Rmu_co8225458.1_g000001

Dehydrogenase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8225458.1
OG0000167
Physical Location & Seq
Forward (+)
1 .. 747
747 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8225458.1_g000001.1.cds

Sequence Viewer

Length: 607 bp
aaagtcggtgttggatgcttagtgggagcttgccaatcttgtgatagttgtaccgaccaccttgagaactactgccccaaaaaaatattcacgtactgtggtgccaagtactacgacggaagcaccacttatggcggtttctctgacattatggtggccgatgaacacttcatagtccgcatcccagacaacctaccacttgatagtgctgctccactcttatgtgccgggattacaacctacagccccttgagatattttggacttgacaagcccggaatgcatgtgggtgtggttggcctaggcggcttaggccacgtcgcggtgaagtttgccaaggctatgggggtgaaggttacagtgatcagtacttcccctaagaaagaggaggaagctattaaacaccttggagctgactcgtttttggttagtcgtgaccaacatcgaatgcaggctgccattggtaccatggatgggatcattgacacggtttctgcacaacatcctctcttgcctttgattggtttgttgaagtctcatggaaagcttgttatggttggtgtaccagaaaagcctcttgagcttccggtttttcctttactcacgg
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
ADH_N ADH_zinc_N

Protein Analysis

202

Amino Acids

21.53

Weight (kDa)

6.76

Isoelectric Point (pI)

