Rh2CG097400

Dehydrogenase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0000167
Physical Location & Seq
Forward (+)
8081503 .. 8083454
1952 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG097400.1

Sequence Viewer

Length: 921 bp
ATGAGACCTCCTCAGTTGTCTAATATGAACACAATTCGGCAATGCAGCCATGAGATTGTTGGTGAAGTAACGGAAGTAGGGAGCAATGTAAAAAAATTCAAAGTTGGAGACAAAGTCGGTGTTGGATGCTTAGTGGGAGCTTGCCAATCTTGTGATAGTTGTACCGACCACCTTGAGAACTACTGCCCCAAACAAATACTCACGTACGGTGCCAAGTACTACGACGGAACCACCACCTATGGAGGTTACTCTGACATTATGGTGGCCGATGAACACTTCATAGTCCGCATCCCAAACAACCTACCGCTTGATAGTGCTGCTCCACTCCTATGTGCTGGGATTACAACCTACAGCCCCTTGAGATATTATGGACTAGACAAGCCCGGAATGCATGTGGGTGTGGTTGGCCTAGGCGGCTTAGGCCACGTCGCAGTGAAGTTTGCCAAGGCTATGGGGGTGAAGGTTACAGTGATCAGTACTTCCCCTAAGAAAGAGGAGGAAGCTATTAAACACCTTGGAGCTGACTTGTTTTTGGATAGTCGTGACCAAGATCAAATGCAGGCTGCCATTGGTACCATGGAGGGGATCATTGACACAGTTTCTGCACAACATCCTCTCTTGCCTTTGATTGGTTTGTTGAAGTCTCATGGAAAGCTTGTTATGGTTGGTGCACCAGAAAAGCCTCTTGAGCTTCCGGTTTTTCCTTTACTCATGGGAAGGAAGATGGTAGCTGGTAGCCTCATTGGAGGTATGAAGGAGACACAAGAGATGATTGATTTTGCAGCCAAGCACAACATAACAGCAGACATCGAGGTTATCCCAATTGACTACTTGAACAATGCCATGGAGCGCCTCGCCAAAGCAGATGTCAGATACCGTTTTGTCATTGACATTGGAAACACACAGAAGGCTAGCCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
ADH_N ADH_zinc_N

Protein Analysis

306

Amino Acids

33.08

Weight (kDa)

6.31

Isoelectric Point (pI)

