Rmu_sc0032320.1_g000001

Dehydrogenase

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0032320.1
Physical Location & Seq
Forward (+)
771 .. 1336
566 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0032320.1_g000001.1.cds

Sequence Viewer

Length: 337 bp
atggtgatgtctcacgagcaagaacaccccaagaaggcatttggatgggctgcaagagattcatctggtgttctctctcccttccgtttctccagaagggaaaccggagagaaagatgtgacattcaaagtgttgtactgtgggatttgccattcggaccttcacaatgtcaagaatgaacacggcttctctacctatcctctggttcccggccatgagattgttggtgaagtaacggaaatagggagcaatgtacaaaaattcaaagttggagacaaagtcggtgttggatgcttagtgggagcttgccaatcttgtgatagttgtaccgaccacc
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

112

Amino Acids

12.28

Weight (kDa)

6.36

Isoelectric Point (pI)

49.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000167)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G37980 AT4G37980 AT4G37990
fragaria_vesca FvH4_1g19210 FvH4_1g19220 FvH4_1g19240 FvH4_1g19240 FvH4_1g19261 FvH4_1g19262 FvH4_1g19263 FvH4_1g19263 FvH4_1g19265 FvH4_1g19281 FvH4_1g19281 FvH4_7g07240 FvH4_7g07240 FvH4_7g07240
malus_domestica MD01G1042500.v1.1 MD01G1042600.v1.1 MD01G1042800.v1.1 MD01G1042900.v1.1 MD05G1034100.v1.1 MD10G1035900.v1.1 MD10G1036000.v1.1 MD10G1155000.v1.1 MD10G1155100.v1.1 MD10G1155200.v1.1 MD10G1155400.v1.1 MD10G1155700.v1.1 MD10G1155800.v1.1 MD15G1308800.v1.1 MD15G1308900.v1.1
prunus_persica Prupe.6G205600_v2.0.a1 Prupe.6G205700_v2.0.a1 Prupe.6G205800_v2.0.a1 Prupe.6G205900_v2.0.a1 Prupe.6G206300_v2.0.a1 Prupe.6G206800_v2.0.a1 Prupe.6G207100_v2.0.a1 Prupe.6G207200_v2.0.a1 Prupe.6G207300_v2.0.a1 Prupe.6G207400_v2.0.a1 Prupe.6G207500_v2.0.a1 Prupe.6G207600_v2.0.a1 Prupe.6G207700_v2.0.a1 Prupe.6G207900_v2.0.a1
pyrus_communis pycom01g06970 pycom01g06980 pycom01g06990 pycom05g02460 pycom08g00750 pycom10g13410 pycom15g27310 pycom15g27320
rosa_chinensis RchiOBHm_Chr1g0314861 RchiOBHm_Chr1g0345441 RchiOBHm_Chr1g0345451 RchiOBHm_Chr1g0345621 RchiOBHm_Chr1g0345751 RchiOBHm_Chr1g0345861 RchiOBHm_Chr1g0345871 RchiOBHm_Chr1g0345891 RchiOBHm_Chr2g0094851 RchiOBHm_Chr2g0110471 RchiOBHm_Chr2g0110511 RchiOBHm_Chr2g0110531 RchiOBHm_Chr2g0110541 RchiOBHm_Chr2g0110571 RchiOBHm_Chr5g0039381 RchiOBHm_Chr5g0039391 RchiOBHm_Chr6g0270311 RchiOBHm_Chr6g0270331 RchiOBHm_Chr6g0270411 RchiOBHm_Chr6g0270431
rosa_laevigata RLG00000000515 RLG00000013793 RLG00000013797 RLG00000013799 RLG00000016525 RLG00000017808 RLG00000017811 RLG00000017813 RLG00000017816 RLG00000017819 RLG00000017822 RLG00000017824 RLG00000017825 RLG00000028835
