RLG00000017824

Dehydrogenase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0000167
Physical Location & Seq
Reverse (-)
21736851 .. 21739375
2525 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000017824

Sequence Viewer

Length: 546 bp
ATGGCTGTGACCAAGACTAGGACGAGTAGCTTCTCTCGCAGTTTTTCGGGTGCAAGCTACCTCAAATCCCAAGACTCAATCATGGACCCAATGGGACAATGTTTGTGTCATCTGGGATTCCAGAACTTGACATGCAAAATATTAGGTGGCAAGGTTATTAATCCTTGCTTAAGAAGAAGTTTAGGTGGCAGTGTTCTAATGGCTGCCATTGGTACCATGGATGGGATCATTGACACAGTTTCTGCACAATATCCTGTCTTGCCTTTGGTTGGTCTGTTGAACTCTCATGGAAAGCTTGTTATTGTTGGTGCACCAGTAAAGCCTCTTGAGCTTCCGGTTTTTCCGTTACTCATGGCTGGTAGCGGCATTGGAGGTATGAAGGAGACCCAAGAGTTAATCGATTTTGCAGTAAAGCACAACATAACAGCAGACATCGAGGTTATCCCAATTGACCACTTGAACACTGCCATGGAGCGCCTTGCCAAAGCAGACGTCAGATACCGTTTTTTCATTGACATTGGAAACACACTGAAGGCTAGCTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
ADH_N ADH_zinc_N

Protein Analysis

182

Amino Acids

19.38

Weight (kDa)

8.72

Isoelectric Point (pI)