30.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ADH_N PF08240 15 - 98 3e-15 Alcohol dehydrogenase GroES-like domain
2-Hacid_dh_C PF02826 121 - 171 4.5e-06 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
ADH_zinc_N PF00107 139 - 262 1.7e-23 Zinc-binding dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000167)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G37980 AT4G37980 AT4G37990
fragaria_vesca FvH4_1g19210 FvH4_1g19220 FvH4_1g19240 FvH4_1g19240 FvH4_1g19261 FvH4_1g19262 FvH4_1g19263 FvH4_1g19263 FvH4_1g19265 FvH4_1g19281 FvH4_1g19281 FvH4_7g07240 FvH4_7g07240 FvH4_7g07240
malus_domestica MD01G1042500.v1.1 MD01G1042600.v1.1 MD01G1042800.v1.1 MD01G1042900.v1.1 MD05G1034100.v1.1 MD10G1035900.v1.1 MD10G1036000.v1.1 MD10G1155000.v1.1 MD10G1155100.v1.1 MD10G1155200.v1.1 MD10G1155400.v1.1 MD10G1155700.v1.1 MD10G1155800.v1.1 MD15G1308800.v1.1 MD15G1308900.v1.1
prunus_persica Prupe.6G205600_v2.0.a1 Prupe.6G205700_v2.0.a1 Prupe.6G205800_v2.0.a1 Prupe.6G205900_v2.0.a1 Prupe.6G206300_v2.0.a1 Prupe.6G206800_v2.0.a1 Prupe.6G207100_v2.0.a1 Prupe.6G207200_v2.0.a1 Prupe.6G207300_v2.0.a1 Prupe.6G207400_v2.0.a1 Prupe.6G207500_v2.0.a1 Prupe.6G207600_v2.0.a1 Prupe.6G207700_v2.0.a1 Prupe.6G207900_v2.0.a1
pyrus_communis pycom01g06970 pycom01g06980 pycom01g06990 pycom05g02460 pycom08g00750 pycom10g13410 pycom15g27310 pycom15g27320
rosa_chinensis RchiOBHm_Chr1g0314861 RchiOBHm_Chr1g0345441 RchiOBHm_Chr1g0345451 RchiOBHm_Chr1g0345621 RchiOBHm_Chr1g0345751 RchiOBHm_Chr1g0345861 RchiOBHm_Chr1g0345871 RchiOBHm_Chr1g0345891 RchiOBHm_Chr2g0094851 RchiOBHm_Chr2g0110471 RchiOBHm_Chr2g0110511 RchiOBHm_Chr2g0110531 RchiOBHm_Chr2g0110541 RchiOBHm_Chr2g0110571 RchiOBHm_Chr5g0039381 RchiOBHm_Chr5g0039391 RchiOBHm_Chr6g0270311 RchiOBHm_Chr6g0270331 RchiOBHm_Chr6g0270411 RchiOBHm_Chr6g0270431
rosa_laevigata RLG00000000515 RLG00000013793 RLG00000013797 RLG00000013799 RLG00000016525 RLG00000017808 RLG00000017811 RLG00000017813 RLG00000017816 RLG00000017819 RLG00000017822 RLG00000017824 RLG00000017825 RLG00000028835
rosa_multiflora Rmu_co8225458.1_g000001 Rmu_sc0000389.1_g000006 Rmu_sc0000389.1_g000014 Rmu_sc0000389.1_g000023 Rmu_sc0001292.1_g000012 Rmu_sc0001292.1_g000026 Rmu_sc0002145.1_g000003 Rmu_sc0002329.1_g000033 Rmu_sc0002833.1_g000044 Rmu_sc0004316.1_g000012 Rmu_sc0004439.1_g000003 Rmu_sc0006422.1_g000028 Rmu_sc0009479.1_g000012 Rmu_sc0010489.1_g000009 Rmu_sc0010489.1_g000010 Rmu_sc0017837.1_g000003 Rmu_sc0032320.1_g000001
