Prupe.6G205800_v2.0.a1

Dehydrogenase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0000167
Physical Location & Seq
Reverse (-)
21395562 .. 21396255
694 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G205800.1

Sequence Viewer

Length: 471 bp
ATGGGGGTTAAGATTACTGTGATCAGTACCTCCCCTGGAAAGGAGGAGGAAGCTATTAAACATCTTCATGCTGACTCGTTTTTGGTCAGTCGTGATGAAGATCAGATGCAGGCTGCCATGGGCACGATGGATGGTATTATTGATACAGTCTCTGCAAACCATCCTCTCTTACCTTACATTGATTTGTTAAAGTCTCATGGAAAGCTTGTTATGGTTGGTGCACCGGAGAAGCGTCCCGAGCTTCCGGTTTTTCCTCTGCTGATGGGAAGGAAGATAGTAGCTGGTAGTTGCGTTGGTGGTATGAAGGAGACACAAGAGATGATTGATTTTGCGGCCAAGCACAACGTTACAGCTGATATTGAAGTTATCCCTATTGATTATGTGAATACTGCAATAGAGCGTCTTGCTAAAACAGACGTTAGATATCGCTTTGTCATTGACATTGGAAACACATTGAAGCCTAGCTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
ADH_N ADH_zinc_N

Protein Analysis

157

Amino Acids

17.06

Weight (kDa)

5.7

Isoelectric Point (pI)