33.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000167)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G37980 AT4G37980 AT4G37990
fragaria_vesca FvH4_1g19210 FvH4_1g19220 FvH4_1g19240 FvH4_1g19240 FvH4_1g19261 FvH4_1g19262 FvH4_1g19263 FvH4_1g19263 FvH4_1g19265 FvH4_1g19281 FvH4_1g19281 FvH4_7g07240 FvH4_7g07240 FvH4_7g07240
malus_domestica MD01G1042500.v1.1 MD01G1042600.v1.1 MD01G1042800.v1.1 MD01G1042900.v1.1 MD05G1034100.v1.1 MD10G1035900.v1.1 MD10G1036000.v1.1 MD10G1155000.v1.1 MD10G1155100.v1.1 MD10G1155200.v1.1 MD10G1155400.v1.1 MD10G1155700.v1.1 MD10G1155800.v1.1 MD15G1308800.v1.1 MD15G1308900.v1.1
prunus_persica Prupe.6G205600_v2.0.a1 Prupe.6G205700_v2.0.a1 Prupe.6G205800_v2.0.a1 Prupe.6G205900_v2.0.a1 Prupe.6G206300_v2.0.a1 Prupe.6G206800_v2.0.a1 Prupe.6G207100_v2.0.a1 Prupe.6G207200_v2.0.a1 Prupe.6G207300_v2.0.a1 Prupe.6G207400_v2.0.a1 Prupe.6G207500_v2.0.a1 Prupe.6G207600_v2.0.a1 Prupe.6G207700_v2.0.a1 Prupe.6G207900_v2.0.a1
pyrus_communis pycom01g06970 pycom01g06980 pycom01g06990 pycom05g02460 pycom08g00750 pycom10g13410 pycom15g27310 pycom15g27320
rosa_chinensis RchiOBHm_Chr1g0314861 RchiOBHm_Chr1g0345441 RchiOBHm_Chr1g0345451 RchiOBHm_Chr1g0345621 RchiOBHm_Chr1g0345751 RchiOBHm_Chr1g0345861 RchiOBHm_Chr1g0345871 RchiOBHm_Chr1g0345891 RchiOBHm_Chr2g0094851 RchiOBHm_Chr2g0110471 RchiOBHm_Chr2g0110511 RchiOBHm_Chr2g0110531 RchiOBHm_Chr2g0110541 RchiOBHm_Chr2g0110571 RchiOBHm_Chr5g0039381 RchiOBHm_Chr5g0039391 RchiOBHm_Chr6g0270311 RchiOBHm_Chr6g0270331 RchiOBHm_Chr6g0270411 RchiOBHm_Chr6g0270431
rosa_laevigata RLG00000000515 RLG00000013793 RLG00000013797 RLG00000013799 RLG00000016525 RLG00000017808 RLG00000017811 RLG00000017813 RLG00000017816 RLG00000017819 RLG00000017822 RLG00000017824 RLG00000017825 RLG00000028835
rosa_multiflora Rmu_co8225458.1_g000001 Rmu_sc0000389.1_g000006 Rmu_sc0000389.1_g000014 Rmu_sc0000389.1_g000023 Rmu_sc0001292.1_g000012 Rmu_sc0001292.1_g000026 Rmu_sc0002145.1_g000003 Rmu_sc0002329.1_g000033 Rmu_sc0002833.1_g000044 Rmu_sc0004316.1_g000012 Rmu_sc0004439.1_g000003 Rmu_sc0006422.1_g000028 Rmu_sc0009479.1_g000012 Rmu_sc0010489.1_g000009 Rmu_sc0010489.1_g000010 Rmu_sc0017837.1_g000003 Rmu_sc0032320.1_g000001
rosa_roxburghii Rroxscaffold_1G00050770 Rroxscaffold_2G00133110 Rroxscaffold_2G00133140 Rroxscaffold_2G00133200 Rroxscaffold_2G00133270 Rroxscaffold_2G00133290 Rroxscaffold_2G00133300 Rroxscaffold_2G00133350 Rroxscaffold_4G00292490 Rroxscaffold_4G00309020 Rroxscaffold_4G00331740 Rroxscaffold_4G00331800 Rroxscaffold_6G00404470 Rroxscaffold_7G00197950 Rroxscaffold_7G00197990 Rroxscaffold_7G00198020