rosa_roxburghii Rroxscaffold_1G00050770 Rroxscaffold_2G00133110 Rroxscaffold_2G00133140 Rroxscaffold_2G00133200 Rroxscaffold_2G00133270 Rroxscaffold_2G00133290 Rroxscaffold_2G00133300 Rroxscaffold_2G00133350 Rroxscaffold_4G00292490 Rroxscaffold_4G00309020 Rroxscaffold_4G00331740 Rroxscaffold_4G00331800 Rroxscaffold_6G00404470 Rroxscaffold_7G00197950 Rroxscaffold_7G00197990 Rroxscaffold_7G00198020
rosa_rugosa Rorug01G0002500 Rorug02G0047200 Rorug02G0047300 Rorug02G0047300 Rorug02G0047400 Rorug02G0168000 Rorug02G0168000 Rorug02G0168100 Rorug02G0168100 Rorug02G0168400.1 Rorug03G0157600 Rorug03G0157700 Rorug05G0112600 Rorug06G0054600 Rorug06G0054700
rosa_samantha Rh1AG013300 Rh1AG195600 Rh1AG195700 Rh1AG196000 Rh1BG004900 Rh1BG114300 Rh2AG132300 Rh2BG095500 Rh2BG229700 Rh2BG229800 Rh2CG097400 Rh2CG221500 Rh2CG221800 Rh2CG222100 Rh2CG222200 Rh2CG222500 Rh2CG222600 Rh2CG345000 Rh5BG269700 Rh6AG172900 Rh6AG173100 Rh6CG080500 Rh6DG075900 Rh6DG164700 Rh6DG164900 Rh6DG165200 Rh6DG165300
rosa_wichuraiana Rw0G015390 Rw1G000600 Rw1G016130 Rw1G016190 Rw2G007140 Rw2G016970 Rw2G016990 Rw2G017000 Rw3G018910 Rw3G018920 Rw3G018930 Rw5G024830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 572
AccB1I GGYRCC 2 cut(s) 209, 572
AciI CCGC 3 cut(s) 286, 305, 414
AclWI GGATC 1 cut(s) 593
AcoI YGGCCR 1 cut(s) 264
AcsI RAATTY 1 cut(s) 95
AfaI GTAC 5 cut(s) 163, 206, 218, 478, 574
AfiI CCNNNNNNNGG 2 cut(s) 582, 629
AgsI TTSAA 3 cut(s) 100, 640, 835
AjiI CACGTC 1 cut(s) 427
AluBI AGCT 6 cut(s) 140, 503, 521, 655, 691, 731
AluI AGCT 6 cut(s) 140, 503, 521, 655, 691, 731
Alw21I GWGCWC 1 cut(s) 673
Alw26I GTCTC 3 cut(s) 102, 648, 752
Alw44I GTGCAC 1 cut(s) 669
AlwI GGATC 1 cut(s) 593
AlwNI CAGNNNCTG 1 cut(s) 602
AoxI GGCC 3 cut(s) 264, 406, 421
ApaLI GTGCAC 1 cut(s) 669
ApeKI GCWGC 4 cut(s) 45, 317, 563, 782
ApoI RAATTY 1 cut(s) 95
ArsI GACNNNNNNTTYG 2 cut(s) 852, 884
Asp718I GGTACC 1 cut(s) 572
AspA2I CCTAGG 1 cut(s) 409
AspLEI GCGC 1 cut(s) 852
AsuC2I CCSGG 1 cut(s) 384
AsuHPI GGTGA 2 cut(s) 74, 469
AsuNHI GCTAGC 1 cut(s) 911
AvrII CCTAGG 1 cut(s) 409
BaeGI GKGCMC 1 cut(s) 673
BanI GGYRCC 2 cut(s) 209, 572
Bbv12I GWGCWC 1 cut(s) 673
BbvI GCAGC 4 cut(s) 57, 304, 550, 794
BccI CCATC 1 cut(s) 718
BclI TGATCA 1 cut(s) 471
BcnI CCSGG 1 cut(s) 384
