MD15G1308900.v1.1

Dehydrogenase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0000167
Physical Location & Seq
Forward (+)
30973409 .. 30975275
1867 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1308900.v1.1.491

Sequence Viewer

Length: 1086 bp
ATGGCGAAATCTCCTGAACAAGAACACCCGAAGAAGGCCTTTGGATGGGCGGCTAGAGATTCGTCTGGTGTTCTCTCTCCCTTCAAGTTCTCAAGAAGGGTAACTGGCGAGAAAGACGTGACATTCAAAGTATTGTACTGTGGTATATGCCATTCGGACCTTCACACAATCAAAAGTGAGTGGGGGATTACTACCTATCCTCTGGTTCCCGGGCATGAGATTGTTGGTACGGTGACACAAGTGGGAAACAAAGTACAAAAATTTAAAGTTGGAGATAAAGTAGGTGTTGGATGCTTGGTGGGTTCTTGCCAATCTTGTGATAATTGTTCCAAAAATTTGGAGAACTACTGCCCCAAAATGATACAAACCTATGGTTCAAAGTACCATGACGGAACCATGACACATGGGGGTTATTCTGACATCATGGTGGCTGATGAAAACTTCATTGTCCGTATTCCTGACGAACTACCTCTTGATGGTGCTGCTCCTCTCCTTTGTGCCGGGATCACAACTTACAGCCCCTTGAGACTTCATGGCCTTGACAGACCCGGTATGCATATTGGTGTGGTTGGTCTAGGTGGTCTAGGACATGCAGCCGTGAAGTTTGCCAAGGCTTTTGGGGTTAAGGTCACAGTGATTAGTACCTCCCCCAATAAGAAGGAAGAAGCAATTAATCGTCTCAAAGCTGATTCATTTTTGGTTAGCCGTGAACAAGATCAAATGAAGGCTGCCATGGGCACAATGGATGGTATTATTGACACGGTTTCTGCAGTCCACCCTCTCTTGCCTTTACTTGGTTTGTTGAAGTCTAATGGGAAACTTGTAATGGTTGGTTTACCAGAAAAGCCTTTTGAGCTTCCAATTTTTCCACTGGTCGCGGGAGGGAAGATAGTAGCTGGTAGTTGCATTGGAGGTTTAAAGGAAACTCAAGAGATGATTGATTTTGCAGGCAAGCACAACATAACAGCTGACATCGAAGTTATTCCAATTGATTATTTGAATACAGCAATGGAGCGTCTTGCCAAAGCCGATGTTAGATACCGATTTGTCATCGACATTGGAAACACATTGAAGTCTGCCGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
ADH_N ADH_zinc_N

Protein Analysis

362

Amino Acids

38.87

Weight (kDa)

8.27

Isoelectric Point (pI)

