Rmu_sc0004439.1_g000003

Alcohol dehydrogenase GroES-like domain

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004439.1
Physical Location & Seq
Reverse (-)
10047 .. 12641
2595 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004439.1_g000003.1.cds

Sequence Viewer

Length: 786 bp
atgttcacaacacaaaatattggtctaatcaacttgcctttgattggtttgttgaagtctcatggaaagcttgttatggttggtgcaccagaaaagcctcttgagcttccggtttttcctctactcatgggaaggaagatggtagctggtagcctcattggagatatgaaagagaaacaaaagatgatcaattttgcagccaagcacaacataacagcagacatcgaggttatcccagttgattacttgaacaatgccatggagcgccttgccaaagcagactctcatggaaagcttgttatggttggtgcaccagaaaaacctcttgagcttccggtttttcctttactcatgggaaggaagatggtagctggtagcctcattggagatatgaaagagaaacaaaagatgatcaattttgcagccaagcacaacataacagcagacatcgaggttatcccagttgattacttgaacaatgccatggagcgccttgccaaagcagactctcatggaaagcttgttatggttggtgcaccagaaaaacctcttgagcttccggtttttcctttactcatgggaaggaagatggtagctggtagcctcattggagatatgaaagagaaacaaaagatgatcaattttgcagccaagcacaacataacagcagacatcgaggttatcccagttgactacttgaacaatgccatggagcgccttgccaaagcagacgtcagataccattttgtcattgacattggaaacacactgaaggccagcccttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

261

Amino Acids

28.69

Weight (kDa)

9.19

Isoelectric Point (pI)