BcoDI GTCTC 3 cut(s) 102, 648, 752
BfaI CTAG 3 cut(s) 374, 410, 912
BfmI CTRYAG 1 cut(s) 349
BfoI RGCGCY 1 cut(s) 853
BglI GCCNNNNNGGC 1 cut(s) 414
BisI GCNGC 5 cut(s) 46, 318, 415, 564, 783
BlnI CCTAGG 1 cut(s) 409
BlsI GCNGC 5 cut(s) 47, 319, 416, 565, 784
BmcAI AGTACT 2 cut(s) 218, 478
Bme1390I CCNGG 1 cut(s) 384
BmgBI CACGTC 1 cut(s) 427
BmiI GGNNCC 3 cut(s) 211, 229, 574
BmrFI CCNGG 1 cut(s) 384
BmsI GCATC 2 cut(s) 116, 297
BmtI GCTAGC 1 cut(s) 915
BplI GAGNNNNNCTC 1 cut(s) 27
Bpu10I CCTNAGC 1 cut(s) 418
BpuEI CTTGAG 3 cut(s) 194, 379, 707
BpuMI CCSGG 1 cut(s) 384
BsaAI YACGTR 1 cut(s) 204
BsaJI CCNNGG 5 cut(s) 409, 444, 514, 576, 843
BsaWI WCCGGW 1 cut(s) 694
BsaXI ACNNNNNCTCC 2 cut(s) 99, 129
Bsc4I CCNNNNNNNGG 2 cut(s) 582, 629
Bse3DI GCAATG 2 cut(s) 47, 91
BseDI CCNNGG 5 cut(s) 409, 444, 514, 576, 843
BseGI GGATG 3 cut(s) 131, 288, 610
BseLI CCNNNNNNNGG 2 cut(s) 582, 629
BseMI GCAATG 2 cut(s) 47, 91
BseMII CTCAG 1 cut(s) 26
BseRI GAGGAG 1 cut(s) 509
BseSI GKGCMC 1 cut(s) 673
BseXI GCAGC 4 cut(s) 57, 304, 550, 794
BseYI CCCAGC 1 cut(s) 335
BsgI GTGCAG 1 cut(s) 588
BshFI GGCC 3 cut(s) 266, 408, 423
BshNI GGYRCC 2 cut(s) 209, 572
BsiHKAI GWGCWC 1 cut(s) 673
BsiSI CCGG 2 cut(s) 384, 695
BsiWI CGTACG 1 cut(s) 204
BslI CCNNNNNNNGG 2 cut(s) 582, 629
BsmAI GTCTC 3 cut(s) 102, 648, 752
BsmI GAATGC 1 cut(s) 393
BsnI GGCC 3 cut(s) 266, 408, 423
Bsp1286I GDGCHC 1 cut(s) 673
Bsp143I GATC 3 cut(s) 471, 550, 585
Bsp19I CCATGG 2 cut(s) 576, 843
BspACI CCGC 3 cut(s) 286, 305, 414
BspANI GGCC 3 cut(s) 266, 408, 423
BspCNI CTCAG 1 cut(s) 25
BspLI GGNNCC 3 cut(s) 211, 229, 574
BspOI GCTAGC 1 cut(s) 915
BspPI GGATC 1 cut(s) 593
BspT107I GGYRCC 2 cut(s) 209, 572
BsrDI GCAATG 2 cut(s) 47, 91
BssECI CCNNGG 5 cut(s) 409, 444, 514, 576, 843
BssMI GATC 3 cut(s) 471, 550, 585
BssT1I CCWWGG 5 cut(s) 409, 444, 514, 576, 843
Bst4CI ACNGT 4 cut(s) 209, 469, 598, 878
BstBAI YACGTR 1 cut(s) 204
BstC8I GCNNGC 3 cut(s) 142, 561, 913
BstDEI CTNAG 4 cut(s) 12, 130, 418, 486
BstDSI CCRYGG 2 cut(s) 576, 843
BstF5I GGATG 3 cut(s) 131, 288, 610
BstH2I RGCGCY 1 cut(s) 853
BstHHI GCGC 1 cut(s) 852
BstKTI GATC 3 cut(s) 474, 553, 588
BstMAI GTCTC 3 cut(s) 102, 648, 752
BstMBI GATC 3 cut(s) 471, 550, 585
BstMWI GCNNNNNNNGC 4 cut(s) 388, 414, 420, 688
BstNSI RCATGY 1 cut(s) 395
BstSCI CCNGG 1 cut(s) 382
BstSFI CTRYAG 1 cut(s) 349
BstSLI GKGCMC 1 cut(s) 673
