Rorug01G0002500

Dehydrogenase

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
Physical Location & Seq
Forward (+)
553823 .. 554430
608 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0002500.1

Sequence Viewer

Length: 279 bp
ATGGAATTGAGCTTAGCAGATACGTTGGTGAAGGTAGCCCTGTTTTTCCTGGTTCAGGGTTTGGTGTATCTCATCCTTTCCAAGTCATCAAACATCTTCTCCTCCAAATCCAACATGATGAGATCCCATAGCTTCAAACCAGCTCGCTCTGTAAGTATTCGTCGCATGCTCGCCACTCTTGCCGACTTACCCGCCGGTGGTGAGCTCTCTCCTTCATCCAGGGACCTGCGTTCGCCCGATTACCAACAAAATTCAAACTCCAGCCTACATCTCAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

92

Amino Acids

10.14

Weight (kDa)

9.98

Isoelectric Point (pI)

60.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000167)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G37980 AT4G37980 AT4G37990
fragaria_vesca FvH4_1g19210 FvH4_1g19220 FvH4_1g19240 FvH4_1g19240 FvH4_1g19261 FvH4_1g19262 FvH4_1g19263 FvH4_1g19263 FvH4_1g19265 FvH4_1g19281 FvH4_1g19281 FvH4_7g07240 FvH4_7g07240 FvH4_7g07240
malus_domestica MD01G1042500.v1.1 MD01G1042600.v1.1 MD01G1042800.v1.1 MD01G1042900.v1.1 MD05G1034100.v1.1 MD10G1035900.v1.1 MD10G1036000.v1.1 MD10G1155000.v1.1 MD10G1155100.v1.1 MD10G1155200.v1.1 MD10G1155400.v1.1 MD10G1155700.v1.1 MD10G1155800.v1.1 MD15G1308800.v1.1 MD15G1308900.v1.1
prunus_persica Prupe.6G205600_v2.0.a1 Prupe.6G205700_v2.0.a1 Prupe.6G205800_v2.0.a1 Prupe.6G205900_v2.0.a1 Prupe.6G206300_v2.0.a1 Prupe.6G206800_v2.0.a1 Prupe.6G207100_v2.0.a1 Prupe.6G207200_v2.0.a1 Prupe.6G207300_v2.0.a1 Prupe.6G207400_v2.0.a1 Prupe.6G207500_v2.0.a1 Prupe.6G207600_v2.0.a1 Prupe.6G207700_v2.0.a1 Prupe.6G207900_v2.0.a1
pyrus_communis pycom01g06970 pycom01g06980 pycom01g06990 pycom05g02460 pycom08g00750 pycom10g13410 pycom15g27310 pycom15g27320
rosa_chinensis RchiOBHm_Chr1g0314861 RchiOBHm_Chr1g0345441 RchiOBHm_Chr1g0345451 RchiOBHm_Chr1g0345621 RchiOBHm_Chr1g0345751 RchiOBHm_Chr1g0345861 RchiOBHm_Chr1g0345871 RchiOBHm_Chr1g0345891 RchiOBHm_Chr2g0094851 RchiOBHm_Chr2g0110471 RchiOBHm_Chr2g0110511 RchiOBHm_Chr2g0110531 RchiOBHm_Chr2g0110541 RchiOBHm_Chr2g0110571 RchiOBHm_Chr5g0039381 RchiOBHm_Chr5g0039391 RchiOBHm_Chr6g0270311 RchiOBHm_Chr6g0270331 RchiOBHm_Chr6g0270411 RchiOBHm_Chr6g0270431
rosa_laevigata RLG00000000515 RLG00000013793 RLG00000013797 RLG00000013799 RLG00000016525 RLG00000017808 RLG00000017811 RLG00000017813 RLG00000017816 RLG00000017819 RLG00000017822 RLG00000017824 RLG00000017825 RLG00000028835
rosa_multiflora Rmu_co8225458.1_g000001 Rmu_sc0000389.1_g000006 Rmu_sc0000389.1_g000014 Rmu_sc0000389.1_g000023 Rmu_sc0001292.1_g000012 Rmu_sc0001292.1_g000026 Rmu_sc0002145.1_g000003 Rmu_sc0002329.1_g000033 Rmu_sc0002833.1_g000044 Rmu_sc0004316.1_g000012 Rmu_sc0004439.1_g000003 Rmu_sc0006422.1_g000028 Rmu_sc0009479.1_g000012 Rmu_sc0010489.1_g000009 Rmu_sc0010489.1_g000010 Rmu_sc0017837.1_g000003 Rmu_sc0032320.1_g000001
