MD10G1035900.v1.1

Cinnamyl alcohol dehydrogenase-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
OG0000167
Physical Location & Seq
Forward (+)
4719066 .. 4719881
816 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1035900.v1.1.491

Sequence Viewer

Length: 216 bp
ATGGGGGAATCTCCAGAACAACACCCCAAGAAAGCATTTGGATGGGCTGCCAGAGATTCATCTGGTGTTCTCTCTCCCTTCAAATTCTCCAGAAGGGATACAGGAAAGAACGACCTCACGTTCAAAGTATTATACTGTGGGATATGCCATACAGATCTTCACATGATTAAGAATGAATGGGGAAATTCCATCTACACTAAATTTTGTTATGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
ADH_N ADH_zinc_N

Protein Analysis

72

Amino Acids

8.18

Weight (kDa)

8.51

Isoelectric Point (pI)

33.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000167)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G37980 AT4G37980 AT4G37990
fragaria_vesca FvH4_1g19210 FvH4_1g19220 FvH4_1g19240 FvH4_1g19240 FvH4_1g19261 FvH4_1g19262 FvH4_1g19263 FvH4_1g19263 FvH4_1g19265 FvH4_1g19281 FvH4_1g19281 FvH4_7g07240 FvH4_7g07240 FvH4_7g07240
malus_domestica MD01G1042500.v1.1 MD01G1042600.v1.1 MD01G1042800.v1.1 MD01G1042900.v1.1 MD05G1034100.v1.1 MD10G1035900.v1.1 MD10G1036000.v1.1 MD10G1155000.v1.1 MD10G1155100.v1.1 MD10G1155200.v1.1 MD10G1155400.v1.1 MD10G1155700.v1.1 MD10G1155800.v1.1 MD15G1308800.v1.1 MD15G1308900.v1.1
prunus_persica Prupe.6G205600_v2.0.a1 Prupe.6G205700_v2.0.a1 Prupe.6G205800_v2.0.a1 Prupe.6G205900_v2.0.a1 Prupe.6G206300_v2.0.a1 Prupe.6G206800_v2.0.a1 Prupe.6G207100_v2.0.a1 Prupe.6G207200_v2.0.a1 Prupe.6G207300_v2.0.a1 Prupe.6G207400_v2.0.a1 Prupe.6G207500_v2.0.a1 Prupe.6G207600_v2.0.a1 Prupe.6G207700_v2.0.a1 Prupe.6G207900_v2.0.a1
pyrus_communis pycom01g06970 pycom01g06980 pycom01g06990 pycom05g02460 pycom08g00750 pycom10g13410 pycom15g27310 pycom15g27320
rosa_chinensis RchiOBHm_Chr1g0314861 RchiOBHm_Chr1g0345441 RchiOBHm_Chr1g0345451 RchiOBHm_Chr1g0345621 RchiOBHm_Chr1g0345751 RchiOBHm_Chr1g0345861 RchiOBHm_Chr1g0345871 RchiOBHm_Chr1g0345891 RchiOBHm_Chr2g0094851 RchiOBHm_Chr2g0110471 RchiOBHm_Chr2g0110511 RchiOBHm_Chr2g0110531 RchiOBHm_Chr2g0110541 RchiOBHm_Chr2g0110571 RchiOBHm_Chr5g0039381 RchiOBHm_Chr5g0039391 RchiOBHm_Chr6g0270311 RchiOBHm_Chr6g0270331 RchiOBHm_Chr6g0270411 RchiOBHm_Chr6g0270431
rosa_laevigata RLG00000000515 RLG00000013793 RLG00000013797 RLG00000013799 RLG00000016525 RLG00000017808 RLG00000017811 RLG00000017813 RLG00000017816 RLG00000017819 RLG00000017822 RLG00000017824 RLG00000017825 RLG00000028835
rosa_multiflora Rmu_co8225458.1_g000001 Rmu_sc0000389.1_g000006 Rmu_sc0000389.1_g000014 Rmu_sc0000389.1_g000023 Rmu_sc0001292.1_g000012 Rmu_sc0001292.1_g000026 Rmu_sc0002145.1_g000003 Rmu_sc0002329.1_g000033 Rmu_sc0002833.1_g000044 Rmu_sc0004316.1_g000012 Rmu_sc0004439.1_g000003 Rmu_sc0006422.1_g000028 Rmu_sc0009479.1_g000012 Rmu_sc0010489.1_g000009 Rmu_sc0010489.1_g000010 Rmu_sc0017837.1_g000003 Rmu_sc0032320.1_g000001
rosa_roxburghii Rroxscaffold_1G00050770 Rroxscaffold_2G00133110 Rroxscaffold_2G00133140 Rroxscaffold_2G00133200 Rroxscaffold_2G00133270 Rroxscaffold_2G00133290 Rroxscaffold_2G00133300 Rroxscaffold_2G00133350 Rroxscaffold_4G00292490 Rroxscaffold_4G00309020 Rroxscaffold_4G00331740 Rroxscaffold_4G00331800 Rroxscaffold_6G00404470 Rroxscaffold_7G00197950 Rroxscaffold_7G00197990 Rroxscaffold_7G00198020