29.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000167)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G37980 AT4G37980 AT4G37990
fragaria_vesca FvH4_1g19210 FvH4_1g19220 FvH4_1g19240 FvH4_1g19240 FvH4_1g19261 FvH4_1g19262 FvH4_1g19263 FvH4_1g19263 FvH4_1g19265 FvH4_1g19281 FvH4_1g19281 FvH4_7g07240 FvH4_7g07240 FvH4_7g07240
malus_domestica MD01G1042500.v1.1 MD01G1042600.v1.1 MD01G1042800.v1.1 MD01G1042900.v1.1 MD05G1034100.v1.1 MD10G1035900.v1.1 MD10G1036000.v1.1 MD10G1155000.v1.1 MD10G1155100.v1.1 MD10G1155200.v1.1 MD10G1155400.v1.1 MD10G1155700.v1.1 MD10G1155800.v1.1 MD15G1308800.v1.1 MD15G1308900.v1.1
prunus_persica Prupe.6G205600_v2.0.a1 Prupe.6G205700_v2.0.a1 Prupe.6G205800_v2.0.a1 Prupe.6G205900_v2.0.a1 Prupe.6G206300_v2.0.a1 Prupe.6G206800_v2.0.a1 Prupe.6G207100_v2.0.a1 Prupe.6G207200_v2.0.a1 Prupe.6G207300_v2.0.a1 Prupe.6G207400_v2.0.a1 Prupe.6G207500_v2.0.a1 Prupe.6G207600_v2.0.a1 Prupe.6G207700_v2.0.a1 Prupe.6G207900_v2.0.a1
pyrus_communis pycom01g06970 pycom01g06980 pycom01g06990 pycom05g02460 pycom08g00750 pycom10g13410 pycom15g27310 pycom15g27320
rosa_chinensis RchiOBHm_Chr1g0314861 RchiOBHm_Chr1g0345441 RchiOBHm_Chr1g0345451 RchiOBHm_Chr1g0345621 RchiOBHm_Chr1g0345751 RchiOBHm_Chr1g0345861 RchiOBHm_Chr1g0345871 RchiOBHm_Chr1g0345891 RchiOBHm_Chr2g0094851 RchiOBHm_Chr2g0110471 RchiOBHm_Chr2g0110511 RchiOBHm_Chr2g0110531 RchiOBHm_Chr2g0110541 RchiOBHm_Chr2g0110571 RchiOBHm_Chr5g0039381 RchiOBHm_Chr5g0039391 RchiOBHm_Chr6g0270311 RchiOBHm_Chr6g0270331 RchiOBHm_Chr6g0270411 RchiOBHm_Chr6g0270431
rosa_laevigata RLG00000000515 RLG00000013793 RLG00000013797 RLG00000013799 RLG00000016525 RLG00000017808 RLG00000017811 RLG00000017813 RLG00000017816 RLG00000017819 RLG00000017822 RLG00000017824 RLG00000017825 RLG00000028835
rosa_multiflora Rmu_co8225458.1_g000001 Rmu_sc0000389.1_g000006 Rmu_sc0000389.1_g000014 Rmu_sc0000389.1_g000023 Rmu_sc0001292.1_g000012 Rmu_sc0001292.1_g000026 Rmu_sc0002145.1_g000003 Rmu_sc0002329.1_g000033 Rmu_sc0002833.1_g000044 Rmu_sc0004316.1_g000012 Rmu_sc0004439.1_g000003 Rmu_sc0006422.1_g000028 Rmu_sc0009479.1_g000012 Rmu_sc0010489.1_g000009 Rmu_sc0010489.1_g000010 Rmu_sc0017837.1_g000003 Rmu_sc0032320.1_g000001
rosa_roxburghii Rroxscaffold_1G00050770 Rroxscaffold_2G00133110 Rroxscaffold_2G00133140 Rroxscaffold_2G00133200 Rroxscaffold_2G00133270 Rroxscaffold_2G00133290 Rroxscaffold_2G00133300 Rroxscaffold_2G00133350 Rroxscaffold_4G00292490 Rroxscaffold_4G00309020 Rroxscaffold_4G00331740 Rroxscaffold_4G00331800 Rroxscaffold_6G00404470 Rroxscaffold_7G00197950 Rroxscaffold_7G00197990 Rroxscaffold_7G00198020
rosa_rugosa Rorug01G0002500 Rorug02G0047200 Rorug02G0047300 Rorug02G0047300 Rorug02G0047400 Rorug02G0168000 Rorug02G0168000 Rorug02G0168100 Rorug02G0168100 Rorug02G0168400.1 Rorug03G0157600 Rorug03G0157700 Rorug05G0112600 Rorug06G0054600 Rorug06G0054700