BstV1I GCAGC 4 cut(s) 57, 304, 550, 794
BstXI CCANNNNNNTGG 1 cut(s) 451
BsuRI GGCC 3 cut(s) 266, 408, 423
BtgI CCRYGG 2 cut(s) 576, 843
BtrI CACGTC 1 cut(s) 427
BtsCI GGATG 3 cut(s) 131, 288, 610
BtsI GCAGTG 1 cut(s) 438
BtsIMutI CAGTG 2 cut(s) 438, 474
Cac8I GCNNGC 3 cut(s) 142, 561, 913
CaiI CAGNNNCTG 1 cut(s) 602
CfoI GCGC 1 cut(s) 852
Csp6I GTAC 5 cut(s) 162, 205, 217, 477, 573
CviAII CATG 6 cut(s) 50, 392, 577, 647, 712, 844
CviQI GTAC 5 cut(s) 162, 205, 217, 477, 573
DdeI CTNAG 4 cut(s) 12, 130, 418, 486
DpnI GATC 3 cut(s) 473, 552, 587
DpnII GATC 3 cut(s) 471, 550, 585
EaeI YGGCCR 1 cut(s) 264
Eco130I CCWWGG 5 cut(s) 409, 444, 514, 576, 843
EcoT14I CCWWGG 5 cut(s) 409, 444, 514, 576, 843
EcoT22I ATGCAT 1 cut(s) 393
ErhI CCWWGG 5 cut(s) 409, 444, 514, 576, 843
FaeI CATG 6 cut(s) 53, 395, 580, 650, 715, 847
FatI CATG 6 cut(s) 49, 391, 576, 646, 711, 843
FbaI TGATCA 1 cut(s) 471
Fnu4HI GCNGC 5 cut(s) 46, 318, 415, 564, 783
FokI GGATG 3 cut(s) 138, 275, 597
Fsp4HI GCNGC 5 cut(s) 46, 318, 415, 564, 783
FspBI CTAG 3 cut(s) 374, 410, 912
GlaI GCGC 1 cut(s) 851
GluI GCNGC 5 cut(s) 46, 318, 415, 564, 783
GsaI CCCAGC 1 cut(s) 339
HaeII RGCGCY 1 cut(s) 853
HaeIII GGCC 3 cut(s) 266, 408, 423
HapII CCGG 2 cut(s) 384, 695
HhaI GCGC 1 cut(s) 852
Hin1II CATG 6 cut(s) 53, 395, 580, 650, 715, 847
Hin6I GCGC 1 cut(s) 850
HinP1I GCGC 1 cut(s) 850
HindIII AAGCTT 1 cut(s) 653
HpaII CCGG 2 cut(s) 384, 695
HphI GGTGA 2 cut(s) 74, 469
Hpy166II GTNNAC 1 cut(s) 671
Hpy188I TCNGA 2 cut(s) 253, 872
Hpy188III TCNNGA 2 cut(s) 542, 686
Hpy8I GTNNAC 1 cut(s) 671
Hpy99I CGWCG 2 cut(s) 227, 431
HpyAV CCTTC 4 cut(s) 454, 711, 748, 901
HpyCH4III ACNGT 4 cut(s) 209, 469, 598, 878
HpyCH4IV ACGT 2 cut(s) 203, 426
HpyCH4V TGCA 6 cut(s) 45, 391, 559, 605, 671, 782
HpyF10VI GCNNNNNNNGC 4 cut(s) 388, 414, 420, 688
HpyF3I CTNAG 4 cut(s) 12, 130, 418, 486
HpySE526I ACGT 2 cut(s) 203, 426
Hsp92II CATG 6 cut(s) 53, 395, 580, 650, 715, 847
HspAI GCGC 1 cut(s) 850
KpnI GGTACC 1 cut(s) 576
Ksp22I TGATCA 1 cut(s) 471
Kzo9I GATC 3 cut(s) 471, 550, 585
LmnI GCTCC 5 cut(s) 81, 137, 325, 518, 847
LpnPI CCDG 6 cut(s) 321, 397, 545, 687, 708, 717
Lsp1109I GCAGC 4 cut(s) 57, 304, 550, 794
LweI GCATC 2 cut(s) 116, 297
MaeI CTAG 3 cut(s) 374, 410, 912
MaeII ACGT 2 cut(s) 203, 426
MaeIII GTNAC 4 cut(s) 67, 245, 463, 542
MalI GATC 3 cut(s) 473, 552, 587
MboI GATC 3 cut(s) 471, 550, 585