rosa_rugosa Rorug01G0002500 Rorug02G0047200 Rorug02G0047300 Rorug02G0047300 Rorug02G0047400 Rorug02G0168000 Rorug02G0168000 Rorug02G0168100 Rorug02G0168100 Rorug02G0168400.1 Rorug03G0157600 Rorug03G0157700 Rorug05G0112600 Rorug06G0054600 Rorug06G0054700
rosa_samantha Rh1AG013300 Rh1AG195600 Rh1AG195700 Rh1AG196000 Rh1BG004900 Rh1BG114300 Rh2AG132300 Rh2BG095500 Rh2BG229700 Rh2BG229800 Rh2CG097400 Rh2CG221500 Rh2CG221800 Rh2CG222100 Rh2CG222200 Rh2CG222500 Rh2CG222600 Rh2CG345000 Rh5BG269700 Rh6AG172900 Rh6AG173100 Rh6CG080500 Rh6DG075900 Rh6DG164700 Rh6DG164900 Rh6DG165200 Rh6DG165300
rosa_wichuraiana Rw0G015390 Rw1G000600 Rw1G016130 Rw1G016190 Rw2G007140 Rw2G016970 Rw2G016990 Rw2G017000 Rw3G018910 Rw3G018920 Rw3G018930 Rw5G024830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 495
Acc65I GGTACC 1 cut(s) 212
AccB1I GGYRCC 1 cut(s) 212
AciI CCGC 1 cut(s) 363
AclWI GGATC 1 cut(s) 233
AcyI GRCGYC 1 cut(s) 492
AfaI GTAC 1 cut(s) 214
AfiI CCNNNNNNNGG 3 cut(s) 18, 222, 269
AflII CTTAAG 1 cut(s) 169
AgsI TTSAA 2 cut(s) 280, 460
AluBI AGCT 5 cut(s) 30, 57, 295, 331, 540
AluI AGCT 5 cut(s) 30, 57, 295, 331, 540
Alw21I GWGCWC 1 cut(s) 313
Alw26I GTCTC 1 cut(s) 377
Alw44I GTGCAC 1 cut(s) 309
AlwI GGATC 1 cut(s) 233
AlwNI CAGNNNCTG 1 cut(s) 242
ApaLI GTGCAC 1 cut(s) 309
ApeKI GCWGC 1 cut(s) 203
ArsI GACNNNNNNTTYG 2 cut(s) 477, 509
AseI ATTAAT 1 cut(s) 159
Asp718I GGTACC 1 cut(s) 212
AspLEI GCGC 1 cut(s) 477
AspS9I GGNCC 1 cut(s) 85
AsuNHI GCTAGC 1 cut(s) 536
AvaII GGWCC 1 cut(s) 85
BaeGI GKGCMC 1 cut(s) 313
BanI GGYRCC 1 cut(s) 212
Bbv12I GWGCWC 1 cut(s) 313
BbvI GCAGC 1 cut(s) 190
BccI CCATC 1 cut(s) 215
BcoDI GTCTC 1 cut(s) 377
BfaI CTAG 2 cut(s) 18, 537
BfoI RGCGCY 1 cut(s) 478
BfrI CTTAAG 1 cut(s) 169
BisI GCNGC 2 cut(s) 204, 364
BlsI GCNGC 2 cut(s) 205, 365
Bme18I GGWCC 1 cut(s) 85
BmgT120I GGNCC 1 cut(s) 85
BmiI GGNNCC 2 cut(s) 87, 214
BmtI GCTAGC 1 cut(s) 540
BpuEI CTTGAG 1 cut(s) 347
Bsa29I ATCGAT 1 cut(s) 399
BsaHI GRCGYC 1 cut(s) 492
BsaI GGTCTC 1 cut(s) 377
BsaJI CCNNGG 2 cut(s) 216, 468
BsaWI WCCGGW 1 cut(s) 334
Bsc4I CCNNNNNNNGG 3 cut(s) 18, 222, 269
Bse1I ACTGG 1 cut(s) 314
BseCI ATCGAT 1 cut(s) 399
BseDI CCNNGG 2 cut(s) 216, 468
BseGI GGATG 1 cut(s) 226
BseLI CCNNNNNNNGG 3 cut(s) 18, 222, 269
BseNI ACTGG 1 cut(s) 314
BseSI GKGCMC 1 cut(s) 313
BseXI GCAGC 1 cut(s) 190
BsgI GTGCAG 1 cut(s) 228