28.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ADH_N PF08240 36 - 154 4.2e-27 Alcohol dehydrogenase GroES-like domain
2-Hacid_dh_C PF02826 176 - 223 1.4e-06 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
ADH_zinc_N PF00107 194 - 316 4.1e-19 Zinc-binding dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000167)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G37980 AT4G37980 AT4G37990
fragaria_vesca FvH4_1g19210 FvH4_1g19220 FvH4_1g19240 FvH4_1g19240 FvH4_1g19261 FvH4_1g19262 FvH4_1g19263 FvH4_1g19263 FvH4_1g19265 FvH4_1g19281 FvH4_1g19281 FvH4_7g07240 FvH4_7g07240 FvH4_7g07240
malus_domestica MD01G1042500.v1.1 MD01G1042600.v1.1 MD01G1042800.v1.1 MD01G1042900.v1.1 MD05G1034100.v1.1 MD10G1035900.v1.1 MD10G1036000.v1.1 MD10G1155000.v1.1 MD10G1155100.v1.1 MD10G1155200.v1.1 MD10G1155400.v1.1 MD10G1155700.v1.1 MD10G1155800.v1.1 MD15G1308800.v1.1 MD15G1308900.v1.1
prunus_persica Prupe.6G205600_v2.0.a1 Prupe.6G205700_v2.0.a1 Prupe.6G205800_v2.0.a1 Prupe.6G205900_v2.0.a1 Prupe.6G206300_v2.0.a1 Prupe.6G206800_v2.0.a1 Prupe.6G207100_v2.0.a1 Prupe.6G207200_v2.0.a1 Prupe.6G207300_v2.0.a1 Prupe.6G207400_v2.0.a1 Prupe.6G207500_v2.0.a1 Prupe.6G207600_v2.0.a1 Prupe.6G207700_v2.0.a1 Prupe.6G207900_v2.0.a1
pyrus_communis pycom01g06970 pycom01g06980 pycom01g06990 pycom05g02460 pycom08g00750 pycom10g13410 pycom15g27310 pycom15g27320
rosa_chinensis RchiOBHm_Chr1g0314861 RchiOBHm_Chr1g0345441 RchiOBHm_Chr1g0345451 RchiOBHm_Chr1g0345621 RchiOBHm_Chr1g0345751 RchiOBHm_Chr1g0345861 RchiOBHm_Chr1g0345871 RchiOBHm_Chr1g0345891 RchiOBHm_Chr2g0094851 RchiOBHm_Chr2g0110471 RchiOBHm_Chr2g0110511 RchiOBHm_Chr2g0110531 RchiOBHm_Chr2g0110541 RchiOBHm_Chr2g0110571 RchiOBHm_Chr5g0039381 RchiOBHm_Chr5g0039391 RchiOBHm_Chr6g0270311 RchiOBHm_Chr6g0270331 RchiOBHm_Chr6g0270411 RchiOBHm_Chr6g0270431
rosa_laevigata RLG00000000515 RLG00000013793 RLG00000013797 RLG00000013799 RLG00000016525 RLG00000017808 RLG00000017811 RLG00000017813 RLG00000017816 RLG00000017819 RLG00000017822 RLG00000017824 RLG00000017825 RLG00000028835
rosa_multiflora Rmu_co8225458.1_g000001 Rmu_sc0000389.1_g000006 Rmu_sc0000389.1_g000014 Rmu_sc0000389.1_g000023 Rmu_sc0001292.1_g000012 Rmu_sc0001292.1_g000026 Rmu_sc0002145.1_g000003 Rmu_sc0002329.1_g000033 Rmu_sc0002833.1_g000044 Rmu_sc0004316.1_g000012 Rmu_sc0004439.1_g000003 Rmu_sc0006422.1_g000028 Rmu_sc0009479.1_g000012 Rmu_sc0010489.1_g000009 Rmu_sc0010489.1_g000010 Rmu_sc0017837.1_g000003 Rmu_sc0032320.1_g000001