32.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000167)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G37980 AT4G37980 AT4G37990
fragaria_vesca FvH4_1g19210 FvH4_1g19220 FvH4_1g19240 FvH4_1g19240 FvH4_1g19261 FvH4_1g19262 FvH4_1g19263 FvH4_1g19263 FvH4_1g19265 FvH4_1g19281 FvH4_1g19281 FvH4_7g07240 FvH4_7g07240 FvH4_7g07240
malus_domestica MD01G1042500.v1.1 MD01G1042600.v1.1 MD01G1042800.v1.1 MD01G1042900.v1.1 MD05G1034100.v1.1 MD10G1035900.v1.1 MD10G1036000.v1.1 MD10G1155000.v1.1 MD10G1155100.v1.1 MD10G1155200.v1.1 MD10G1155400.v1.1 MD10G1155700.v1.1 MD10G1155800.v1.1 MD15G1308800.v1.1 MD15G1308900.v1.1
prunus_persica Prupe.6G205600_v2.0.a1 Prupe.6G205700_v2.0.a1 Prupe.6G205800_v2.0.a1 Prupe.6G205900_v2.0.a1 Prupe.6G206300_v2.0.a1 Prupe.6G206800_v2.0.a1 Prupe.6G207100_v2.0.a1 Prupe.6G207200_v2.0.a1 Prupe.6G207300_v2.0.a1 Prupe.6G207400_v2.0.a1 Prupe.6G207500_v2.0.a1 Prupe.6G207600_v2.0.a1 Prupe.6G207700_v2.0.a1 Prupe.6G207900_v2.0.a1
pyrus_communis pycom01g06970 pycom01g06980 pycom01g06990 pycom05g02460 pycom08g00750 pycom10g13410 pycom15g27310 pycom15g27320
rosa_chinensis RchiOBHm_Chr1g0314861 RchiOBHm_Chr1g0345441 RchiOBHm_Chr1g0345451 RchiOBHm_Chr1g0345621 RchiOBHm_Chr1g0345751 RchiOBHm_Chr1g0345861 RchiOBHm_Chr1g0345871 RchiOBHm_Chr1g0345891 RchiOBHm_Chr2g0094851 RchiOBHm_Chr2g0110471 RchiOBHm_Chr2g0110511 RchiOBHm_Chr2g0110531 RchiOBHm_Chr2g0110541 RchiOBHm_Chr2g0110571 RchiOBHm_Chr5g0039381 RchiOBHm_Chr5g0039391 RchiOBHm_Chr6g0270311 RchiOBHm_Chr6g0270331 RchiOBHm_Chr6g0270411 RchiOBHm_Chr6g0270431
rosa_laevigata RLG00000000515 RLG00000013793 RLG00000013797 RLG00000013799 RLG00000016525 RLG00000017808 RLG00000017811 RLG00000017813 RLG00000017816 RLG00000017819 RLG00000017822 RLG00000017824 RLG00000017825 RLG00000028835
rosa_multiflora Rmu_co8225458.1_g000001 Rmu_sc0000389.1_g000006 Rmu_sc0000389.1_g000014 Rmu_sc0000389.1_g000023 Rmu_sc0001292.1_g000012 Rmu_sc0001292.1_g000026 Rmu_sc0002145.1_g000003 Rmu_sc0002329.1_g000033 Rmu_sc0002833.1_g000044 Rmu_sc0004316.1_g000012 Rmu_sc0004439.1_g000003 Rmu_sc0006422.1_g000028 Rmu_sc0009479.1_g000012 Rmu_sc0010489.1_g000009 Rmu_sc0010489.1_g000010 Rmu_sc0017837.1_g000003 Rmu_sc0032320.1_g000001
rosa_roxburghii Rroxscaffold_1G00050770 Rroxscaffold_2G00133110 Rroxscaffold_2G00133140 Rroxscaffold_2G00133200 Rroxscaffold_2G00133270 Rroxscaffold_2G00133290 Rroxscaffold_2G00133300 Rroxscaffold_2G00133350 Rroxscaffold_4G00292490 Rroxscaffold_4G00309020 Rroxscaffold_4G00331740 Rroxscaffold_4G00331800 Rroxscaffold_6G00404470 Rroxscaffold_7G00197950 Rroxscaffold_7G00197990 Rroxscaffold_7G00198020