38.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000167)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G37980 AT4G37980 AT4G37990
fragaria_vesca FvH4_1g19210 FvH4_1g19220 FvH4_1g19240 FvH4_1g19240 FvH4_1g19261 FvH4_1g19262 FvH4_1g19263 FvH4_1g19263 FvH4_1g19265 FvH4_1g19281 FvH4_1g19281 FvH4_7g07240 FvH4_7g07240 FvH4_7g07240
malus_domestica MD01G1042500.v1.1 MD01G1042600.v1.1 MD01G1042800.v1.1 MD01G1042900.v1.1 MD05G1034100.v1.1 MD10G1035900.v1.1 MD10G1036000.v1.1 MD10G1155000.v1.1 MD10G1155100.v1.1 MD10G1155200.v1.1 MD10G1155400.v1.1 MD10G1155700.v1.1 MD10G1155800.v1.1 MD15G1308800.v1.1 MD15G1308900.v1.1
prunus_persica Prupe.6G205600_v2.0.a1 Prupe.6G205700_v2.0.a1 Prupe.6G205800_v2.0.a1 Prupe.6G205900_v2.0.a1 Prupe.6G206300_v2.0.a1 Prupe.6G206800_v2.0.a1 Prupe.6G207100_v2.0.a1 Prupe.6G207200_v2.0.a1 Prupe.6G207300_v2.0.a1 Prupe.6G207400_v2.0.a1 Prupe.6G207500_v2.0.a1 Prupe.6G207600_v2.0.a1 Prupe.6G207700_v2.0.a1 Prupe.6G207900_v2.0.a1
pyrus_communis pycom01g06970 pycom01g06980 pycom01g06990 pycom05g02460 pycom08g00750 pycom10g13410 pycom15g27310 pycom15g27320
rosa_chinensis RchiOBHm_Chr1g0314861 RchiOBHm_Chr1g0345441 RchiOBHm_Chr1g0345451 RchiOBHm_Chr1g0345621 RchiOBHm_Chr1g0345751 RchiOBHm_Chr1g0345861 RchiOBHm_Chr1g0345871 RchiOBHm_Chr1g0345891 RchiOBHm_Chr2g0094851 RchiOBHm_Chr2g0110471 RchiOBHm_Chr2g0110511 RchiOBHm_Chr2g0110531 RchiOBHm_Chr2g0110541 RchiOBHm_Chr2g0110571 RchiOBHm_Chr5g0039381 RchiOBHm_Chr5g0039391 RchiOBHm_Chr6g0270311 RchiOBHm_Chr6g0270331 RchiOBHm_Chr6g0270411 RchiOBHm_Chr6g0270431
rosa_laevigata RLG00000000515 RLG00000013793 RLG00000013797 RLG00000013799 RLG00000016525 RLG00000017808 RLG00000017811 RLG00000017813 RLG00000017816 RLG00000017819 RLG00000017822 RLG00000017824 RLG00000017825 RLG00000028835
rosa_multiflora Rmu_co8225458.1_g000001 Rmu_sc0000389.1_g000006 Rmu_sc0000389.1_g000014 Rmu_sc0000389.1_g000023 Rmu_sc0001292.1_g000012 Rmu_sc0001292.1_g000026 Rmu_sc0002145.1_g000003 Rmu_sc0002329.1_g000033 Rmu_sc0002833.1_g000044 Rmu_sc0004316.1_g000012 Rmu_sc0004439.1_g000003 Rmu_sc0006422.1_g000028 Rmu_sc0009479.1_g000012 Rmu_sc0010489.1_g000009 Rmu_sc0010489.1_g000010 Rmu_sc0017837.1_g000003 Rmu_sc0032320.1_g000001
rosa_roxburghii Rroxscaffold_1G00050770 Rroxscaffold_2G00133110 Rroxscaffold_2G00133140 Rroxscaffold_2G00133200 Rroxscaffold_2G00133270 Rroxscaffold_2G00133290 Rroxscaffold_2G00133300 Rroxscaffold_2G00133350 Rroxscaffold_4G00292490 Rroxscaffold_4G00309020 Rroxscaffold_4G00331740 Rroxscaffold_4G00331800 Rroxscaffold_6G00404470 Rroxscaffold_7G00197950 Rroxscaffold_7G00197990 Rroxscaffold_7G00198020
rosa_rugosa Rorug01G0002500 Rorug02G0047200 Rorug02G0047300 Rorug02G0047300 Rorug02G0047400 Rorug02G0168000 Rorug02G0168000 Rorug02G0168100 Rorug02G0168100 Rorug02G0168400.1 Rorug03G0157600 Rorug03G0157700 Rorug05G0112600 Rorug06G0054600 Rorug06G0054700
