RLG00000000515

No description available

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
Physical Location & Seq
Forward (+)
1389363 .. 1390065
703 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000000515

Sequence Viewer

Length: 495 bp
ATGGTCTCTCTCAAGGTGGAACTTTCTCTTGCGAGGGACGTATTTTTAGATAGCATCAGTGGGATTGATGTAGAAGACCAATTGGTCTTGGAAGATGTTGAGGACAATCACGATGAAGCCGGTGATGTAGCTGAAGGTGAAGTCGTAGGTCCAAAGGTGGTGGGAAGAGGTGAAGAGGAAAGGGAGAGTGAAGATCAGAGAGTGGAGGAAGCAATTAAAAAGATGGAATCAAAGTTAAGATCTGAAATTGATAGTAAACGAACTGAAGACAGTAAAGAAACTAAAGATGGCAAACAAACTGAAGACGGTAAAGAAATTGAAGATGGTAAACAAGTTGAAGATGGAAAGCGAACTGAAGGTAGCGAACGAATTGAAGATGGTAAACAAGCTGAAGATGGCAAACAATTTGAAGCTAGCAAACGAATTGACGATGGCGAACAAAATGGAGATGGTAAACAAACTGAAGATGCTAGACAAAGTGAAGACATGTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

165

Amino Acids

18.34

Weight (kDa)

4.32

Isoelectric Point (pI)