MboII GAAGA 1 cut(s) 733
MfeI CAATTG 1 cut(s) 822
MhlI GDGCHC 1 cut(s) 673
MluCI AATT 3 cut(s) 33, 95, 822
MmeI TCCRAC 2 cut(s) 85, 103
Mph1103I ATGCAT 1 cut(s) 393
MseI TTAA 2 cut(s) 507, 919
MslI CAYNNNNRTG 3 cut(s) 260, 328, 396
MspI CCGG 2 cut(s) 384, 695
MspR9I CCNGG 1 cut(s) 384
MunI CAATTG 1 cut(s) 822
Mva1269I GAATGC 1 cut(s) 393
MwoI GCNNNNNNNGC 4 cut(s) 388, 414, 420, 688
NciI CCSGG 1 cut(s) 384
NcoI CCATGG 2 cut(s) 576, 843
NdeII GATC 3 cut(s) 471, 550, 585
NheI GCTAGC 1 cut(s) 911
NlaIII CATG 6 cut(s) 53, 395, 580, 650, 715, 847
NlaIV GGNNCC 3 cut(s) 211, 229, 574
NmuCI GTSAC 1 cut(s) 542
NsiI ATGCAT 1 cut(s) 393
NspI RCATGY 1 cut(s) 395
PctI GAATGC 1 cut(s) 393
Pfl23II CGTACG 1 cut(s) 204
PflFI GACNNNGTC 1 cut(s) 113
PkrI GCNGC 5 cut(s) 47, 319, 416, 565, 784
Ppu21I YACGTR 1 cut(s) 204
PspFI CCCAGC 1 cut(s) 335
PspLI CGTACG 1 cut(s) 204
PspN4I GGNNCC 3 cut(s) 211, 229, 574
PstNI CAGNNNCTG 1 cut(s) 602
PsyI GACNNNGTC 1 cut(s) 113
RsaI GTAC 5 cut(s) 163, 206, 218, 478, 574
RsaNI GTAC 5 cut(s) 162, 205, 217, 477, 573
RseI CAYNNNNRTG 3 cut(s) 260, 328, 396
SaqAI TTAA 2 cut(s) 507, 919
SatI GCNGC 5 cut(s) 46, 318, 415, 564, 783
Sau3AI GATC 3 cut(s) 471, 550, 585
ScaI AGTACT 2 cut(s) 218, 478
ScrFI CCNGG 1 cut(s) 384
SduI GDGCHC 1 cut(s) 673
SfaNI GCATC 2 cut(s) 116, 297
SfcI CTRYAG 1 cut(s) 349
SmiMI CAYNNNNRTG 3 cut(s) 260, 328, 396
SmlI CTYRAG 3 cut(s) 173, 358, 686
SmoI CTYRAG 3 cut(s) 173, 358, 686
Sse9I AATT 3 cut(s) 33, 95, 822
SsiI CCGC 3 cut(s) 286, 305, 414
SspMI CTAG 3 cut(s) 374, 410, 912
StyD4I CCNGG 1 cut(s) 382
StyI CCWWGG 5 cut(s) 409, 444, 514, 576, 843
TaaI ACNGT 4 cut(s) 209, 469, 598, 878
TaiI ACGT 2 cut(s) 206, 429
TaqI TCGA 1 cut(s) 810
TasI AATT 3 cut(s) 33, 95, 822
TatI WGTACW 2 cut(s) 216, 476
TauI GCSGC 1 cut(s) 417
Tru1I TTAA 2 cut(s) 507, 919
Tru9I TTAA 2 cut(s) 507, 919
TscAI CASTG 2 cut(s) 438, 474
TseFI GTSAC 1 cut(s) 542
TseI GCWGC 4 cut(s) 45, 317, 563, 782
Tsp45I GTSAC 1 cut(s) 542
TspDTI ATGAA 4 cut(s) 41, 268, 285, 767
TspGWI ACGGA 2 cut(s) 86, 240
TspRI CASTG 2 cut(s) 438, 474
Tth111I GACNNNGTC 1 cut(s) 113
VneI GTGCAC 1 cut(s) 669
XapI RAATTY 1 cut(s) 95
XceI RCATGY 1 cut(s) 395
XcmI CCANNNNNNNNNTGG 2 cut(s) 56, 574
XmaJI CCTAGG 1 cut(s) 409
XspI CTAG 3 cut(s) 374, 410, 912
ZrmI AGTACT 2 cut(s) 218, 478
Zsp2I ATGCAT 1 cut(s) 393
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.