rosa_samantha Rh1AG013300 Rh1AG195600 Rh1AG195700 Rh1AG196000 Rh1BG004900 Rh1BG114300 Rh2AG132300 Rh2BG095500 Rh2BG229700 Rh2BG229800 Rh2CG097400 Rh2CG221500 Rh2CG221800 Rh2CG222100 Rh2CG222200 Rh2CG222500 Rh2CG222600 Rh2CG345000 Rh5BG269700 Rh6AG172900 Rh6AG173100 Rh6CG080500 Rh6DG075900 Rh6DG164700 Rh6DG164900 Rh6DG165200 Rh6DG165300
rosa_wichuraiana Rw0G015390 Rw1G000600 Rw1G016130 Rw1G016190 Rw2G007140 Rw2G016970 Rw2G016990 Rw2G017000 Rw3G018910 Rw3G018920 Rw3G018930 Rw5G024830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 735
AcyI GRCGYC 1 cut(s) 732
AfiI CCNNNNNNNGG 1 cut(s) 44
AgsI TTSAA 4 cut(s) 55, 250, 475, 700
AluBI AGCT 9 cut(s) 70, 106, 146, 295, 331, 371, 520, 556, 596
AluI AGCT 9 cut(s) 70, 106, 146, 295, 331, 371, 520, 556, 596
Alw21I GWGCWC 3 cut(s) 88, 313, 538
Alw26I GTCTC 1 cut(s) 63
Alw44I GTGCAC 3 cut(s) 84, 309, 534
AoxI GGCC 1 cut(s) 774
ApaLI GTGCAC 3 cut(s) 84, 309, 534
ApeKI GCWGC 3 cut(s) 197, 422, 647
ArsI GACNNNNNNTTYG 4 cut(s) 7, 39, 717, 749
AspLEI GCGC 3 cut(s) 267, 492, 717
BaeGI GKGCMC 3 cut(s) 88, 313, 538
Bbv12I GWGCWC 3 cut(s) 88, 313, 538
BbvI GCAGC 3 cut(s) 209, 434, 659
BccI CCATC 3 cut(s) 133, 358, 583
BclI TGATCA 3 cut(s) 186, 411, 636
BcoDI GTCTC 1 cut(s) 63
BfoI RGCGCY 3 cut(s) 268, 493, 718
BisI GCNGC 3 cut(s) 198, 423, 648
BlsI GCNGC 3 cut(s) 199, 424, 649
BmrI ACTGGG 3 cut(s) 230, 455, 680
BmuI ACTGGG 3 cut(s) 230, 455, 680
BpuEI CTTGAG 3 cut(s) 122, 347, 572
BsaHI GRCGYC 1 cut(s) 732
BsaJI CCNNGG 3 cut(s) 258, 483, 708
BsaWI WCCGGW 3 cut(s) 109, 334, 559
Bsc4I CCNNNNNNNGG 1 cut(s) 44
Bse1I ACTGG 3 cut(s) 236, 461, 686
BseDI CCNNGG 3 cut(s) 258, 483, 708
BseLI CCNNNNNNNGG 1 cut(s) 44
BseNI ACTGG 3 cut(s) 236, 461, 686
BseSI GKGCMC 3 cut(s) 88, 313, 538
BseXI GCAGC 3 cut(s) 209, 434, 659
BshFI GGCC 1 cut(s) 776
BsiHKAI GWGCWC 3 cut(s) 88, 313, 538
BsiSI CCGG 3 cut(s) 110, 335, 560
BslI CCNNNNNNNGG 1 cut(s) 44
BsmAI GTCTC 1 cut(s) 63
BsnI GGCC 1 cut(s) 776
Bsp1286I GDGCHC 3 cut(s) 88, 313, 538
Bsp143I GATC 3 cut(s) 186, 411, 636
Bsp19I CCATGG 3 cut(s) 258, 483, 708
BspANI GGCC 1 cut(s) 776
BsrI ACTGG 3 cut(s) 236, 461, 686
BssECI CCNNGG 3 cut(s) 258, 483, 708
BssMI GATC 3 cut(s) 186, 411, 636
BssNI GRCGYC 1 cut(s) 732
BssT1I CCWWGG 3 cut(s) 258, 483, 708
BstACI GRCGYC 1 cut(s) 732
BstC8I GCNNGC 1 cut(s) 778
BstDSI CCRYGG 3 cut(s) 258, 483, 708
BstH2I RGCGCY 3 cut(s) 268, 493, 718
BstHHI GCGC 3 cut(s) 267, 492, 717
BstKTI GATC 3 cut(s) 189, 414, 639
BstMAI GTCTC 1 cut(s) 63
BstMBI GATC 3 cut(s) 186, 411, 636
BstMWI GCNNNNNNNGC 1 cut(s) 103
BstSLI GKGCMC 3 cut(s) 88, 313, 538
BstV1I GCAGC 3 cut(s) 209, 434, 659
BsuRI GGCC 1 cut(s) 776
BtgI CCRYGG 3 cut(s) 258, 483, 708
BtsIMutI CAGTG 1 cut(s) 767
Cac8I GCNNGC 1 cut(s) 778
CfoI GCGC 3 cut(s) 267, 492, 717