BshNI GGYRCC 1 cut(s) 212
BshVI ATCGAT 1 cut(s) 399
BsiHKAI GWGCWC 1 cut(s) 313
BsiSI CCGG 1 cut(s) 335
BslFI GGGAC 1 cut(s) 108
BslI CCNNNNNNNGG 3 cut(s) 18, 222, 269
BsmAI GTCTC 1 cut(s) 377
BsmFI GGGAC 1 cut(s) 108
Bso31I GGTCTC 1 cut(s) 377
Bsp1286I GDGCHC 1 cut(s) 313
Bsp143I GATC 1 cut(s) 225
Bsp19I CCATGG 2 cut(s) 216, 468
BspACI CCGC 1 cut(s) 363
BspDI ATCGAT 1 cut(s) 399
BspLI GGNNCC 2 cut(s) 87, 214
BspOI GCTAGC 1 cut(s) 540
BspPI GGATC 1 cut(s) 233
BspT107I GGYRCC 1 cut(s) 212
BspTI CTTAAG 1 cut(s) 169
BspTNI GGTCTC 1 cut(s) 377
BsrI ACTGG 1 cut(s) 314
BssECI CCNNGG 2 cut(s) 216, 468
BssMI GATC 1 cut(s) 225
BssNI GRCGYC 1 cut(s) 492
BssT1I CCWWGG 2 cut(s) 216, 468
Bst4CI ACNGT 2 cut(s) 238, 503
BstACI GRCGYC 1 cut(s) 492
BstAFI CTTAAG 1 cut(s) 169
BstC8I GCNNGC 2 cut(s) 55, 538
BstDSI CCRYGG 2 cut(s) 216, 468
BstF5I GGATG 1 cut(s) 226
BstH2I RGCGCY 1 cut(s) 478
BstHHI GCGC 1 cut(s) 477
BstKTI GATC 1 cut(s) 228
BstMAI GTCTC 1 cut(s) 377
BstMBI GATC 1 cut(s) 225
BstMWI GCNNNNNNNGC 2 cut(s) 36, 328
BstNSI RCATGY 1 cut(s) 135
BstSLI GKGCMC 1 cut(s) 313
BstV1I GCAGC 1 cut(s) 190
Bsu15I ATCGAT 1 cut(s) 399
BsuTUI ATCGAT 1 cut(s) 399
BtgI CCRYGG 2 cut(s) 216, 468
BtsCI GGATG 1 cut(s) 226
BtsI GCAGTG 2 cut(s) 196, 462
BtsIMutI CAGTG 3 cut(s) 196, 462, 527
Cac8I GCNNGC 2 cut(s) 55, 538
CaiI CAGNNNCTG 1 cut(s) 242
CfoI GCGC 1 cut(s) 477
Cfr13I GGNCC 1 cut(s) 85
ClaI ATCGAT 1 cut(s) 399
Csp6I GTAC 1 cut(s) 213
CviAII CATG 6 cut(s) 82, 132, 217, 287, 352, 469
CviQI GTAC 1 cut(s) 213
DpnI GATC 1 cut(s) 227
DpnII GATC 1 cut(s) 225
Eco130I CCWWGG 2 cut(s) 216, 468
Eco31I GGTCTC 1 cut(s) 377
Eco47I GGWCC 1 cut(s) 85
EcoT14I CCWWGG 2 cut(s) 216, 468
ErhI CCWWGG 2 cut(s) 216, 468
FaeI CATG 6 cut(s) 85, 135, 220, 290, 355, 472
FaiI YATR 8 cut(s) 83, 133, 218, 288, 353, 377, 422, 470
FaqI GGGAC 1 cut(s) 108
FatI CATG 6 cut(s) 81, 131, 216, 286, 351, 468
Fnu4HI GCNGC 2 cut(s) 204, 364
FokI GGATG 1 cut(s) 233
Fsp4HI GCNGC 2 cut(s) 204, 364
FspBI CTAG 2 cut(s) 18, 537
GlaI GCGC 1 cut(s) 476
GluI GCNGC 2 cut(s) 204, 364
HaeII RGCGCY 1 cut(s) 478
HapII CCGG 1 cut(s) 335
HhaI GCGC 1 cut(s) 477
Hin1I GRCGYC 1 cut(s) 492
Hin1II CATG 6 cut(s) 85, 135, 220, 290, 355, 472
Hin6I GCGC 1 cut(s) 475
HinP1I GCGC 1 cut(s) 475
HindIII AAGCTT 1 cut(s) 293
HinfI GANTC 2 cut(s) 74, 117
HpaII CCGG 1 cut(s) 335
Hpy166II GTNNAC 1 cut(s) 311
Hpy188I TCNGA 1 cut(s) 497
Hpy188III TCNNGA 2 cut(s) 121, 326
Hpy8I GTNNAC 1 cut(s) 311
HpyAV CCTTC 2 cut(s) 373, 526