rosa_roxburghii Rroxscaffold_1G00050770 Rroxscaffold_2G00133110 Rroxscaffold_2G00133140 Rroxscaffold_2G00133200 Rroxscaffold_2G00133270 Rroxscaffold_2G00133290 Rroxscaffold_2G00133300 Rroxscaffold_2G00133350 Rroxscaffold_4G00292490 Rroxscaffold_4G00309020 Rroxscaffold_4G00331740 Rroxscaffold_4G00331800 Rroxscaffold_6G00404470 Rroxscaffold_7G00197950 Rroxscaffold_7G00197990 Rroxscaffold_7G00198020
rosa_rugosa Rorug01G0002500 Rorug02G0047200 Rorug02G0047300 Rorug02G0047300 Rorug02G0047400 Rorug02G0168000 Rorug02G0168000 Rorug02G0168100 Rorug02G0168100 Rorug02G0168400.1 Rorug03G0157600 Rorug03G0157700 Rorug05G0112600 Rorug06G0054600 Rorug06G0054700
rosa_samantha Rh1AG013300 Rh1AG195600 Rh1AG195700 Rh1AG196000 Rh1BG004900 Rh1BG114300 Rh2AG132300 Rh2BG095500 Rh2BG229700 Rh2BG229800 Rh2CG097400 Rh2CG221500 Rh2CG221800 Rh2CG222100 Rh2CG222200 Rh2CG222500 Rh2CG222600 Rh2CG345000 Rh5BG269700 Rh6AG172900 Rh6AG173100 Rh6CG080500 Rh6DG075900 Rh6DG164700 Rh6DG164900 Rh6DG165200 Rh6DG165300
rosa_wichuraiana Rw0G015390 Rw1G000600 Rw1G016130 Rw1G016190 Rw2G007140 Rw2G016970 Rw2G016990 Rw2G017000 Rw3G018910 Rw3G018920 Rw3G018930 Rw5G024830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 878
AciI CCGC 3 cut(s) 50, 878, 1080
AclWI GGATC 1 cut(s) 512
AcsI RAATTY 2 cut(s) 260, 334
AfaI GTAC 5 cut(s) 137, 229, 255, 383, 643
AfiI CCNNNNNNNGG 4 cut(s) 34, 45, 476, 794
AgsI TTSAA 6 cut(s) 85, 127, 378, 805, 1000, 1072
AjiI CACGTC 1 cut(s) 118
AluBI AGCT 4 cut(s) 686, 856, 896, 968
AluI AGCT 4 cut(s) 686, 856, 896, 968
Alw26I GTCTC 2 cut(s) 520, 683
AlwI GGATC 1 cut(s) 512
Ama87I CYCGRG 1 cut(s) 209
AoxI GGCC 2 cut(s) 36, 535
ApeKI GCWGC 3 cut(s) 482, 593, 728
ApoI RAATTY 2 cut(s) 260, 334
AseI ATTAAT 1 cut(s) 672
Asp700I GAANNNNTTC 1 cut(s) 981
AspS9I GGNCC 1 cut(s) 157
AsuC2I CCSGG 4 cut(s) 210, 211, 502, 549
AsuHPI GGTGA 1 cut(s) 244
AvaI CYCGRG 1 cut(s) 209
AvaII GGWCC 1 cut(s) 157
BaeGI GKGCMC 1 cut(s) 740
BbvI GCAGC 3 cut(s) 469, 605, 715
BccI CCATC 3 cut(s) 39, 470, 740
BceAI ACGGC 2 cut(s) 581, 690
BcnI CCSGG 4 cut(s) 210, 211, 502, 549
BcoDI GTCTC 2 cut(s) 520, 683