CviAII CATG 9 cut(s) 62, 127, 259, 287, 352, 484, 512, 577, 709
DpnI GATC 3 cut(s) 188, 413, 638
DpnII GATC 3 cut(s) 186, 411, 636
Eco130I CCWWGG 3 cut(s) 258, 483, 708
EcoT14I CCWWGG 3 cut(s) 258, 483, 708
ErhI CCWWGG 3 cut(s) 258, 483, 708
FaeI CATG 9 cut(s) 65, 130, 262, 290, 355, 487, 515, 580, 712
FatI CATG 9 cut(s) 61, 126, 258, 286, 351, 483, 511, 576, 708
FbaI TGATCA 3 cut(s) 186, 411, 636
Fnu4HI GCNGC 3 cut(s) 198, 423, 648
Fsp4HI GCNGC 3 cut(s) 198, 423, 648
GlaI GCGC 3 cut(s) 266, 491, 716
GluI GCNGC 3 cut(s) 198, 423, 648
HaeII RGCGCY 3 cut(s) 268, 493, 718
HaeIII GGCC 1 cut(s) 776
HapII CCGG 3 cut(s) 110, 335, 560
HhaI GCGC 3 cut(s) 267, 492, 717
Hin1I GRCGYC 1 cut(s) 732
Hin1II CATG 9 cut(s) 65, 130, 262, 290, 355, 487, 515, 580, 712
Hin6I GCGC 3 cut(s) 265, 490, 715
HinP1I GCGC 3 cut(s) 265, 490, 715
HincII GTYRAC 1 cut(s) 691
HindII GTYRAC 1 cut(s) 691
HindIII AAGCTT 3 cut(s) 68, 293, 518
HinfI GANTC 2 cut(s) 281, 506
HpaII CCGG 3 cut(s) 110, 335, 560
Hpy166II GTNNAC 5 cut(s) 6, 86, 311, 536, 691
Hpy188I TCNGA 1 cut(s) 737
Hpy188III TCNNGA 3 cut(s) 101, 326, 551
Hpy8I GTNNAC 5 cut(s) 6, 86, 311, 536, 691
HpyAV CCTTC 4 cut(s) 126, 351, 576, 766
HpyCH4IV ACGT 1 cut(s) 732
HpyCH4V TGCA 6 cut(s) 86, 197, 311, 422, 536, 647
HpyF10VI GCNNNNNNNGC 1 cut(s) 103
HpySE526I ACGT 1 cut(s) 732
Hsp92I GRCGYC 1 cut(s) 732
Hsp92II CATG 9 cut(s) 65, 130, 262, 290, 355, 487, 515, 580, 712
HspAI GCGC 3 cut(s) 265, 490, 715
Ksp22I TGATCA 3 cut(s) 186, 411, 636
Kzo9I GATC 3 cut(s) 186, 411, 636
LmnI GCTCC 3 cut(s) 262, 487, 712
Lsp1109I GCAGC 3 cut(s) 209, 434, 659
MaeII ACGT 1 cut(s) 732
MalI GATC 3 cut(s) 188, 413, 638
MboI GATC 3 cut(s) 186, 411, 636
MboII GAAGA 3 cut(s) 148, 373, 598
MhlI GDGCHC 3 cut(s) 88, 313, 538
MluCI AATT 3 cut(s) 190, 415, 640
MlyI GAGTC 2 cut(s) 275, 500
MseI TTAA 1 cut(s) 784
MspI CCGG 3 cut(s) 110, 335, 560
MwoI GCNNNNNNNGC 1 cut(s) 103
NcoI CCATGG 3 cut(s) 258, 483, 708
NdeII GATC 3 cut(s) 186, 411, 636
NlaIII CATG 9 cut(s) 65, 130, 262, 290, 355, 487, 515, 580, 712
PkrI GCNGC 3 cut(s) 199, 424, 649
PleI GAGTC 2 cut(s) 275, 500
PpsI GAGTC 2 cut(s) 275, 500
SaqAI TTAA 1 cut(s) 784
SatI GCNGC 3 cut(s) 198, 423, 648
Sau3AI GATC 3 cut(s) 186, 411, 636
SchI GAGTC 2 cut(s) 275, 500
SduI GDGCHC 3 cut(s) 88, 313, 538
SmlI CTYRAG 3 cut(s) 101, 326, 551
SmoI CTYRAG 3 cut(s) 101, 326, 551
Sse9I AATT 3 cut(s) 190, 415, 640
SspI AATATT 1 cut(s) 19
StyI CCWWGG 3 cut(s) 258, 483, 708
TaiI ACGT 1 cut(s) 735
TaqI TCGA 3 cut(s) 225, 450, 675
TasI AATT 3 cut(s) 190, 415, 640
Tru1I TTAA 1 cut(s) 784
Tru9I TTAA 1 cut(s) 784
TscAI CASTG 1 cut(s) 774
TseI GCWGC 3 cut(s) 197, 422, 647
TspDTI ATGAA 3 cut(s) 182, 407, 632
TspRI CASTG 1 cut(s) 774
VneI GTGCAC 3 cut(s) 84, 309, 534
ZraI GACGTC 1 cut(s) 733
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.