HpyCH4III ACNGT 2 cut(s) 238, 503
HpyCH4IV ACGT 1 cut(s) 492
HpyCH4V TGCA 5 cut(s) 53, 135, 245, 311, 407
HpyF10VI GCNNNNNNNGC 2 cut(s) 36, 328
HpySE526I ACGT 1 cut(s) 492
Hsp92I GRCGYC 1 cut(s) 492
Hsp92II CATG 6 cut(s) 85, 135, 220, 290, 355, 472
HspAI GCGC 1 cut(s) 475
KpnI GGTACC 1 cut(s) 216
Kzo9I GATC 1 cut(s) 225
LmnI GCTCC 1 cut(s) 472
LpnPI CCDG 6 cut(s) 98, 134, 267, 327, 342, 348
Lsp1109I GCAGC 1 cut(s) 190
MaeI CTAG 2 cut(s) 18, 537
MaeII ACGT 1 cut(s) 492
MaeIII GTNAC 2 cut(s) 7, 345
MalI GATC 1 cut(s) 227
MboI GATC 1 cut(s) 225
MboII GAAGA 1 cut(s) 186
MfeI CAATTG 1 cut(s) 447
MhlI GDGCHC 1 cut(s) 313
MluCI AATT 1 cut(s) 447
MlyI GAGTC 1 cut(s) 68
MnlI CCTC 4 cut(s) 71, 333, 365, 430
MseI TTAA 4 cut(s) 159, 170, 395, 544
MslI CAYNNNNRTG 1 cut(s) 467
MspCI CTTAAG 1 cut(s) 169
MspI CCGG 1 cut(s) 335
MunI CAATTG 1 cut(s) 447
MwoI GCNNNNNNNGC 2 cut(s) 36, 328
NcoI CCATGG 2 cut(s) 216, 468
NdeII GATC 1 cut(s) 225
NheI GCTAGC 1 cut(s) 536
NlaIII CATG 6 cut(s) 85, 135, 220, 290, 355, 472
NlaIV GGNNCC 2 cut(s) 87, 214
NmuCI GTSAC 1 cut(s) 7
NspI RCATGY 1 cut(s) 135
PfeI GAWTC 1 cut(s) 117
PkrI GCNGC 2 cut(s) 205, 365
PleI GAGTC 1 cut(s) 68
PpsI GAGTC 1 cut(s) 68
PshBI ATTAAT 1 cut(s) 159
PspN4I GGNNCC 2 cut(s) 87, 214
PspPI GGNCC 1 cut(s) 85
PstNI CAGNNNCTG 1 cut(s) 242
RsaI GTAC 1 cut(s) 214
RsaNI GTAC 1 cut(s) 213
RseI CAYNNNNRTG 1 cut(s) 467
SaqAI TTAA 4 cut(s) 159, 170, 395, 544
SatI GCNGC 2 cut(s) 204, 364
Sau3AI GATC 1 cut(s) 225
Sau96I GGNCC 1 cut(s) 85
SchI GAGTC 1 cut(s) 68
SduI GDGCHC 1 cut(s) 313
SinI GGWCC 1 cut(s) 85
SmiMI CAYNNNNRTG 1 cut(s) 467
SmlI CTYRAG 2 cut(s) 169, 326
SmoI CTYRAG 2 cut(s) 169, 326
Sse9I AATT 1 cut(s) 447
SsiI CCGC 1 cut(s) 363
SspI AATATT 1 cut(s) 141
SspMI CTAG 2 cut(s) 18, 537
StyI CCWWGG 2 cut(s) 216, 468
TaaI ACNGT 2 cut(s) 238, 503
TaiI ACGT 1 cut(s) 495
TaqI TCGA 2 cut(s) 399, 435
TasI AATT 1 cut(s) 447
TauI GCSGC 1 cut(s) 366
TfiI GAWTC 1 cut(s) 117
Tru1I TTAA 4 cut(s) 159, 170, 395, 544
Tru9I TTAA 4 cut(s) 159, 170, 395, 544
TscAI CASTG 3 cut(s) 196, 469, 534
TseFI GTSAC 1 cut(s) 7
TseI GCWGC 1 cut(s) 203
Tsp45I GTSAC 1 cut(s) 7
TspDTI ATGAA 2 cut(s) 392, 499
TspGWI ACGGA 1 cut(s) 333
TspRI CASTG 3 cut(s) 196, 469, 534
Vha464I CTTAAG 1 cut(s) 169
VneI GTGCAC 1 cut(s) 309
VpaK11BI GGWCC 1 cut(s) 85
VspI ATTAAT 1 cut(s) 159
XceI RCATGY 1 cut(s) 135
XcmI CCANNNNNNNNNTGG 1 cut(s) 214
XspI CTAG 2 cut(s) 18, 537
ZraI GACGTC 1 cut(s) 493
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.