rosa_samantha Rh1AG013300 Rh1AG195600 Rh1AG195700 Rh1AG196000 Rh1BG004900 Rh1BG114300 Rh2AG132300 Rh2BG095500 Rh2BG229700 Rh2BG229800 Rh2CG097400 Rh2CG221500 Rh2CG221800 Rh2CG222100 Rh2CG222200 Rh2CG222500 Rh2CG222600 Rh2CG345000 Rh5BG269700 Rh6AG172900 Rh6AG173100 Rh6CG080500 Rh6DG075900 Rh6DG164700 Rh6DG164900 Rh6DG165200 Rh6DG165300
rosa_wichuraiana Rw0G015390 Rw1G000600 Rw1G016130 Rw1G016190 Rw2G007140 Rw2G016970 Rw2G016990 Rw2G017000 Rw3G018910 Rw3G018920 Rw3G018930 Rw5G024830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 332
AclI AACGTT 1 cut(s) 345
AcoI YGGCCR 1 cut(s) 333
AfaI GTAC 1 cut(s) 28
AfiI CCNNNNNNNGG 1 cut(s) 40
AgsI TTSAA 2 cut(s) 362, 457
AjnI CCWGG 1 cut(s) 34
AluBI AGCT 6 cut(s) 53, 205, 241, 281, 353, 465
AluI AGCT 6 cut(s) 53, 205, 241, 281, 353, 465
Alw21I GWGCWC 1 cut(s) 223
Alw26I GTCTC 3 cut(s) 154, 198, 302
Alw44I GTGCAC 1 cut(s) 219
AlwNI CAGNNNCTG 1 cut(s) 152
Ama87I CYCGRG 1 cut(s) 236
AoxI GGCC 1 cut(s) 333
ApaLI GTGCAC 1 cut(s) 219
ApeKI GCWGC 1 cut(s) 113
AvaI CYCGRG 1 cut(s) 236
BaeGI GKGCMC 2 cut(s) 125, 223
Bbv12I GWGCWC 1 cut(s) 223
BbvI GCAGC 1 cut(s) 100
BccI CCATC 4 cut(s) 121, 125, 168, 256
BciT130I CCWGG 1 cut(s) 36
BclI TGATCA 1 cut(s) 21
BcoDI GTCTC 3 cut(s) 154, 198, 302
BfaI CTAG 1 cut(s) 462
BisI GCNGC 2 cut(s) 114, 333
BlsI GCNGC 2 cut(s) 115, 334
Bme1390I CCNGG 1 cut(s) 36
BmeT110I CYCGRG 1 cut(s) 236
BmrFI CCNGG 1 cut(s) 36
BmsI GCATC 1 cut(s) 96
BsaBI GATNNNNATC 1 cut(s) 99
BsaJI CCNNGG 2 cut(s) 34, 117
BsaWI WCCGGW 2 cut(s) 223, 244
Bsc4I CCNNNNNNNGG 1 cut(s) 40
Bse8I GATNNNNATC 1 cut(s) 99
BseBI CCWGG 1 cut(s) 36
BseDI CCNNGG 2 cut(s) 34, 117
BseGI GGATG 2 cut(s) 136, 160
BseJI GATNNNNATC 1 cut(s) 99
BseLI CCNNNNNNNGG 1 cut(s) 40
BseRI GAGGAG 1 cut(s) 59
BseSI GKGCMC 2 cut(s) 125, 223
BseXI GCAGC 1 cut(s) 100
BshFI GGCC 1 cut(s) 335
BsiHKAI GWGCWC 1 cut(s) 223
BsiHKCI CYCGRG 1 cut(s) 236
BsiSI CCGG 2 cut(s) 224, 245
BslFI GGGAC 1 cut(s) 219
BslI CCNNNNNNNGG 1 cut(s) 40
BsmAI GTCTC 3 cut(s) 154, 198, 302
BsmFI GGGAC 1 cut(s) 219
BsnI GGCC 1 cut(s) 335
BsoBI CYCGRG 1 cut(s) 236
Bsp1286I GDGCHC 2 cut(s) 125, 223
Bsp143I GATC 2 cut(s) 21, 100
Bsp19I CCATGG 1 cut(s) 117
BspACI CCGC 1 cut(s) 332
BspANI GGCC 1 cut(s) 335
BssECI CCNNGG 2 cut(s) 34, 117
BssMI GATC 2 cut(s) 21, 100
BssT1I CCWWGG 1 cut(s) 117
Bst2UI CCWGG 1 cut(s) 36
Bst4CI ACNGT 2 cut(s) 19, 148
BstC8I GCNNGC 1 cut(s) 111
BstDSI CCRYGG 1 cut(s) 117
BstF5I GGATG 2 cut(s) 136, 160
BstKTI GATC 2 cut(s) 24, 103
BstMAI GTCTC 3 cut(s) 154, 198, 302
BstMBI GATC 2 cut(s) 21, 100
BstMWI GCNNNNNNNGC 1 cut(s) 238
BstNI CCWGG 1 cut(s) 36
BstSCI CCNGG 1 cut(s) 34
BstSLI GKGCMC 2 cut(s) 125, 223
BstV1I GCAGC 1 cut(s) 100
BsuRI GGCC 1 cut(s) 335
BtgI CCRYGG 1 cut(s) 117
BtsCI GGATG 2 cut(s) 136, 160
Cac8I GCNNGC 1 cut(s) 111
CaiI CAGNNNCTG 1 cut(s) 152
CseI GACGC 2 cut(s) 221, 389
Csp6I GTAC 1 cut(s) 27
CviAII CATG 3 cut(s) 68, 118, 197