rosa_multiflora Rmu_co8225458.1_g000001 Rmu_sc0000389.1_g000006 Rmu_sc0000389.1_g000014 Rmu_sc0000389.1_g000023 Rmu_sc0001292.1_g000012 Rmu_sc0001292.1_g000026 Rmu_sc0002145.1_g000003 Rmu_sc0002329.1_g000033 Rmu_sc0002833.1_g000044 Rmu_sc0004316.1_g000012 Rmu_sc0004439.1_g000003 Rmu_sc0006422.1_g000028 Rmu_sc0009479.1_g000012 Rmu_sc0010489.1_g000009 Rmu_sc0010489.1_g000010 Rmu_sc0017837.1_g000003 Rmu_sc0032320.1_g000001
rosa_roxburghii Rroxscaffold_1G00050770 Rroxscaffold_2G00133110 Rroxscaffold_2G00133140 Rroxscaffold_2G00133200 Rroxscaffold_2G00133270 Rroxscaffold_2G00133290 Rroxscaffold_2G00133300 Rroxscaffold_2G00133350 Rroxscaffold_4G00292490 Rroxscaffold_4G00309020 Rroxscaffold_4G00331740 Rroxscaffold_4G00331800 Rroxscaffold_6G00404470 Rroxscaffold_7G00197950 Rroxscaffold_7G00197990 Rroxscaffold_7G00198020
rosa_rugosa Rorug01G0002500 Rorug02G0047200 Rorug02G0047300 Rorug02G0047300 Rorug02G0047400 Rorug02G0168000 Rorug02G0168000 Rorug02G0168100 Rorug02G0168100 Rorug02G0168400.1 Rorug03G0157600 Rorug03G0157700 Rorug05G0112600 Rorug06G0054600 Rorug06G0054700
rosa_samantha Rh1AG013300 Rh1AG195600 Rh1AG195700 Rh1AG196000 Rh1BG004900 Rh1BG114300 Rh2AG132300 Rh2BG095500 Rh2BG229700 Rh2BG229800 Rh2CG097400 Rh2CG221500 Rh2CG221800 Rh2CG222100 Rh2CG222200 Rh2CG222500 Rh2CG222600 Rh2CG345000 Rh5BG269700 Rh6AG172900 Rh6AG173100 Rh6CG080500 Rh6DG075900 Rh6DG164700 Rh6DG164900 Rh6DG165200 Rh6DG165300
rosa_wichuraiana Rw0G015390 Rw1G000600 Rw1G016130 Rw1G016190 Rw2G007140 Rw2G016970 Rw2G016990 Rw2G017000 Rw3G018910 Rw3G018920 Rw3G018930 Rw5G024830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 211
AcsI RAATTY 1 cut(s) 260
AfaI GTAC 3 cut(s) 137, 255, 328
AfiI CCNNNNNNNGG 1 cut(s) 34
AgsI TTSAA 2 cut(s) 127, 265
AluBI AGCT 1 cut(s) 305
AluI AGCT 1 cut(s) 305
Alw26I GTCTC 2 cut(s) 15, 267
AoxI GGCC 1 cut(s) 211
ApeKI GCWGC 1 cut(s) 50
ApoI RAATTY 1 cut(s) 260
AspS9I GGNCC 1 cut(s) 157
AsuC2I CCSGG 1 cut(s) 210
AsuHPI GGTGA 2 cut(s) 16, 239
AvaII GGWCC 1 cut(s) 157
BauI CACGAG 1 cut(s) 14
BbvI GCAGC 1 cut(s) 37
BccI CCATC 1 cut(s) 39
BceAI ACGGC 1 cut(s) 199
BcnI CCSGG 1 cut(s) 210
BcoDI GTCTC 2 cut(s) 15, 267
BisI GCNGC 1 cut(s) 51
BlsI GCNGC 1 cut(s) 52
Bme1390I CCNGG 1 cut(s) 210
Bme18I GGWCC 1 cut(s) 157
BmgT120I GGNCC 1 cut(s) 157
BmiI GGNNCC 1 cut(s) 207
BmrFI CCNGG 1 cut(s) 210
BmsI GCATC 1 cut(s) 281
BpmI CTGGAG 1 cut(s) 76
BpuMI CCSGG 1 cut(s) 210
BsaWI WCCGGW 1 cut(s) 104
BsaXI ACNNNNNCTCC 2 cut(s) 264, 294
Bsc4I CCNNNNNNNGG 1 cut(s) 34
Bse3DI GCAATG 1 cut(s) 256
BseGI GGATG 2 cut(s) 50, 296
BseLI CCNNNNNNNGG 1 cut(s) 34
BseMI GCAATG 1 cut(s) 256
BseXI GCAGC 1 cut(s) 37
BshFI GGCC 1 cut(s) 213
BsiSI CCGG 2 cut(s) 105, 210
BslI CCNNNNNNNGG 1 cut(s) 34
BsmAI GTCTC 2 cut(s) 15, 267
BsnI GGCC 1 cut(s) 213