BfaI CTAG 3 cut(s) 54, 575, 584
BfmI CTRYAG 1 cut(s) 768
BisI GCNGC 5 cut(s) 51, 483, 594, 729, 1080
BlsI GCNGC 5 cut(s) 52, 484, 595, 730, 1081
Bme1390I CCNGG 4 cut(s) 210, 211, 502, 549
Bme18I GGWCC 1 cut(s) 157
BmeT110I CYCGRG 1 cut(s) 209
BmgBI CACGTC 1 cut(s) 118
BmgT120I GGNCC 1 cut(s) 157
BmiI GGNNCC 2 cut(s) 207, 394
BmrFI CCNGG 4 cut(s) 210, 211, 502, 549
BmsI GCATC 1 cut(s) 281
BpuEI CTTGAG 3 cut(s) 76, 544, 912
BpuMI CCSGG 4 cut(s) 210, 211, 502, 549
BsaJI CCNNGG 3 cut(s) 209, 609, 732
BsaXI ACNNNNNCTCC 2 cut(s) 264, 294
Bsc4I CCNNNNNNNGG 4 cut(s) 34, 45, 476, 794
Bse1I ACTGG 2 cut(s) 109, 876
Bse3DI GCAATG 1 cut(s) 1014
BseDI CCNNGG 3 cut(s) 209, 609, 732
BseGI GGATG 3 cut(s) 50, 296, 751
BseLI CCNNNNNNNGG 4 cut(s) 34, 45, 476, 794
BseMI GCAATG 1 cut(s) 1014
BseNI ACTGG 2 cut(s) 109, 876
BseRI GAGGAG 1 cut(s) 477
BseSI GKGCMC 1 cut(s) 740
BseXI GCAGC 3 cut(s) 469, 605, 715
Bsh1236I CGCG 1 cut(s) 878
BshFI GGCC 2 cut(s) 38, 537
BsiHKCI CYCGRG 1 cut(s) 209
BsiSI CCGG 3 cut(s) 210, 501, 549
BslI CCNNNNNNNGG 4 cut(s) 34, 45, 476, 794
BsmAI GTCTC 2 cut(s) 520, 683
BsmBI CGTCTC 1 cut(s) 683
BsnI GGCC 2 cut(s) 38, 537
BsoBI CYCGRG 1 cut(s) 209
Bsp1286I GDGCHC 1 cut(s) 740
Bsp143I GATC 2 cut(s) 504, 715
Bsp19I CCATGG 1 cut(s) 732
BspACI CCGC 3 cut(s) 50, 878, 1080
BspANI GGCC 2 cut(s) 38, 537
BspFNI CGCG 1 cut(s) 878
BspLI GGNNCC 2 cut(s) 207, 394
BspMAI CTGCAG 1 cut(s) 772
BspPI GGATC 1 cut(s) 512
BsrDI GCAATG 1 cut(s) 1014
BsrI ACTGG 2 cut(s) 109, 876
BssECI CCNNGG 3 cut(s) 209, 609, 732
BssMI GATC 2 cut(s) 504, 715
BssT1I CCWWGG 2 cut(s) 609, 732
Bst4CI ACNGT 4 cut(s) 140, 232, 634, 763
BstC8I GCNNGC 2 cut(s) 949, 953
BstDSI CCRYGG 1 cut(s) 732
BstF5I GGATG 3 cut(s) 50, 296, 751
BstFNI CGCG 1 cut(s) 878
BstKTI GATC 2 cut(s) 507, 718
BstMAI GTCTC 2 cut(s) 520, 683
BstMBI GATC 2 cut(s) 504, 715
BstMWI GCNNNNNNNGC 1 cut(s) 853
BstNSI RCATGY 1 cut(s) 593
BstSCI CCNGG 4 cut(s) 208, 209, 500, 547
BstSFI CTRYAG 1 cut(s) 768
BstSLI GKGCMC 1 cut(s) 740
BstUI CGCG 1 cut(s) 878
BstV1I GCAGC 3 cut(s) 469, 605, 715
BstXI CCANNNNNNTGG 1 cut(s) 337
BsuRI GGCC 2 cut(s) 38, 537
BtgI CCRYGG 1 cut(s) 732
BtrI CACGTC 1 cut(s) 118
BtsCI GGATG 3 cut(s) 50, 296, 751
BtsIMutI CAGTG 2 cut(s) 639, 869
Cac8I GCNNGC 2 cut(s) 949, 953
Cfr13I GGNCC 1 cut(s) 157