rosa_rugosa Rorug01G0002500 Rorug02G0047200 Rorug02G0047300 Rorug02G0047300 Rorug02G0047400 Rorug02G0168000 Rorug02G0168000 Rorug02G0168100 Rorug02G0168100 Rorug02G0168400.1 Rorug03G0157600 Rorug03G0157700 Rorug05G0112600 Rorug06G0054600 Rorug06G0054700
rosa_samantha Rh1AG013300 Rh1AG195600 Rh1AG195700 Rh1AG196000 Rh1BG004900 Rh1BG114300 Rh2AG132300 Rh2BG095500 Rh2BG229700 Rh2BG229800 Rh2CG097400 Rh2CG221500 Rh2CG221800 Rh2CG222100 Rh2CG222200 Rh2CG222500 Rh2CG222600 Rh2CG345000 Rh5BG269700 Rh6AG172900 Rh6AG173100 Rh6CG080500 Rh6DG075900 Rh6DG164700 Rh6DG164900 Rh6DG165200 Rh6DG165300
rosa_wichuraiana Rw0G015390 Rw1G000600 Rw1G016130 Rw1G016190 Rw2G007140 Rw2G016970 Rw2G016990 Rw2G017000 Rw3G018910 Rw3G018920 Rw3G018930 Rw5G024830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 3 cut(s) 83, 184, 200
AgsI TTSAA 2 cut(s) 82, 124
ApeKI GCWGC 1 cut(s) 47
ApoI RAATTY 3 cut(s) 83, 184, 200
BbvI GCAGC 1 cut(s) 34
BccI CCATC 2 cut(s) 36, 197
BciVI GTATCC 1 cut(s) 91
BfuI GTATCC 1 cut(s) 91
BglII AGATCT 1 cut(s) 154
BisI GCNGC 1 cut(s) 48
BlsI GCNGC 1 cut(s) 49
BpmI CTGGAG 1 cut(s) 73
BseGI GGATG 1 cut(s) 47
BseXI GCAGC 1 cut(s) 34
Bsp143I GATC 1 cut(s) 154
BssMI GATC 1 cut(s) 154
Bst4CI ACNGT 1 cut(s) 137
BstF5I GGATG 1 cut(s) 47
BstKTI GATC 1 cut(s) 157
BstMBI GATC 1 cut(s) 154
BstV1I GCAGC 1 cut(s) 34
BstX2I RGATCY 1 cut(s) 154
BstYI RGATCY 1 cut(s) 154
BsuI GTATCC 1 cut(s) 91
BtsCI GGATG 1 cut(s) 47
CviAII CATG 1 cut(s) 163
CviJI RGCY 1 cut(s) 47
CviKI_1 RGCY 1 cut(s) 47
DpnI GATC 1 cut(s) 156
DpnII GATC 1 cut(s) 154
FaeI CATG 1 cut(s) 166
FaiI YATR 5 cut(s) 133, 145, 150, 164, 210
FatI CATG 1 cut(s) 162
Fnu4HI GCNGC 1 cut(s) 48
FokI GGATG 1 cut(s) 54
Fsp4HI GCNGC 1 cut(s) 48
GluI GCNGC 1 cut(s) 48
GsuI CTGGAG 1 cut(s) 73
Hin1II CATG 1 cut(s) 166
HinfI GANTC 2 cut(s) 8, 56
Hpy188III TCNNGA 2 cut(s) 14, 90
HpyAV CCTTC 2 cut(s) 87, 88
HpyCH4III ACNGT 1 cut(s) 137
HpyCH4IV ACGT 1 cut(s) 119
HpySE526I ACGT 1 cut(s) 119
Hsp92II CATG 1 cut(s) 166
Kzo9I GATC 1 cut(s) 154
LpnPI CCDG 5 cut(s) 27, 48, 64, 87, 103
Lsp1109I GCAGC 1 cut(s) 34
MaeII ACGT 1 cut(s) 119
MalI GATC 1 cut(s) 156
MboI GATC 1 cut(s) 154
MboII GAAGA 1 cut(s) 149
MflI RGATCY 1 cut(s) 154
MluCI AATT 3 cut(s) 83, 184, 200
MnlI CCTC 1 cut(s) 125
MseI TTAA 1 cut(s) 168
MslI CAYNNNNRTG 1 cut(s) 40
NdeII GATC 1 cut(s) 154
NlaIII CATG 1 cut(s) 166
PfeI GAWTC 2 cut(s) 8, 56
PkrI GCNGC 1 cut(s) 49
PsuI RGATCY 1 cut(s) 154
RseI CAYNNNNRTG 1 cut(s) 40
SaqAI TTAA 1 cut(s) 168
SatI GCNGC 1 cut(s) 48
Sau3AI GATC 1 cut(s) 154
SetI ASST 2 cut(s) 117, 122
SgeI CNNG 8 cut(s) 26, 40, 63, 75, 102, 114, 130, 175
SmiMI CAYNNNNRTG 1 cut(s) 40
Sse9I AATT 3 cut(s) 83, 184, 200
TaaI ACNGT 1 cut(s) 137
TaiI ACGT 1 cut(s) 122
TasI AATT 3 cut(s) 83, 184, 200
TfiI GAWTC 2 cut(s) 8, 56
Tru1I TTAA 1 cut(s) 168
Tru9I TTAA 1 cut(s) 168
TseI GCWGC 1 cut(s) 47
TspDTI ATGAA 2 cut(s) 48, 189
XapI RAATTY 3 cut(s) 83, 184, 200
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.