CviJI RGCY 9 cut(s) 53, 113, 205, 241, 281, 335, 353, 460, 465
CviKI_1 RGCY 9 cut(s) 53, 113, 205, 241, 281, 335, 353, 460, 465
CviQI GTAC 1 cut(s) 27
DpnI GATC 2 cut(s) 23, 102
DpnII GATC 2 cut(s) 21, 100
EaeI YGGCCR 1 cut(s) 333
Eco130I CCWWGG 1 cut(s) 117
Eco32I GATATC 1 cut(s) 425
Eco88I CYCGRG 1 cut(s) 236
EcoRII CCWGG 1 cut(s) 34
EcoRV GATATC 1 cut(s) 425
EcoT14I CCWWGG 1 cut(s) 117
ErhI CCWWGG 1 cut(s) 117
FaeI CATG 3 cut(s) 71, 121, 200
FaiI YATR 6 cut(s) 69, 119, 198, 212, 302, 381
FaqI GGGAC 1 cut(s) 219
FatI CATG 3 cut(s) 67, 117, 196
FbaI TGATCA 1 cut(s) 21
Fnu4HI GCNGC 2 cut(s) 114, 333
FokI GGATG 2 cut(s) 143, 147
Fsp4HI GCNGC 2 cut(s) 114, 333
FspBI CTAG 1 cut(s) 462
GluI GCNGC 2 cut(s) 114, 333
HaeIII GGCC 1 cut(s) 335
HapII CCGG 2 cut(s) 224, 245
HgaI GACGC 2 cut(s) 221, 389
Hin1II CATG 3 cut(s) 71, 121, 200
HindIII AAGCTT 1 cut(s) 203
HinfI GANTC 1 cut(s) 74
HpaII CCGG 2 cut(s) 224, 245
Hpy166II GTNNAC 1 cut(s) 221
Hpy188I TCNGA 1 cut(s) 105
Hpy188III TCNNGA 2 cut(s) 92, 236
Hpy8I GTNNAC 1 cut(s) 221
HpyAV CCTTC 2 cut(s) 261, 298
HpyCH4III ACNGT 2 cut(s) 19, 148
HpyCH4IV ACGT 2 cut(s) 345, 417
HpyCH4V TGCA 4 cut(s) 109, 155, 221, 392
HpyF10VI GCNNNNNNNGC 1 cut(s) 238
HpySE526I ACGT 2 cut(s) 345, 417
Hsp92II CATG 3 cut(s) 71, 121, 200
Ksp22I TGATCA 1 cut(s) 21
Kzo9I GATC 2 cut(s) 21, 100
LpnPI CCDG 6 cut(s) 21, 48, 95, 237, 258, 267
Lsp1109I GCAGC 1 cut(s) 100
LweI GCATC 1 cut(s) 96
MaeI CTAG 1 cut(s) 462
MaeII ACGT 2 cut(s) 345, 417
MaeIII GTNAC 1 cut(s) 346
MalI GATC 2 cut(s) 23, 102
MboI GATC 2 cut(s) 21, 100
MboII GAAGA 3 cut(s) 56, 110, 283
MhlI GDGCHC 2 cut(s) 125, 223
MlyI GAGTC 1 cut(s) 68
MnlI CCTC 5 cut(s) 37, 40, 40, 174, 264
MseI TTAA 4 cut(s) 9, 57, 188, 469
MslI CAYNNNNRTG 1 cut(s) 66
MspA1I CMGCKG 1 cut(s) 353
MspI CCGG 2 cut(s) 224, 245
MspR9I CCNGG 1 cut(s) 36
MvaI CCWGG 1 cut(s) 36
MwoI GCNNNNNNNGC 1 cut(s) 238
NcoI CCATGG 1 cut(s) 117
NdeII GATC 2 cut(s) 21, 100
NlaIII CATG 3 cut(s) 71, 121, 200
PkrI GCNGC 2 cut(s) 115, 334
PleI GAGTC 1 cut(s) 68
PpsI GAGTC 1 cut(s) 68
Psp1406I AACGTT 1 cut(s) 345
Psp6I CCWGG 1 cut(s) 34
PspGI CCWGG 1 cut(s) 34
PstNI CAGNNNCTG 1 cut(s) 152
PvuII CAGCTG 1 cut(s) 353
RsaI GTAC 1 cut(s) 28
RsaNI GTAC 1 cut(s) 27
RseI CAYNNNNRTG 1 cut(s) 66
SaqAI TTAA 4 cut(s) 9, 57, 188, 469
SatI GCNGC 2 cut(s) 114, 333
Sau3AI GATC 2 cut(s) 21, 100
SchI GAGTC 1 cut(s) 68
ScrFI CCNGG 1 cut(s) 36
SduI GDGCHC 2 cut(s) 125, 223
SfaNI GCATC 1 cut(s) 96
SmiMI CAYNNNNRTG 1 cut(s) 66
SsiI CCGC 1 cut(s) 332
SspMI CTAG 1 cut(s) 462
StyD4I CCNGG 1 cut(s) 34
StyI CCWWGG 1 cut(s) 117
TaaI ACNGT 2 cut(s) 19, 148
TaiI ACGT 2 cut(s) 348, 420
TauI GCSGC 1 cut(s) 335
Tru1I TTAA 4 cut(s) 9, 57, 188, 469
Tru9I TTAA 4 cut(s) 9, 57, 188, 469
TseI GCWGC 1 cut(s) 113
TspDTI ATGAA 3 cut(s) 56, 111, 317
VneI GTGCAC 1 cut(s) 219
XcmI CCANNNNNNNNNTGG 1 cut(s) 124
XspI CTAG 1 cut(s) 462
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.