) 145, 274, 360, 487, 1150, 1157, 1888, 1891, 1967
PleI GAGTC 1 cut(s) 1529
PpsI GAGTC 1 cut(s) 1529
Psp124BI GAGCTC 1 cut(s) 1861
Psp1406I AACGTT 1 cut(s) 519
Psp6I CCWGG 4 cut(s) 573, 723, 1174, 1197
PspEI GGTNACC 1 cut(s) 1109
PspGI CCWGG 4 cut(s) 573, 723, 1174, 1197
PspN4I GGNNCC 4 cut(s) 503, 1341, 1760, 1901
PspPI GGNCC 2 cut(s) 242, 1900
PstNI CAGNNNCTG 1 cut(s) 1175
RigI GGCCGGCC 1 cut(s) 201
RruI TCGCGA 2 cut(s) 407, 492
RsaI GTAC 7 cut(s) 164, 278, 503, 749, 1269, 1537, 2007
RsaNI GTAC 7 cut(s) 163, 277, 502, 748, 1268, 1536, 2006
RseI CAYNNNNRTG 1 cut(s) 567
SacI GAGCTC 1 cut(s) 1861
SapI GCTCTTC 1 cut(s) 1866
SaqAI TTAA 4 cut(s) 839, 996, 1391, 1976
SatI GCNGC 9 cut(s) 144, 273, 359, 486, 1149, 1156, 1887, 1890, 1966
Sau3AI GATC 4 cut(s) 349, 769, 916, 1330
Sau96I GGNCC 2 cut(s) 242, 1900
SchI GAGTC 1 cut(s) 1530
ScrFI CCNGG 6 cut(s) 575, 725, 1176, 1199, 1563, 1564
SduI GDGCHC 3 cut(s) 125, 374, 1861
SfaNI GCATC 3 cut(s) 857, 1358, 1959
SfuI TTCGAA 1 cut(s) 829
SinI GGWCC 1 cut(s) 242
SmaI CCCGGG 1 cut(s) 1564
SmiMI CAYNNNNRTG 1 cut(s) 567
SmlI CTYRAG 2 cut(s) 838, 1688
SmoI CTYRAG 2 cut(s) 838, 1688
Sse9I AATT 6 cut(s) 107, 342, 651, 825, 1097, 1302
SsiI CCGC 5 cut(s) 5, 103, 974, 1148, 1696
SspI AATATT 1 cut(s) 1441
SspMI CTAG 8 cut(s) 180, 467, 690, 965, 1182, 1829, 1913, 2038
SstI GAGCTC 1 cut(s) 1861
StyD4I CCNGG 6 cut(s) 573, 723, 1174, 1197, 1561, 1562
StyI CCWWGG 3 cut(s) 289, 760, 1960
TaaI ACNGT 3 cut(s) 701, 955, 1684
TaiI ACGT 1 cut(s) 522
TaqI TCGA 2 cut(s) 829, 1953
TasI AATT 6 cut(s) 107, 342, 651, 825, 1097, 1302
TatI WGTACW 4 cut(s) 162, 747, 1267, 1535
TauI GCSGC 1 cut(s) 1151
TfiI GAWTC 5 cut(s) 219, 318, 417, 991, 1217
Tru1I TTAA 4 cut(s) 839, 996, 1391, 1976
Tru9I TTAA 4 cut(s) 839, 996, 1391, 1976
TscAI CASTG 4 cut(s) 153, 954, 1552, 1689
TseFI GTSAC 1 cut(s) 949
TseI GCWGC 8 cut(s) 143, 272, 358, 485, 1155, 1886, 1889, 1965
Tsp45I GTSAC 1 cut(s) 949
TspDTI ATGAA 8 cut(s) 85, 310, 1024, 1045, 1437, 1570, 1598, 2019
TspGWI ACGGA 2 cut(s) 389, 1129
TspMI CCCGGG 1 cut(s) 1562
TspRI CASTG 4 cut(s) 153, 954, 1552, 1689
Van91I CCANNNNNTGG 1 cut(s) 1175
Vha464I CTTAAG 1 cut(s) 838
VpaK11BI GGWCC 1 cut(s) 242
XapI RAATTY 2 cut(s) 651, 825
XbaI TCTAGA 4 cut(s) 179, 689, 1181, 1828
XcmI CCANNNNNNNNNTGG 1 cut(s) 296
XmaI CCCGGG 1 cut(s) 1562
XmiI GTMKAC 1 cut(s) 1797
XmnI GAANNNNTTC 1 cut(s) 1554
XspI CTAG 8 cut(s) 180, 467, 690, 965, 1182, 1829, 1913, 2038
Zsp2I ATGCAT 1 cut(s) 1351
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.