66.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000167)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G37980 AT4G37980 AT4G37990
fragaria_vesca FvH4_1g19210 FvH4_1g19220 FvH4_1g19240 FvH4_1g19240 FvH4_1g19261 FvH4_1g19262 FvH4_1g19263 FvH4_1g19263 FvH4_1g19265 FvH4_1g19281 FvH4_1g19281 FvH4_7g07240 FvH4_7g07240 FvH4_7g07240
malus_domestica MD01G1042500.v1.1 MD01G1042600.v1.1 MD01G1042800.v1.1 MD01G1042900.v1.1 MD05G1034100.v1.1 MD10G1035900.v1.1 MD10G1036000.v1.1 MD10G1155000.v1.1 MD10G1155100.v1.1 MD10G1155200.v1.1 MD10G1155400.v1.1 MD10G1155700.v1.1 MD10G1155800.v1.1 MD15G1308800.v1.1 MD15G1308900.v1.1
prunus_persica Prupe.6G205600_v2.0.a1 Prupe.6G205700_v2.0.a1 Prupe.6G205800_v2.0.a1 Prupe.6G205900_v2.0.a1 Prupe.6G206300_v2.0.a1 Prupe.6G206800_v2.0.a1 Prupe.6G207100_v2.0.a1 Prupe.6G207200_v2.0.a1 Prupe.6G207300_v2.0.a1 Prupe.6G207400_v2.0.a1 Prupe.6G207500_v2.0.a1 Prupe.6G207600_v2.0.a1 Prupe.6G207700_v2.0.a1 Prupe.6G207900_v2.0.a1
pyrus_communis pycom01g06970 pycom01g06980 pycom01g06990 pycom05g02460 pycom08g00750 pycom10g13410 pycom15g27310 pycom15g27320
rosa_chinensis RchiOBHm_Chr1g0314861 RchiOBHm_Chr1g0345441 RchiOBHm_Chr1g0345451 RchiOBHm_Chr1g0345621 RchiOBHm_Chr1g0345751 RchiOBHm_Chr1g0345861 RchiOBHm_Chr1g0345871 RchiOBHm_Chr1g0345891 RchiOBHm_Chr2g0094851 RchiOBHm_Chr2g0110471 RchiOBHm_Chr2g0110511 RchiOBHm_Chr2g0110531 RchiOBHm_Chr2g0110541 RchiOBHm_Chr2g0110571 RchiOBHm_Chr5g0039381 RchiOBHm_Chr5g0039391 RchiOBHm_Chr6g0270311 RchiOBHm_Chr6g0270331 RchiOBHm_Chr6g0270411 RchiOBHm_Chr6g0270431
rosa_laevigata RLG00000000515 RLG00000013793 RLG00000013797 RLG00000013799 RLG00000016525 RLG00000017808 RLG00000017811 RLG00000017813 RLG00000017816 RLG00000017819 RLG00000017822 RLG00000017824 RLG00000017825 RLG00000028835
rosa_multiflora Rmu_co8225458.1_g000001 Rmu_sc0000389.1_g000006 Rmu_sc0000389.1_g000014 Rmu_sc0000389.1_g000023 Rmu_sc0001292.1_g000012 Rmu_sc0001292.1_g000026 Rmu_sc0002145.1_g000003 Rmu_sc0002329.1_g000033 Rmu_sc0002833.1_g000044 Rmu_sc0004316.1_g000012 Rmu_sc0004439.1_g000003 Rmu_sc0006422.1_g000028 Rmu_sc0009479.1_g000012 Rmu_sc0010489.1_g000009 Rmu_sc0010489.1_g000010 Rmu_sc0017837.1_g000003 Rmu_sc0032320.1_g000001
rosa_roxburghii Rroxscaffold_1G00050770 Rroxscaffold_2G00133110 Rroxscaffold_2G00133140 Rroxscaffold_2G00133200 Rroxscaffold_2G00133270 Rroxscaffold_2G00133290 Rroxscaffold_2G00133300 Rroxscaffold_2G00133350 Rroxscaffold_4G00292490 Rroxscaffold_4G00309020 Rroxscaffold_4G00331740 Rroxscaffold_4G00331800 Rroxscaffold_6G00404470 Rroxscaffold_7G00197950 Rroxscaffold_7G00197990 Rroxscaffold_7G00198020
rosa_rugosa Rorug01G0002500 Rorug02G0047200 Rorug02G0047300 Rorug02G0047300 Rorug02G0047400 Rorug02G0168000 Rorug02G0168000 Rorug02G0168100 Rorug02G0168100 Rorug02G0168400.1 Rorug03G0157600 Rorug03G0157700 Rorug05G0112600 Rorug06G0054600 Rorug06G0054700
rosa_samantha Rh1AG013300 Rh1AG195600 Rh1AG195700 Rh1AG196000 Rh1BG004900 Rh1BG114300 Rh2AG132300 Rh2BG095500 Rh2BG229700 Rh2BG229800 Rh2CG097400 Rh2CG221500 Rh2CG221800 Rh2CG222100 Rh2CG222200 Rh2CG222500 Rh2CG222600 Rh2CG345000 Rh5BG269700 Rh6AG172900 Rh6AG173100 Rh6CG080500 Rh6DG075900 Rh6DG164700 Rh6DG164900 Rh6DG165200 Rh6DG165300
rosa_wichuraiana Rw0G015390 Rw1G000600 Rw1G016130 Rw1G016190 Rw2G007140 Rw2G016970 Rw2G016990 Rw2G017000 Rw3G018910 Rw3G018920 Rw3G018930 Rw5G024830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 83
AcuI CTGAAG 6 cut(s) 153, 285, 321, 375, 411, 483
AflIII ACRYGT 1 cut(s) 486
AgsI TTSAA 4 cut(s) 320, 338, 374, 410