Cfr9I CCCGGG 1 cut(s) 209
CseI GACGC 1 cut(s) 1004
Csp6I GTAC 5 cut(s) 136, 228, 254, 382, 642
CviAII CATG 8 cut(s) 215, 386, 397, 404, 424, 533, 590, 733
CviQI GTAC 5 cut(s) 136, 228, 254, 382, 642
DpnI GATC 2 cut(s) 506, 717
DpnII GATC 2 cut(s) 504, 715
DraI TTTAAA 2 cut(s) 265, 918
Eco130I CCWWGG 2 cut(s) 609, 732
Eco147I AGGCCT 1 cut(s) 38
Eco47I GGWCC 1 cut(s) 157
Eco88I CYCGRG 1 cut(s) 209
EcoT14I CCWWGG 2 cut(s) 609, 732
EcoT22I ATGCAT 1 cut(s) 558
ErhI CCWWGG 2 cut(s) 609, 732
Esp3I CGTCTC 1 cut(s) 683
FaeI CATG 8 cut(s) 218, 389, 400, 407, 427, 536, 593, 736
FalI AAGNNNNNCTT 2 cut(s) 23, 55
FatI CATG 8 cut(s) 214, 385, 396, 403, 423, 532, 589, 732
FauI CCCGC 1 cut(s) 871
Fnu4HI GCNGC 5 cut(s) 51, 483, 594, 729, 1080
FokI GGATG 3 cut(s) 57, 303, 758
Fsp4HI GCNGC 5 cut(s) 51, 483, 594, 729, 1080
FspBI CTAG 3 cut(s) 54, 575, 584
GluI GCNGC 5 cut(s) 51, 483, 594, 729, 1080
HaeIII GGCC 2 cut(s) 38, 537
HapII CCGG 3 cut(s) 210, 501, 549
HgaI GACGC 1 cut(s) 1004
Hin1II CATG 8 cut(s) 218, 389, 400, 407, 427, 536, 593, 736
HinfI GANTC 2 cut(s) 59, 689
HpaII CCGG 3 cut(s) 210, 501, 549
HphI GGTGA 1 cut(s) 244
Hpy166II GTNNAC 3 cut(s) 710, 775, 836
Hpy188I TCNGA 2 cut(s) 157, 418
Hpy188III TCNNGA 5 cut(s) 14, 93, 458, 473, 929
Hpy8I GTNNAC 3 cut(s) 710, 775, 836
HpyAV CCTTC 6 cut(s) 28, 90, 91, 170, 652, 718
HpyCH4III ACNGT 4 cut(s) 140, 232, 634, 763
HpyCH4IV ACGT 1 cut(s) 117
HpyCH4V TGCA 5 cut(s) 556, 593, 770, 906, 947
HpyF10VI GCNNNNNNNGC 1 cut(s) 853
HpySE526I ACGT 1 cut(s) 117
Hsp92II CATG 8 cut(s) 218, 389, 400, 407, 427, 536, 593, 736
Kzo9I GATC 2 cut(s) 504, 715
LmnI GCTCC 2 cut(s) 490, 1012
Lsp1109I GCAGC 3 cut(s) 469, 605, 715
LweI GCATC 1 cut(s) 281
MaeI CTAG 3 cut(s) 54, 575, 584
MaeII ACGT 1 cut(s) 117
MaeIII GTNAC 4 cut(s) 100, 118, 232, 628
MalI GATC 2 cut(s) 506, 717
MboI GATC 2 cut(s) 504, 715
MboII GAAGA 3 cut(s) 43, 674, 898
MfeI CAATTG 1 cut(s) 987
MhlI GDGCHC 1 cut(s) 740
MluCI AATT 6 cut(s) 260, 322, 334, 669, 861, 987
MmeI TCCRAC 2 cut(s) 250, 268
MnlI CCTC 7 cut(s) 210, 480, 498, 655, 789, 875, 905
Mph1103I ATGCAT 1 cut(s) 558
MroXI GAANNNNTTC 1 cut(s) 981
MseI TTAA 5 cut(s) 264, 624, 672, 917, 1084
MslI CAYNNNNRTG 2 cut(s) 425, 561
MspA1I CMGCKG 1 cut(s) 968
MspI CCGG 3 cut(s) 210, 501, 549
MspR9I CCNGG 4 cut(s) 210, 211, 502, 549