rosa_rugosa Rorug01G0002500 Rorug02G0047200 Rorug02G0047300 Rorug02G0047300 Rorug02G0047400 Rorug02G0168000 Rorug02G0168000 Rorug02G0168100 Rorug02G0168100 Rorug02G0168400.1 Rorug03G0157600 Rorug03G0157700 Rorug05G0112600 Rorug06G0054600 Rorug06G0054700
rosa_samantha Rh1AG013300 Rh1AG195600 Rh1AG195700 Rh1AG196000 Rh1BG004900 Rh1BG114300 Rh2AG132300 Rh2BG095500 Rh2BG229700 Rh2BG229800 Rh2CG097400 Rh2CG221500 Rh2CG221800 Rh2CG222100 Rh2CG222200 Rh2CG222500 Rh2CG222600 Rh2CG345000 Rh5BG269700 Rh6AG172900 Rh6AG173100 Rh6CG080500 Rh6DG075900 Rh6DG164700 Rh6DG164900 Rh6DG165200 Rh6DG165300
rosa_wichuraiana Rw0G015390 Rw1G000600 Rw1G016130 Rw1G016190 Rw2G007140 Rw2G016970 Rw2G016990 Rw2G017000 Rw3G018910 Rw3G018920 Rw3G018930 Rw5G024830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 464
AccB1I GGYRCC 2 cut(s) 101, 464
AccII CGCG 1 cut(s) 323
AciI CCGC 4 cut(s) 135, 178, 306, 323
AclWI GGATC 1 cut(s) 485
AcoI YGGCCR 1 cut(s) 156
AfaI GTAC 6 cut(s) 52, 95, 110, 370, 466, 564
AfiI CCNNNNNNNGG 3 cut(s) 322, 474, 521
AgsI TTSAA 1 cut(s) 532
AjiI CACGTC 1 cut(s) 319
AjuI GAANNNNNNNTTGG 2 cut(s) 71, 103
AluBI AGCT 5 cut(s) 29, 395, 413, 547, 583
AluI AGCT 5 cut(s) 29, 395, 413, 547, 583
Alw26I GTCTC 1 cut(s) 540
AlwI GGATC 1 cut(s) 485
AoxI GGCC 3 cut(s) 156, 298, 313
ApeKI GCWGC 2 cut(s) 209, 455
Asp718I GGTACC 1 cut(s) 464
AspA2I CCTAGG 1 cut(s) 301
AsuC2I CCSGG 2 cut(s) 229, 276
AsuHPI GGTGA 2 cut(s) 337, 361
AvrII CCTAGG 1 cut(s) 301
BanI GGYRCC 2 cut(s) 101, 464
BbvI GCAGC 2 cut(s) 196, 442
BccI CCATC 1 cut(s) 467
BclI TGATCA 1 cut(s) 363
BcnI CCSGG 2 cut(s) 229, 276
BcoDI GTCTC 1 cut(s) 540
BfaI CTAG 1 cut(s) 302
BfmI CTRYAG 1 cut(s) 241
BglI GCCNNNNNGGC 1 cut(s) 306
BisI GCNGC 3 cut(s) 210, 307, 456
BlnI CCTAGG 1 cut(s) 301
BlsI GCNGC 3 cut(s) 211, 308, 457
BmcAI AGTACT 2 cut(s) 110, 370
Bme1390I CCNGG 2 cut(s) 229, 276
BmgBI CACGTC 1 cut(s) 319
BmiI GGNNCC 2 cut(s) 103, 466
BmrFI CCNGG 2 cut(s) 229, 276
BmsI GCATC 2 cut(s) 5, 189
Bpu10I CCTNAGC 1 cut(s) 310
BpuEI CTTGAG 3 cut(s) 83, 271, 599
BpuMI CCSGG 2 cut(s) 229, 276
BsaAI YACGTR 1 cut(s) 93
BsaJI CCNNGG 4 cut(s) 301, 336, 406, 468
BsaWI WCCGGW 1 cut(s) 586
Bsc4I CCNNNNNNNGG 3 cut(s) 322, 474, 521
BseDI CCNNGG 4 cut(s) 301, 336, 406, 468
BseGI GGATG 4 cut(s) 20, 180, 478, 502
BseLI CCNNNNNNNGG 3 cut(s) 322, 474, 521
BseRI GAGGAG 1 cut(s) 401
BseXI GCAGC 2 cut(s) 196, 442
BsgI GTGCAG 1 cut(s) 480