Bsp1407I TGTACA 1 cut(s) 253
BspANI GGCC 1 cut(s) 213
BspLI GGNNCC 1 cut(s) 207
BsrDI GCAATG 1 cut(s) 256
BsrGI TGTACA 1 cut(s) 253
BssSI CACGAG 1 cut(s) 14
Bst2BI CACGAG 1 cut(s) 14
Bst4CI ACNGT 1 cut(s) 140
BstAUI TGTACA 1 cut(s) 253
BstC8I GCNNGC 1 cut(s) 307
BstDEI CTNAG 1 cut(s) 295
BstF5I GGATG 2 cut(s) 50, 296
BstMAI GTCTC 2 cut(s) 15, 267
BstSCI CCNGG 1 cut(s) 208
BstV1I GCAGC 1 cut(s) 37
BsuRI GGCC 1 cut(s) 213
BtsCI GGATG 2 cut(s) 50, 296
Cac8I GCNNGC 1 cut(s) 307
Cfr13I GGNCC 1 cut(s) 157
Csp6I GTAC 3 cut(s) 136, 254, 327
CviAII CATG 1 cut(s) 215
CviJI RGCY 4 cut(s) 50, 186, 213, 305
CviKI_1 RGCY 4 cut(s) 50, 186, 213, 305
CviQI GTAC 3 cut(s) 136, 254, 327
DdeI CTNAG 1 cut(s) 295
EaeI YGGCCR 1 cut(s) 211
Eco47I GGWCC 1 cut(s) 157
FaeI CATG 1 cut(s) 218
FaiI YATR 1 cut(s) 216
FatI CATG 1 cut(s) 214
Fnu4HI GCNGC 1 cut(s) 51
FokI GGATG 2 cut(s) 57, 303
Fsp4HI GCNGC 1 cut(s) 51
GluI GCNGC 1 cut(s) 51
GsuI CTGGAG 1 cut(s) 76
HaeIII GGCC 1 cut(s) 213
HapII CCGG 2 cut(s) 105, 210
Hin1II CATG 1 cut(s) 218
HinfI GANTC 1 cut(s) 59
HpaII CCGG 2 cut(s) 105, 210
HphI GGTGA 2 cut(s) 16, 239
Hpy188I TCNGA 1 cut(s) 157
Hpy188III TCNNGA 3 cut(s) 14, 93, 172
HpyAV CCTTC 4 cut(s) 28, 90, 91, 170
HpyCH4III ACNGT 1 cut(s) 140
HpyCH4V TGCA 1 cut(s) 53
HpyF3I CTNAG 1 cut(s) 295
Hsp92II CATG 1 cut(s) 218
LmnI GCTCC 2 cut(s) 246, 302
LpnPI CCDG 5 cut(s) 51, 106, 118, 188, 223
Lsp1109I GCAGC 1 cut(s) 37
LweI GCATC 1 cut(s) 281
MaeIII GTNAC 2 cut(s) 118, 232
MluCI AATT 1 cut(s) 260
MmeI TCCRAC 2 cut(s) 250, 268
MnlI CCTC 1 cut(s) 210
MslI CAYNNNNRTG 1 cut(s) 43
MspI CCGG 2 cut(s) 105, 210
MspR9I CCNGG 1 cut(s) 210
NciI CCSGG 1 cut(s) 210
NlaIII CATG 1 cut(s) 218
NlaIV GGNNCC 1 cut(s) 207
NmuCI GTSAC 1 cut(s) 118
PfeI GAWTC 1 cut(s) 59
PflFI GACNNNGTC 1 cut(s) 278
PkrI GCNGC 1 cut(s) 52
PspN4I GGNNCC 1 cut(s) 207
PspPI GGNCC 1 cut(s) 157
PsyI GACNNNGTC 1 cut(s) 278
RsaI GTAC 3 cut(s) 137, 255, 328
RsaNI GTAC 3 cut(s) 136, 254, 327
RseI CAYNNNNRTG 1 cut(s) 43
SatI GCNGC 1 cut(s) 51
Sau96I GGNCC 1 cut(s) 157
ScrFI CCNGG 1 cut(s) 210
SetI ASST 3 cut(s) 162, 197, 307
SfaNI GCATC 1 cut(s) 281
SinI GGWCC 1 cut(s) 157
SmiMI CAYNNNNRTG 1 cut(s) 43
Sse9I AATT 1 cut(s) 260
StyD4I CCNGG 1 cut(s) 208
TaaI ACNGT 1 cut(s) 140
TasI AATT 1 cut(s) 260
TatI WGTACW 2 cut(s) 135, 253
TfiI GAWTC 1 cut(s) 59
TseFI GTSAC 1 cut(s) 118
TseI GCWGC 1 cut(s) 50
Tsp45I GTSAC 1 cut(s) 118
TspDTI ATGAA 2 cut(s) 51, 192
TspGWI ACGGA 2 cut(s) 74, 251
Tth111I GACNNNGTC 1 cut(s) 278
VpaK11BI GGWCC 1 cut(s) 157
XapI RAATTY 1 cut(s) 260
XcmI CCANNNNNNNNNTGG 1 cut(s) 221
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.