AluBI AGCT 3 cut(s) 131, 389, 413
AluI AGCT 3 cut(s) 131, 389, 413
Alw26I GTCTC 1 cut(s) 10
AspS9I GGNCC 1 cut(s) 149
AsuHPI GGTGA 3 cut(s) 134, 149, 182
AsuNHI GCTAGC 1 cut(s) 413
AvaII GGWCC 1 cut(s) 149
BbsI GAAGAC 4 cut(s) 81, 273, 309, 489
BccI CCATC 8 cut(s) 217, 281, 317, 335, 371, 389, 425, 443
BcoDI GTCTC 1 cut(s) 10
BfaI CTAG 2 cut(s) 414, 471
BglII AGATCT 1 cut(s) 239
Bme18I GGWCC 1 cut(s) 149
BmgT120I GGNCC 1 cut(s) 149
BmsI GCATC 2 cut(s) 63, 457
BmtI GCTAGC 1 cut(s) 417
BpiI GAAGAC 4 cut(s) 81, 273, 309, 489
BsaI GGTCTC 1 cut(s) 10
Bse118I RCCGGY 1 cut(s) 119
BsiSI CCGG 1 cut(s) 120
BslFI GGGAC 1 cut(s) 50
BsmAI GTCTC 1 cut(s) 10
BsmFI GGGAC 1 cut(s) 50
Bso31I GGTCTC 1 cut(s) 10
Bsp143I GATC 2 cut(s) 193, 239
BspOI GCTAGC 1 cut(s) 417
BspTNI GGTCTC 1 cut(s) 10
BsrFI RCCGGY 1 cut(s) 119
BssAI RCCGGY 1 cut(s) 119
BssMI GATC 2 cut(s) 193, 239
Bst4CI ACNGT 2 cut(s) 272, 308
Bst6I CTCTTC 2 cut(s) 160, 168
BstC8I GCNNGC 1 cut(s) 415
BstKTI GATC 2 cut(s) 196, 242
BstMAI GTCTC 1 cut(s) 10
BstMBI GATC 2 cut(s) 193, 239
BstNSI RCATGY 1 cut(s) 490
BstV2I GAAGAC 4 cut(s) 81, 273, 309, 489
BstX2I RGATCY 1 cut(s) 239
BstYI RGATCY 1 cut(s) 239
BtsIMutI CAGTG 1 cut(s) 64
Cac8I GCNNGC 1 cut(s) 415
Cfr10I RCCGGY 1 cut(s) 119
Cfr13I GGNCC 1 cut(s) 149
CspCI CAANNNNNGTGG 2 cut(s) 141, 176
CviAII CATG 1 cut(s) 487
CviJI RGCY 4 cut(s) 119, 131, 389, 413
CviKI_1 RGCY 4 cut(s) 119, 131, 389, 413
DpnI GATC 2 cut(s) 195, 241
DpnII GATC 2 cut(s) 193, 239
DrdI GACNNNNNNGTC 1 cut(s) 83
DseDI GACNNNNNNGTC 1 cut(s) 83
Eam1104I CTCTTC 2 cut(s) 160, 168
EarI CTCTTC 2 cut(s) 160, 168
Eco31I GGTCTC 1 cut(s) 10
Eco47I GGWCC 1 cut(s) 149
Eco57I CTGAAG 6 cut(s) 153, 285, 321, 375, 411, 483
FaeI CATG 1 cut(s) 490
FaiI YATR 1 cut(s) 488
FaqI GGGAC 1 cut(s) 50
FatI CATG 1 cut(s) 486
FspBI CTAG 2 cut(s) 414, 471
HapII CCGG 1 cut(s) 120
Hin1II CATG 1 cut(s) 490
HinfI GANTC 1 cut(s) 227
HpaII CCGG 1 cut(s) 120
HphI GGTGA 3 cut(s) 134, 149, 182
Hpy166II GTNNAC 4 cut(s) 257, 329, 383, 455
Hpy188I TCNGA 2 cut(s) 198, 244
Hpy188III TCNNGA 1 cut(s) 110
Hpy8I GTNNAC 4 cut(s) 257, 329, 383, 455
HpyAV CCTTC 2 cut(s) 128, 350
HpyCH4III ACNGT 2 cut(s) 272, 308
HpyCH4IV ACGT 1 cut(s) 39
HpySE526I ACGT 1 cut(s) 39
Hsp92II CATG 1 cut(s) 490
Kzo9I GATC 2 cut(s) 193, 239
LpnPI CCDG 1 cut(s) 133
LweI GCATC 2 cut(s) 63, 457
MaeI CTAG 2 cut(s) 414, 471
MaeII ACGT 1 cut(s) 39
MalI GATC 2 cut(s) 195, 241
MboI GATC 2 cut(s) 193, 239
MfeI CAATTG 1 cut(s) 80
MflI RGATCY 1 cut(s) 239
MluCI AATT 7 cut(s) 80, 213, 246, 315, 369, 404, 423
MnlI CCTC 5 cut(s) 27, 94, 161, 169, 199
MseI TTAA 2 cut(s) 216, 236
MspI CCGG 1 cut(s) 120
MunI CAATTG 1 cut(s) 80
NdeII GATC 2 cut(s) 193, 239
NheI GCTAGC 1 cut(s) 413
NlaIII CATG 1 cut(s) 490
NspI RCATGY 1 cut(s) 490
PciI ACATGT 1 cut(s) 486
PfeI GAWTC 1 cut(s) 227
PscI ACATGT 1 cut(s) 486
PspPI GGNCC 1 cut(s) 149
PsuI RGATCY 1 cut(s) 239
SaqAI TTAA 2 cut(s) 216, 236
Sau3AI GATC 2 cut(s) 193, 239
Sau96I GGNCC 1 cut(s) 149
SfaNI GCATC 2 cut(s) 63, 457
SinI GGWCC 1 cut(s) 149
SmlI CTYRAG 1 cut(s) 11
SmoI CTYRAG 1 cut(s) 11
Sse9I AATT 7 cut(s) 80, 213, 246, 315, 369, 404, 423
SspMI CTAG 2 cut(s) 414, 471
TaaI ACNGT 2 cut(s) 272, 308
TaiI ACGT 1 cut(s) 42
TasI AATT 7 cut(s) 80, 213, 246, 315, 369, 404, 423
TfiI GAWTC 1 cut(s) 227
Tru1I TTAA 2 cut(s) 216, 236
Tru9I TTAA 2 cut(s) 216, 236
TscAI CASTG 1 cut(s) 64
TspDTI ATGAA 1 cut(s) 129
TspRI CASTG 1 cut(s) 64
VpaK11BI GGWCC 1 cut(s) 149
XceI RCATGY 1 cut(s) 490
XspI CTAG 2 cut(s) 414, 471
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.