Bsh1236I CGCG 1 cut(s) 323
BshFI GGCC 3 cut(s) 158, 300, 315
BshNI GGYRCC 2 cut(s) 101, 464
BsiSI CCGG 3 cut(s) 228, 276, 587
BslI CCNNNNNNNGG 3 cut(s) 322, 474, 521
BsmAI GTCTC 1 cut(s) 540
BsmI GAATGC 2 cut(s) 285, 453
BsnI GGCC 3 cut(s) 158, 300, 315
Bsp143I GATC 2 cut(s) 363, 477
Bsp19I CCATGG 1 cut(s) 468
BspACI CCGC 4 cut(s) 135, 178, 306, 323
BspANI GGCC 3 cut(s) 158, 300, 315
BspFNI CGCG 1 cut(s) 323
BspLI GGNNCC 2 cut(s) 103, 466
BspPI GGATC 1 cut(s) 485
BspT107I GGYRCC 2 cut(s) 101, 464
BssECI CCNNGG 4 cut(s) 301, 336, 406, 468
BssMI GATC 2 cut(s) 363, 477
BssT1I CCWWGG 4 cut(s) 301, 336, 406, 468
Bst4CI ACNGT 3 cut(s) 98, 361, 490
BstBAI YACGTR 1 cut(s) 93
BstC8I GCNNGC 2 cut(s) 31, 453
BstDEI CTNAG 3 cut(s) 19, 310, 378
BstDSI CCRYGG 1 cut(s) 468
BstF5I GGATG 4 cut(s) 20, 180, 478, 502
BstFNI CGCG 1 cut(s) 323
BstKTI GATC 2 cut(s) 366, 480
BstMAI GTCTC 1 cut(s) 540
BstMBI GATC 2 cut(s) 363, 477
BstMWI GCNNNNNNNGC 4 cut(s) 280, 306, 312, 580
BstNSI RCATGY 1 cut(s) 287
BstSCI CCNGG 2 cut(s) 227, 274
BstSFI CTRYAG 1 cut(s) 241
BstUI CGCG 1 cut(s) 323
BstV1I GCAGC 2 cut(s) 196, 442
BstXI CCANNNNNNTGG 1 cut(s) 343
BsuRI GGCC 3 cut(s) 158, 300, 315
BtgI CCRYGG 1 cut(s) 468
BtrI CACGTC 1 cut(s) 319
BtsCI GGATG 4 cut(s) 20, 180, 478, 502
BtsIMutI CAGTG 1 cut(s) 366
Cac8I GCNNGC 2 cut(s) 31, 453
Csp6I GTAC 6 cut(s) 51, 94, 109, 369, 465, 563
CviAII CATG 3 cut(s) 284, 469, 539
CviQI GTAC 6 cut(s) 51, 94, 109, 369, 465, 563
DdeI CTNAG 3 cut(s) 19, 310, 378
DpnI GATC 2 cut(s) 365, 479
DpnII GATC 2 cut(s) 363, 477
EaeI YGGCCR 1 cut(s) 156
Eco130I CCWWGG 4 cut(s) 301, 336, 406, 468
EcoT14I CCWWGG 4 cut(s) 301, 336, 406, 468
EcoT22I ATGCAT 1 cut(s) 285
ErhI CCWWGG 4 cut(s) 301, 336, 406, 468
FaeI CATG 3 cut(s) 287, 472, 542
FaiI YATR 9 cut(s) 132, 152, 173, 223, 285, 344, 470, 540, 554
FalI AAGNNNNNCTT 2 cut(s) 112, 144
FatI CATG 3 cut(s) 283, 468, 538
FbaI TGATCA 1 cut(s) 363
Fnu4HI GCNGC 3 cut(s) 210, 307, 456
FokI GGATG 4 cut(s) 27, 167, 485, 489
Fsp4HI GCNGC 3 cut(s) 210, 307, 456
FspBI CTAG 1 cut(s) 302
GluI GCNGC 3 cut(s) 210, 307, 456
HaeIII GGCC 3 cut(s) 158, 300, 315
HapII CCGG 3 cut(s) 228, 276, 587
Hin1II CATG 3 cut(s) 287, 472, 542
HindIII AAGCTT 1 cut(s) 545
HinfI GANTC 1 cut(s) 416
HpaII CCGG 3 cut(s) 228, 276, 587
HphI GGTGA 2 cut(s) 337, 361
Hpy166II GTNNAC 1 cut(s) 563
Hpy188I TCNGA 1 cut(s) 145
Hpy188III TCNNGA 2 cut(s) 434, 578
Hpy8I GTNNAC 1 cut(s) 563
Hpy99I CGWCG 2 cut(s) 119, 323
HpyAV CCTTC 1 cut(s) 346
HpyCH4III ACNGT 3 cut(s) 98, 361, 490