rosa_roxburghii Rroxscaffold_1G00050770 Rroxscaffold_2G00133110 Rroxscaffold_2G00133140 Rroxscaffold_2G00133200 Rroxscaffold_2G00133270 Rroxscaffold_2G00133290 Rroxscaffold_2G00133300 Rroxscaffold_2G00133350 Rroxscaffold_4G00292490 Rroxscaffold_4G00309020 Rroxscaffold_4G00331740 Rroxscaffold_4G00331800 Rroxscaffold_6G00404470 Rroxscaffold_7G00197950 Rroxscaffold_7G00197990 Rroxscaffold_7G00198020
rosa_rugosa Rorug01G0002500 Rorug02G0047200 Rorug02G0047300 Rorug02G0047300 Rorug02G0047400 Rorug02G0168000 Rorug02G0168000 Rorug02G0168100 Rorug02G0168100 Rorug02G0168400.1 Rorug03G0157600 Rorug03G0157700 Rorug05G0112600 Rorug06G0054600 Rorug06G0054700
rosa_samantha Rh1AG013300 Rh1AG195600 Rh1AG195700 Rh1AG196000 Rh1BG004900 Rh1BG114300 Rh2AG132300 Rh2BG095500 Rh2BG229700 Rh2BG229800 Rh2CG097400 Rh2CG221500 Rh2CG221800 Rh2CG222100 Rh2CG222200 Rh2CG222500 Rh2CG222600 Rh2CG345000 Rh5BG269700 Rh6AG172900 Rh6AG173100 Rh6CG080500 Rh6DG075900 Rh6DG164700 Rh6DG164900 Rh6DG165200 Rh6DG165300
rosa_wichuraiana Rw0G015390 Rw1G000600 Rw1G016130 Rw1G016190 Rw2G007140 Rw2G016970 Rw2G016990 Rw2G017000 Rw3G018910 Rw3G018920 Rw3G018930 Rw5G024830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 234
AciI CCGC 1 cut(s) 192
AclWI GGATC 1 cut(s) 117
AcsI RAATTY 1 cut(s) 250
AfiI CCNNNNNNNGG 2 cut(s) 55, 197
AgsI TTSAA 2 cut(s) 136, 255
AjnI CCWGG 2 cut(s) 48, 218
AluBI AGCT 4 cut(s) 12, 132, 143, 205
AluI AGCT 4 cut(s) 12, 132, 143, 205
Alw21I GWGCWC 1 cut(s) 207
AlwI GGATC 1 cut(s) 117
ApoI RAATTY 1 cut(s) 250
AspS9I GGNCC 1 cut(s) 223
AsuHPI GGTGA 2 cut(s) 40, 212
AvaII GGWCC 1 cut(s) 223
BaeI ACNNNNGTAYC 2 cut(s) 12, 45
BanII GRGCYC 1 cut(s) 207
Bbv12I GWGCWC 1 cut(s) 207
BciT130I CCWGG 2 cut(s) 50, 220
BfuAI ACCTGC 1 cut(s) 234
BlpI GCTNAGC 1 cut(s) 13
Bme1390I CCNGG 2 cut(s) 50, 220
Bme18I GGWCC 1 cut(s) 223
BmgT120I GGNCC 1 cut(s) 223
BmiI GGNNCC 1 cut(s) 224
BmrFI CCNGG 2 cut(s) 50, 220
BpmI CTGGAG 1 cut(s) 244
Bpu1102I GCTNAGC 1 cut(s) 13
BsaJI CCNNGG 1 cut(s) 219
BsaXI ACNNNNNCTCC 2 cut(s) 83, 113
Bsc4I CCNNNNNNNGG 2 cut(s) 55, 197
Bse118I RCCGGY 1 cut(s) 194
BseBI CCWGG 2 cut(s) 50, 220
BseDI CCNNGG 1 cut(s) 219
BseGI GGATG 2 cut(s) 72, 215
BseLI CCNNNNNNNGG 2 cut(s) 55, 197
BseRI GAGGAG 1 cut(s) 91
BsiHKAI GWGCWC 1 cut(s) 207
BsiSI CCGG 1 cut(s) 195
BslFI GGGAC 1 cut(s) 236
BslI CCNNNNNNNGG 2 cut(s) 55, 197
BsmFI GGGAC 1 cut(s) 236
Bsp1286I GDGCHC 1 cut(s) 207
Bsp143I GATC 1 cut(s) 122
Bsp1720I GCTNAGC 1 cut(s) 13
BspACI CCGC 1 cut(s) 192
BspLI GGNNCC 1 cut(s) 224
BspMI ACCTGC 1 cut(s) 234
BspPI GGATC 1 cut(s) 117
BsrFI RCCGGY 1 cut(s) 194
BssAI RCCGGY 1 cut(s) 194
BssECI CCNNGG 1 cut(s) 219
BssMI GATC 1 cut(s) 122
Bst2UI CCWGG 2 cut(s) 50, 220
BstC8I GCNNGC 3 cut(s) 145, 167, 171
BstDEI CTNAG 1 cut(s) 13
BstENI CCTNNNNNAGG 1 cut(s) 53