MunI CAATTG 1 cut(s) 987
MvnI CGCG 1 cut(s) 878
MwoI GCNNNNNNNGC 1 cut(s) 853
NciI CCSGG 4 cut(s) 210, 211, 502, 549
NcoI CCATGG 1 cut(s) 732
NdeII GATC 2 cut(s) 504, 715
NlaIII CATG 8 cut(s) 218, 389, 400, 407, 427, 536, 593, 736
NlaIV GGNNCC 2 cut(s) 207, 394
NmuCI GTSAC 3 cut(s) 118, 232, 628
NsiI ATGCAT 1 cut(s) 558
NspI RCATGY 1 cut(s) 593
PceI AGGCCT 1 cut(s) 38
PdmI GAANNNNTTC 1 cut(s) 981
PfeI GAWTC 2 cut(s) 59, 689
PkrI GCNGC 5 cut(s) 52, 484, 595, 730, 1081
PshBI ATTAAT 1 cut(s) 672
PspN4I GGNNCC 2 cut(s) 207, 394
PspPI GGNCC 1 cut(s) 157
PstI CTGCAG 1 cut(s) 772
PvuII CAGCTG 1 cut(s) 968
RsaI GTAC 5 cut(s) 137, 229, 255, 383, 643
RsaNI GTAC 5 cut(s) 136, 228, 254, 382, 642
RseI CAYNNNNRTG 2 cut(s) 425, 561
SaqAI TTAA 5 cut(s) 264, 624, 672, 917, 1084
SatI GCNGC 5 cut(s) 51, 483, 594, 729, 1080
Sau3AI GATC 2 cut(s) 504, 715
Sau96I GGNCC 1 cut(s) 157
ScrFI CCNGG 4 cut(s) 210, 211, 502, 549
SduI GDGCHC 1 cut(s) 740
SfaNI GCATC 1 cut(s) 281
SfcI CTRYAG 1 cut(s) 768
SinI GGWCC 1 cut(s) 157
SmaI CCCGGG 1 cut(s) 211
SmiMI CAYNNNNRTG 2 cut(s) 425, 561
SmlI CTYRAG 3 cut(s) 91, 523, 927
SmoI CTYRAG 3 cut(s) 91, 523, 927
Sse9I AATT 6 cut(s) 260, 322, 334, 669, 861, 987
SseBI AGGCCT 1 cut(s) 38
SsiI CCGC 3 cut(s) 50, 878, 1080
SspMI CTAG 3 cut(s) 54, 575, 584
StuI AGGCCT 1 cut(s) 38
StyD4I CCNGG 4 cut(s) 208, 209, 500, 547
StyI CCWWGG 2 cut(s) 609, 732
TaaI ACNGT 4 cut(s) 140, 232, 634, 763
TaiI ACGT 1 cut(s) 120
TaqI TCGA 2 cut(s) 975, 1053
TasI AATT 6 cut(s) 260, 322, 334, 669, 861, 987
TatI WGTACW 2 cut(s) 135, 253
TauI GCSGC 2 cut(s) 53, 1082
TfiI GAWTC 2 cut(s) 59, 689
Tru1I TTAA 5 cut(s) 264, 624, 672, 917, 1084
Tru9I TTAA 5 cut(s) 264, 624, 672, 917, 1084
TscAI CASTG 2 cut(s) 639, 876
TseFI GTSAC 3 cut(s) 118, 232, 628
TseI GCWGC 3 cut(s) 482, 593, 728
Tsp45I GTSAC 3 cut(s) 118, 232, 628
TspDTI ATGAA 5 cut(s) 433, 450, 521, 681, 737
TspGWI ACGGA 2 cut(s) 405, 440
TspMI CCCGGG 1 cut(s) 209
TspRI CASTG 2 cut(s) 639, 876
VpaK11BI GGWCC 1 cut(s) 157
VspI ATTAAT 1 cut(s) 672
XapI RAATTY 2 cut(s) 260, 334
XceI RCATGY 1 cut(s) 593
XcmI CCANNNNNNNNNTGG 1 cut(s) 739
XmaI CCCGGG 1 cut(s) 209
XmnI GAANNNNTTC 1 cut(s) 981
XspI CTAG 3 cut(s) 54, 575, 584
Zsp2I ATGCAT 1 cut(s) 558
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.