HpyCH4IV ACGT 2 cut(s) 92, 318
HpyCH4V TGCA 3 cut(s) 283, 451, 497
HpyF10VI GCNNNNNNNGC 4 cut(s) 280, 306, 312, 580
HpyF3I CTNAG 3 cut(s) 19, 310, 378
HpySE526I ACGT 2 cut(s) 92, 318
Hsp92II CATG 3 cut(s) 287, 472, 542
KpnI GGTACC 1 cut(s) 468
Ksp22I TGATCA 1 cut(s) 363
Kzo9I GATC 2 cut(s) 363, 477
LmnI GCTCC 3 cut(s) 26, 217, 410
LpnPI CCDG 6 cut(s) 198, 241, 289, 437, 579, 600
Lsp1109I GCAGC 2 cut(s) 196, 442
LweI GCATC 2 cut(s) 5, 189
MaeI CTAG 1 cut(s) 302
MaeII ACGT 2 cut(s) 92, 318
MaeIII GTNAC 2 cut(s) 355, 434
MalI GATC 2 cut(s) 365, 479
MboI GATC 2 cut(s) 363, 477
MlyI GAGTC 1 cut(s) 410
MnlI CCTC 4 cut(s) 379, 382, 516, 585
Mph1103I ATGCAT 1 cut(s) 285
MseI TTAA 1 cut(s) 399
MslI CAYNNNNRTG 3 cut(s) 152, 220, 288
MspI CCGG 3 cut(s) 228, 276, 587
MspR9I CCNGG 2 cut(s) 229, 276
Mva1269I GAATGC 2 cut(s) 285, 453
MvnI CGCG 1 cut(s) 323
MwoI GCNNNNNNNGC 4 cut(s) 280, 306, 312, 580
NciI CCSGG 2 cut(s) 229, 276
NcoI CCATGG 1 cut(s) 468
NdeII GATC 2 cut(s) 363, 477
NlaIII CATG 3 cut(s) 287, 472, 542
NlaIV GGNNCC 2 cut(s) 103, 466
NmuCI GTSAC 1 cut(s) 434
NsiI ATGCAT 1 cut(s) 285
NspI RCATGY 1 cut(s) 287
PctI GAATGC 2 cut(s) 285, 453
PkrI GCNGC 3 cut(s) 211, 308, 457
PleI GAGTC 1 cut(s) 410
PpsI GAGTC 1 cut(s) 410
Ppu21I YACGTR 1 cut(s) 93
PspN4I GGNNCC 2 cut(s) 103, 466
RsaI GTAC 6 cut(s) 52, 95, 110, 370, 466, 564
RsaNI GTAC 6 cut(s) 51, 94, 109, 369, 465, 563
RseI CAYNNNNRTG 3 cut(s) 152, 220, 288
SaqAI TTAA 1 cut(s) 399
SatI GCNGC 3 cut(s) 210, 307, 456
Sau3AI GATC 2 cut(s) 363, 477
ScaI AGTACT 2 cut(s) 110, 370
SchI GAGTC 1 cut(s) 410
ScrFI CCNGG 2 cut(s) 229, 276
SfaNI GCATC 2 cut(s) 5, 189
SfcI CTRYAG 1 cut(s) 241
SmiMI CAYNNNNRTG 3 cut(s) 152, 220, 288
SmlI CTYRAG 3 cut(s) 62, 250, 578
SmoI CTYRAG 3 cut(s) 62, 250, 578
SsiI CCGC 4 cut(s) 135, 178, 306, 323
SspI AATATT 1 cut(s) 87
SspMI CTAG 1 cut(s) 302
StyD4I CCNGG 2 cut(s) 227, 274
StyI CCWWGG 4 cut(s) 301, 336, 406, 468
TaaI ACNGT 3 cut(s) 98, 361, 490
TaiI ACGT 2 cut(s) 95, 321
TaqI TCGA 1 cut(s) 445
TatI WGTACW 2 cut(s) 108, 368
TauI GCSGC 1 cut(s) 309
Tru1I TTAA 1 cut(s) 399
Tru9I TTAA 1 cut(s) 399
TscAI CASTG 1 cut(s) 366
TseFI GTSAC 1 cut(s) 434
TseI GCWGC 2 cut(s) 209, 455
Tsp45I GTSAC 1 cut(s) 434
TspDTI ATGAA 2 cut(s) 160, 177
TspGWI ACGGA 1 cut(s) 132
TspRI CASTG 1 cut(s) 366
XceI RCATGY 1 cut(s) 287
XcmI CCANNNNNNNNNTGG 1 cut(s) 466
XmaJI CCTAGG 1 cut(s) 301
XspI CTAG 1 cut(s) 302
ZrmI AGTACT 2 cut(s) 110, 370
Zsp2I ATGCAT 1 cut(s) 285
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.