BstF5I GGATG 2 cut(s) 72, 215
BstKTI GATC 1 cut(s) 125
BstMBI GATC 1 cut(s) 122
BstMWI GCNNNNNNNGC 1 cut(s) 179
BstNI CCWGG 2 cut(s) 50, 220
BstNSI RCATGY 1 cut(s) 169
BstSCI CCNGG 2 cut(s) 48, 218
BstX2I RGATCY 1 cut(s) 122
BstYI RGATCY 1 cut(s) 122
BtsCI GGATG 2 cut(s) 72, 215
BveI ACCTGC 1 cut(s) 234
Cac8I GCNNGC 3 cut(s) 145, 167, 171
Cfr10I RCCGGY 1 cut(s) 194
Cfr13I GGNCC 1 cut(s) 223
CviAII CATG 2 cut(s) 115, 166
CviJI RGCY 6 cut(s) 12, 38, 132, 143, 205, 264
CviKI_1 RGCY 6 cut(s) 12, 38, 132, 143, 205, 264
DdeI CTNAG 1 cut(s) 13
DpnI GATC 1 cut(s) 124
DpnII GATC 1 cut(s) 122
Ecl136II GAGCTC 1 cut(s) 205
Eco24I GRGCYC 1 cut(s) 207
Eco47I GGWCC 1 cut(s) 223
Eco53kI GAGCTC 1 cut(s) 205
EcoICRI GAGCTC 1 cut(s) 205
EcoNI CCTNNNNNAGG 1 cut(s) 53
EcoO109I RGGNCCY 1 cut(s) 223
EcoRII CCWGG 2 cut(s) 48, 218
EcoT38I GRGCYC 1 cut(s) 207
FaeI CATG 2 cut(s) 118, 169
FaiI YATR 3 cut(s) 116, 129, 167
FaqI GGGAC 1 cut(s) 236
FatI CATG 2 cut(s) 114, 165
FauI CCCGC 1 cut(s) 199
FokI GGATG 2 cut(s) 59, 202
FriOI GRGCYC 1 cut(s) 207
GsuI CTGGAG 1 cut(s) 244
HapII CCGG 1 cut(s) 195
Hin1II CATG 2 cut(s) 118, 169
HpaII CCGG 1 cut(s) 195
HphI GGTGA 2 cut(s) 40, 212
Hpy99I CGWCG 1 cut(s) 165
HpyAV CCTTC 2 cut(s) 25, 222
HpyCH4IV ACGT 1 cut(s) 23
HpyF10VI GCNNNNNNNGC 1 cut(s) 179
HpyF3I CTNAG 1 cut(s) 13
HpySE526I ACGT 1 cut(s) 23
Hsp92II CATG 2 cut(s) 118, 169
Kzo9I GATC 1 cut(s) 122
MaeII ACGT 1 cut(s) 23
MalI GATC 1 cut(s) 124
MboI GATC 1 cut(s) 122
MboII GAAGA 1 cut(s) 88
MflI RGATCY 1 cut(s) 122
MhlI GDGCHC 1 cut(s) 207
MluCI AATT 3 cut(s) 5, 250, 274
MmeI TCCRAC 1 cut(s) 135
MnlI CCTC 1 cut(s) 112
MseI TTAA 1 cut(s) 277
MspI CCGG 1 cut(s) 195
MspR9I CCNGG 2 cut(s) 50, 220
MvaI CCWGG 2 cut(s) 50, 220
MwoI GCNNNNNNNGC 1 cut(s) 179
NdeII GATC 1 cut(s) 122
NlaIII CATG 2 cut(s) 118, 169
NlaIV GGNNCC 1 cut(s) 224
NspI RCATGY 1 cut(s) 169
PaeI GCATGC 1 cut(s) 169
PpuMI RGGWCCY 1 cut(s) 223
Psp124BI GAGCTC 1 cut(s) 207
Psp5II RGGWCCY 1 cut(s) 223
Psp6I CCWGG 2 cut(s) 48, 218
PspGI CCWGG 2 cut(s) 48, 218
PspN4I GGNNCC 1 cut(s) 224
PspPI GGNCC 1 cut(s) 223
PspPPI RGGWCCY 1 cut(s) 223
PsuI RGATCY 1 cut(s) 122
SacI GAGCTC 1 cut(s) 207
SaqAI TTAA 1 cut(s) 277
Sau3AI GATC 1 cut(s) 122
Sau96I GGNCC 1 cut(s) 223
ScrFI CCNGG 2 cut(s) 50, 220
SduI GDGCHC 1 cut(s) 207
SetI ASST 7 cut(s) 14, 26, 36, 134, 145, 207, 228
SgrAI CRCCGGYG 1 cut(s) 194
SinI GGWCC 1 cut(s) 223
SphI GCATGC 1 cut(s) 169
Sse9I AATT 3 cut(s) 5, 250, 274
SsiI CCGC 1 cut(s) 192
SstI GAGCTC 1 cut(s) 207
StyD4I CCNGG 2 cut(s) 48, 218
TaiI ACGT 1 cut(s) 26
TasI AATT 3 cut(s) 5, 250, 274
Tru1I TTAA 1 cut(s) 277
Tru9I TTAA 1 cut(s) 277
TspDTI ATGAA 1 cut(s) 204
VpaK11BI GGWCC 1 cut(s) 223
XagI CCTNNNNNAGG 1 cut(s) 53
XapI RAATTY 1 cut(s) 250
XceI RCATGY 1 cut(s) 169
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.